PI0008905 (gene) Melon (PI 482460) v1

Overview


Name	PI0008905
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	cyclin-dependent protein kinase inhibitor SMR4
Location	chr08: 22294346 .. 22295222 (+)
RNA-Seq Expression	PI0008905
Synteny	PI0008905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGTTTAATTATGTTAATATTAGGGGAGATGAAAATTCAAAAGGTTTAAAAAAACAATAAAATTAATAAGAAAATGGGAAGACCCAGTCAACAATTGACGCGTAGACGACTTCTCATTTCTTAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATTTCTCTGCTTCTTTCAAACACACACCAATTTTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCTCGCCACCGTCCACGGCGGCCCTCTGTTCGGAGTTTCCAATTTCATTACCTTCTTCAAAACTTTACCAAATAAACCTCTACCTCTTACTTTTCATTTCCTTGGGTATGGAGTCCAAACAGGGGACTGAGAATTACGAGGAAGAGTGTTCGACGCCCACCCGGTGGGAGTGCCGGATTCCCGCGGTGTTTAACTGCCCGCCGCCGCCGAAGAAGAAGGTTGGAACTGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGCGCTTAATTTTTATGCTCTGTTTTAGGGTTTTAAGGAAATGAGTTTTTTGTTTTTTGTTTTTTTTTTCTTCTTCTGTTTGATTAGATTGTTCTATTGAATTGTGAATACATTTTGAGAGTTTGAAAATTGATTTGGGCTTTTTAGTTTGCCATTTATGAGAGTTCGTATTGAGAATGGAAGAATCTTGGGGTTGAAATATTATGGGTTTTAATTGGGGAAACATAAAATTTCATGTTTCTCATTGGATTTTATTTAGGTTGCTAAATTAACTTGATAATGATAGTTTGTATTGCCTTTTCAGTAGCAAATTCATGTTTAAATCCTTA

mRNA sequence

ATGGAAGAGTTTAATTATGTTAATATTAGGGGAGATGAAAATTCAAAAGACGACTTCTCATTTCTTAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATTTCTCTGCTTCTTTCAAACACACACCAATTTTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCTCGCCACCGTCCACGGCGGCCCTCTGTTCGGAGTTTCCAATTTCATTACCTTCTTCAAAACTTTACCAAATAAACCTCTACCTCTTACTTTTCATTTCCTTGGGTATGGAGTCCAAACAGGGGACTGAGAATTACGAGGAAGAGTGTTCGACGCCCACCCGGTGGGAGTGCCGGATTCCCGCGGTGTTTAACTGCCCGCCGCCGCCGAAGAAGAAGGTTGGAACTGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGCGCTTAATTTTTATGCTCTGTTTTAGGGTTTTAAGGAAATGAGTTTTTTGTTTTTTGTTTTTTTTTTCTTCTTCTGTTTGATTAGATTGTTCTATTGAATTGTGAATACATTTTGAGAGTTTGAAAATTGATTTGGGCTTTTTAGTTTGCCATTTATGAGAGTTCGTATTGAGAATGGAAGAATCTTGGGGTTGAAATATTATGGGTTTTAATTGGGGAAACATAAAATTTCATGTTTCTCATTGGATTTTATTTAGGTTGCTAAATTAACTTGATAATGATAGTTTGTATTGCCTTTTCAGTAGCAAATTCATGTTTAAATCCTTA

Coding sequence (CDS)

ATGGAAGAGTTTAATTATGTTAATATTAGGGGAGATGAAAATTCAAAAGACGACTTCTCATTTCTTAGCTGTCTCCCACATCCACGCCACTCCCCGCCATTCATTTATTTCTCTGCTTCTTTCAAACACACACCAATTTTTCAAAATCAAATTCTCCTCCTCCTCCTCCTCTCGCCACCGTCCACGGCGGCCCTCTGTTCGGAGTTTCCAATTTCATTACCTTCTTCAAAACTTTACCAAATAAACCTCTACCTCTTACTTTTCATTTCCTTGGGTATGGAGTCCAAACAGGGGACTGAGAATTACGAGGAAGAGTGTTCGACGCCCACCCGGTGGGAGTGCCGGATTCCCGCGGTGTTTAACTGCCCGCCGCCGCCGAAGAAGAAGGTTGGAACTGATGGGAAGAAGCGGGAACCACCGAAACATGGCTATTTTCAGCCACCTGATCTTGAGGCTCTGTTTTCTGTTCCTCCCAGAAGGGAAGCCTGCGCTTAA

Protein sequence

MEEFNYVNIRGDENSKDDFSFLSCLPHPRHSPPFIYFSASFKHTPIFQNQILLLLLLSPPSTAALCSEFPISLPSSKLYQINLYLLLFISLGMESKQGTENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPPRREACA

Homology

[Close]

BLAST of PI0008905 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 99  TENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPP 158
           TE  EE C+TP     RIP    CPPPP+KK+    +KR+PP++GYFQPPDLE LF   P
Sbjct: 8   TEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMV-VRKRDPPRNGYFQPPDLETLFYAQP 67

Query: 159 RREACA 165
           RREACA
Sbjct: 68  RREACA 72

[Close]

BLAST of PI0008905 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.3e-13
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 100 ENYEEECSTPTRWECRIPAVFNCPPPPKKKVGT--DGKKREPPKHGYFQPPDLEALFSVP 159
           ++Y+  C+TPTR +CRIPA   CPPP ++K      GKKREPPK GYFQPPDL+  FSV 
Sbjct: 16  DDYQMGCTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVV 75

Query: 160 PRREA 163
              +A
Sbjct: 76  AASQA 80

[Close]

BLAST of PI0008905 vs. ExPASy TrEMBL
Match: A0A0A0LAJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.4e-44
Identity = 106/164 (64.63%), Postives = 112/164 (68.29%), Query Frame = 0


Query: 8   NIRGDENSKDDFSFLSCLPHPRHSPPFIYFSASFKHTPIFQNQ-------ILLLLLLSPP 67
           N  GDENSK   S +     PRHS  F++    FKHTP F           LLLL     
Sbjct: 3   NFGGDENSK-AVSHIDAT--PRHSFIFLFL---FKHTPNFSKSNSHSPPPPLLLLATVHA 62

Query: 68  STAALCSEFPISLPSSKLYQINLYLLLFISLGMESKQGTENYEEECSTPTRWECRIPAVF 127
               + S F   L   KLY INLYLLLFISL M+SKQGT NYEEECSTPTRWECRIPAVF
Sbjct: 63  RALFVVSNFHYLL--LKLYSINLYLLLFISLAMDSKQGTGNYEEECSTPTRWECRIPAVF 122

Query: 128 NCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPPRREACA 165
           NCPPPPKKK  T GKKREPPKHGYFQPPDLEALFS+PPRREACA
Sbjct: 123 NCPPPPKKKNATAGKKREPPKHGYFQPPDLEALFSIPPRREACA 158

[Close]

BLAST of PI0008905 vs. ExPASy TrEMBL
Match: A0A6J1J1Y0 (cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LOC111481954 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPP---KKKVGTDGKKREPPKHGYFQPPD 152
           ME+KQG  NYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 153 LEALFSVPPRREAC 164
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of PI0008905 vs. ExPASy TrEMBL
Match: A0A7N2M7Y9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 100 ENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPPR 159
           E  E+ CSTP R EC+IP V  CPPPPKKK    G KR+PPK+GYFQPPDL+A+F++PPR
Sbjct: 5   ERSEDRCSTPKRRECQIPVVVVCPPPPKKK-SASGMKRDPPKNGYFQPPDLDAIFTMPPR 64

Query: 160 REACA 165
           REA A
Sbjct: 65  REAWA 68

[Close]

BLAST of PI0008905 vs. ExPASy TrEMBL
Match: A0A2N9GK17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30668 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 100 ENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPPR 159
           E  E  C+TP R EC+IP V  CPPPPKKK  + G KR+PPK+GYF PPDL+ALF++PPR
Sbjct: 3   ERSEGRCTTPKRRECQIPVVLVCPPPPKKKTAS-GMKRDPPKNGYFHPPDLDALFTMPPR 62

Query: 160 REACA 165
           REA A
Sbjct: 63  REAWA 66

[Close]

BLAST of PI0008905 vs. ExPASy TrEMBL
Match: A0A540NAX5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006159 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 103 EEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPPRREA 162
           EE+C+TP   ECRIP V  CPPPPKKK   + KKREPPK+GYFQPPDL+ALF++PPR ++
Sbjct: 2   EEDCTTPKWRECRIPEVNMCPPPPKKKAAGE-KKREPPKNGYFQPPDLDALFALPPRTQS 61

Query: 163 C 164
           C
Sbjct: 62  C 61

[Close]

BLAST of PI0008905 vs. NCBI nr
Match: XP_038905412.1 (cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 4.8e-34
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEA 152
           ME+KQG  NYEEECSTPTRWECRIPAVFNCPPPPKKK+GTDGKKR+PPKHGYFQPPDLEA
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPKKKIGTDGKKRDPPKHGYFQPPDLEA 60

Query: 153 LFSVPPRREACA 165
           LFSVPPRREACA
Sbjct: 61  LFSVPPRREACA 72

[Close]

BLAST of PI0008905 vs. NCBI nr
Match: XP_031737830.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 hypothetical protein Csa_002137 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEA 152
           M+SKQGT NYEEECSTPTRWECRIPAVFNCPPPPKKK  T GKKREPPKHGYFQPPDLEA
Sbjct: 1   MDSKQGTGNYEEECSTPTRWECRIPAVFNCPPPPKKKNATAGKKREPPKHGYFQPPDLEA 60

Query: 153 LFSVPPRREACA 165
           LFS+PPRREACA
Sbjct: 61  LFSIPPRREACA 72

[Close]

BLAST of PI0008905 vs. NCBI nr
Match: XP_023528630.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.0 bits (354), Expect = 9.3e-30
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPP---KKKVGTDGKKREPPKHGYFQPPD 152
           ME+KQG  NYEEECSTPTRWECRIPAVFNCPPPP   KKK  + GKKREPPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 153 LEALFSVPPRREAC 164
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of PI0008905 vs. NCBI nr
Match: XP_022983341.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-29
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPP---KKKVGTDGKKREPPKHGYFQPPD 152
           ME+KQG  NYEEECSTPTRWECRIPAVFNCPPPP   KKK    GKKREPPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVFNCPPPPPPKKKKAVGSGKKREPPKHGYFQPPD 60

Query: 153 LEALFSVPPRREAC 164
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of PI0008905 vs. NCBI nr
Match: KAG6580535.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017288.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 7.9e-29
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 93  MESKQGTENYEEECSTPTRWECRIPAVFNCPPPP---KKKVGTDGKKREPPKHGYFQPPD 152
           ME+KQG  NYEEECSTPTRWECRIPAV NCPPPP   KKK  + GKKREPPKHGYFQPPD
Sbjct: 1   MEAKQGPANYEEECSTPTRWECRIPAVSNCPPPPPPKKKKAVSSGKKREPPKHGYFQPPD 60

Query: 153 LEALFSVPPRREAC 164
           LEALFSVPPRREAC
Sbjct: 61  LEALFSVPPRREAC 74

[Close]

BLAST of PI0008905 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 8.2e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 99  TENYEEECSTPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEALFSVPP 158
           TE  EE C+TP     RIP    CPPPP+KK+    +KR+PP++GYFQPPDLE LF   P
Sbjct: 8   TEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMV-VRKRDPPRNGYFQPPDLETLFYAQP 67

Query: 159 RREACA 165
           RREACA
Sbjct: 68  RREACA 72

[Close]

BLAST of PI0008905 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.2e-04
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 94  ESKQGTENYEEECS-TPTRWECRIPAVFNCPPPPKKKVGTDGKKREPPKHGYFQPPDLEA 153
           E ++   N EEECS TPT  E +IP +  CPP P+K+      +    +  +  P DLE 
Sbjct: 47  EVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLET 106

Query: 154 LF 155
           +F
Sbjct: 107 VF 108

The following BLAST results are available for this feature:

BLAST of PI0008905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	1.2e-14	59.09	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	8.3e-13	55.38	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of PI0008905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ2	9.4e-44	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734160 PE=4 SV=1	[more]
A0A6J1J1Y0	1.0e-29	86.49	cyclin-dependent protein kinase inhibitor SMR4 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A7N2M7Y9	2.8e-16	66.15	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9GK17	1.8e-15	64.62	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30668 PE=4 SV=1	[more]
A0A540NAX5	1.8e-15	67.21	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006159 PE=4 SV=1	[more]

BLAST of PI0008905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905412.1	4.8e-34	93.06	cyclin-dependent protein kinase inhibitor SMR4 [Benincasa hispida]	[more]
XP_031737830.1	1.5e-32	91.67	cyclin-dependent protein kinase inhibitor SMR4 [Cucumis sativus] >KAE8651008.1 h...	[more]
XP_023528630.1	9.3e-30	86.49	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita pepo subsp. pepo]	[more]
XP_022983341.1	2.1e-29	86.49	cyclin-dependent protein kinase inhibitor SMR4 [Cucurbita maxima]	[more]
KAG6580535.1	7.9e-29	85.14	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]

BLAST of PI0008905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	8.2e-16	59.09	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G40460.1	3.2e-04	37.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..150
None	No IPR available	PANTHER	PTHR33142:SF15	OS01G0843700 PROTEIN	coord: 57..162
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 57..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008905.1	PI0008905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication