PI0008928 (gene) Melon (PI 482460) v1

Overview


Name	PI0008928
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribosomal protein L41 family
Location	chr12: 24378123 .. 24378895 (-)
RNA-Seq Expression	PI0008928
Synteny	PI0008928

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTAAACTTATAGTTTGTCCAAATTAGTACCAAACTTTTATAATAAATCGTCTAAATATCTCTTCAGTGAATATCATCTTATGGATTCAATGAACTCTTAATGGGCCGAATTCTTCAATCTGTTTGCTATTTTCGGCCCAATTAGATTTAGGGTTTATATATATACTGCTTCATCTCATTTCACAGGTTGATTCTACTGTCTTCACCTTTCTTCCTTCCGCCGTTCGTCGACGCTCACCTGACAGAGAGCACTCGGACTTTTTTTGCATCGTCGCCATGAGAGCTAAGGTAATTGTTGTCAAGATTCATCTATAGATTCAGCTCGTTTTCAGCTTTATCATCTTTTTCGACATGCTTCATTGGCTCTGACGTTTTGAAATTTTCGTTTTCTGGCAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCGTTTTCTGAGTGATGGTTTCCGACCTAGGGTTTTGGTTACTGTTTAGTTTTATTTTTCTCATGCGTAACTTGGATTGTTTTTAAATTGTTTTGTGATCGATACATTTTGTTGTCTTGAATCCAGAACTTGTTTTCCAGCCTTACAGTTTTTATCTAGTGATTTTTATATGCTATATATTTGTTCTAATGATGGTCATGCCAAAGCATCAATTCATTAATTTCTCCCGCAATAATCTAATTTATTAGCTTTTGCCTACTTGAATGAATACCATCACTTAGCTTTCTCCACTCTCTTCAAAT

mRNA sequence

ATGAGATTTAAACTTATAGTTGATTCTACTGTCTTCACCTTTCTTCCTTCCGCCGTTCGTCGACGCTCACCTGACAGAGAGCACTCGGACTTTTTTTGCATCGTCGCCATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAGTGGCCGTTTTCTGAGTGATGGTTTCCGACCTAGGGTTTTGGTTACTGTTTAGTTTTATTTTTCTCATGCGTAACTTGGATTGTTTTTAAATTGTTTTGTGATCGATACATTTTGTTGTCTTGAATCCAGAACTTGTTTTCCAGCCTTACAGTTTTTATCTAGTGATTTTTATATGCTATATATTTGTTCTAATGATGGTCATGCCAAAGCATCAATTCATTAATTTCTCCCGCAATAATCTAATTTATTAGCTTTTGCCTACTTGAATGAATACCATCACTTAGCTTTCTCCACTCTCTTCAAAT

Coding sequence (CDS)

ATGAGATTTAAACTTATAGTTGATTCTACTGTCTTCACCTTTCTTCCTTCCGCCGTTCGTCGACGCTCACCTGACAGAGAGCACTCGGACTTTTTTTGCATCGTCGCCATGAGAGCTAAGTGGAAGAAGAAGAGAATGAGGAGGTTGAAGAGAAAGCGCCGAAAGATGAGGCAGAGATCGAAGTAG

Protein sequence

MRFKLIVDSTVFTFLPSAVRRRSPDREHSDFFCIVAMRAKWKKKRMRRLKRKRRKMRQRSK

Homology

[Close]

BLAST of PI0008928 vs. TAIR 10
Match: AT1G56045.1 (Ribosomal protein L41 family )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 37 MRAKWKKKRMRRLKRKRRKMRQRSK 62
          MRAKWKKKRMRRLKRKRRKMRQRSK
Sbjct: 1  MRAKWKKKRMRRLKRKRRKMRQRSK 25

[Close]

BLAST of PI0008928 vs. TAIR 10
Match: AT2G40205.1 (Ribosomal protein L41 family )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 37 MRAKWKKKRMRRLKRKRRKMRQRSK 62
          MRAKWKKKRMRRLKRKRRKMRQRSK
Sbjct: 1  MRAKWKKKRMRRLKRKRRKMRQRSK 25

[Close]

BLAST of PI0008928 vs. TAIR 10
Match: AT3G11120.1 (Ribosomal protein L41 family )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 37 MRAKWKKKRMRRLKRKRRKMRQRSK 62
          MRAKWKKKRMRRLKRKRRKMRQRSK
Sbjct: 1  MRAKWKKKRMRRLKRKRRKMRQRSK 25

[Close]

BLAST of PI0008928 vs. TAIR 10
Match: AT3G08520.1 (Ribosomal protein L41 family )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 37 MRAKWKKKRMRRLKRKRRKMRQRSK 62
          MRAKWKKKRMRRLKRKRRKMRQRSK
Sbjct: 1  MRAKWKKKRMRRLKRKRRKMRQRSK 25

[Close]

BLAST of PI0008928 vs. TAIR 10
Match: AT3G56020.1 (Ribosomal protein L41 family )

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 37 MRAKWKKKRMRRLKRKRRKMRQRSK 62
          MRAKWKKKRMRRLKRKRRKMRQRSK
Sbjct: 1  MRAKWKKKRMRRLKRKRRKMRQRSK 25

The following BLAST results are available for this feature:

BLAST of PI0008928 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008928 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008928 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008928 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56045.1	4.6e-04	100.00	Ribosomal protein L41 family	[more]
AT2G40205.1	4.6e-04	100.00	Ribosomal protein L41 family	[more]
AT3G11120.1	4.6e-04	100.00	Ribosomal protein L41 family	[more]
AT3G08520.1	4.6e-04	100.00	Ribosomal protein L41 family	[more]
AT3G56020.1	4.6e-04	100.00	Ribosomal protein L41 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
IPR007836	Ribosomal protein L41	PFAM	PF05162	Ribosomal_L41	coord: 37..61 e-value: 7.7E-11 score: 41.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008928.1	PI0008928.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome