PI0008832 (gene) Melon (PI 482460) v1

Overview


Name	PI0008832
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	40S ribosomal protein S25
Location	chr08: 9933872 .. 9934996 (+)
RNA-Seq Expression	PI0008832
Synteny	PI0008832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGTTTTTTCTTCAAAACCCTTCAAAATTCTCTTCTTCTTCCGCCTATTACTCTCTTTTCCATGTCCAATCGACTAAGCCTAGTGTAGAATCCTCTTCAAAGTTACCGCAATTTTTTGGGAAATTAGTTCAGTTTTCTGGAAAATTAGCCACGTTATTGTTTGAGTTCATCCTTCTATACACCATTCTTCACTGGAATCAAAGCAGAATAGATAGACTAAGTTGCGGAATCAGTTTAGTTGGACTGCTGAACAGCAGTGAAGTTTTTTTTATTATTTTTTTTATTTTTATTTTTAAATTTATTTATTGGATCTGAATATGGCTAAGTTGATTGTTCAGTGATTTTATAATTTATTATGACTGTTTATCCGTTTCACTTTTCTATATGTGATTGTGAGGTCCAAGGGTTGTACAAGTAATGATTTTATTGAGTGTGGAAAGGATGGGAAGTCTATGTGTTGTGTGATTTATGAATTCAGTAATATAAACTTTATCCTACTTGGTATCCATATGGCAGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCTAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTTGTTATGTGATGACTGTATGTTTTAAAGTTTAGGCTCAGTTTGATAACTGCTTGGTTGAAATTTTAAGCTTTATAAACTGCACTTCTTTCTACCTTAACTTATTTGTTTAGTAACCTTCTTATTCTAACATGTACTCAAAATTCAAGCGAAAATGTGAAGACTAAACAATGTAGGGCTCGTTTTACAACTATTTGGTTTTTGCTTTTTGAAAATTAAGCTTATAAATATTAACTTCTGCCTGTTTGAATTTGACTATGATATGTTTCTCCTCCACCTGCCCTTAAGAGAAAAAGGGTGTTTTTTGTGGATGGTTGAGGTGTGCCCGTGATTTGGGATGTTTGGGAGGAGAGTAATGATCGGGTGTGTCCCAGTAGAGTGAGGGACCATAGTGAGGTTTGAGCCTTTTTTAAATTTCATGCGTCATTTGGGCTTTAGTTTTGAAGACCTTTTGGAACTATTCCTTAGGTAACATTTTAATTAGTTGGTATCCATTTTTATAGGTGGGGTGCTTTGATGGGCTGA

mRNA sequence

ATGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCTAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGCTTATAAATATTAACTTCTGCCTGTTTGAATTTGACTATGATATGTTTCTCCTCCACCTGCCCTTAAGAGAAAAAGGGTGGGGTGCTTTGATGGGCTGA

Coding sequence (CDS)

ATGGCACCTAAGAAGGACAAGGCTCCTCCTCCATCCTCTAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGCTTATAAATATTAACTTCTGCCTGTTTGAATTTGACTATGATATGTTTCTCCTCCACCTGCCCTTAAGAGAAAAAGGGTGGGGTGCTTTGATGGGCTGA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCLFEFDYDMFLLHLPLREKGWGALMG

Homology

[Close]

BLAST of PI0008832 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-05
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKK +APPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKAQAPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. ExPASy TrEMBL
Match: A0A6A1WJB9 (40S ribosomal protein S25 OS=Morella rubra OX=262757 GN=CJ030_MR1G019301 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKL------ININFCLFEFDYDMFLLHLPLRE 51
          MAPKK+KAPPPSSKPAKSGGGKQKKK+      ++++FC F+       LHL +R+
Sbjct: 1  MAPKKEKAPPPSSKPAKSGGGKQKKKIPFFIIEVSVSFCWFK-------LHLLIRK 49

[Close]

BLAST of PI0008832 vs. ExPASy TrEMBL
Match: A0A1D6PYT7 (40S ribosomal protein S25 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d049933 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCL----------FEFDYDMFLLHLPLRE 53
          MAPKKDKAPPPSSKPAKSGGGKQKKK+  +++ L          F F    FLL L    
Sbjct: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKVTLLSYWLVSSICWRCSFFGFSRHSFLLVLQKWS 60

[Close]

BLAST of PI0008832 vs. ExPASy TrEMBL
Match: A0A3L6F8V4 (40S ribosomal protein S25 OS=Zea mays OX=4577 GN=RPS25D PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCL----------FEFDYDMFLLHLPLRE 53
          MAPKKDKAPPPSSKPAKSGGGKQKKK+  +++ L          F F    FLL L    
Sbjct: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKVTLLSYWLVSSICWRCSFFGFSRHSFLLVLQKWS 60

[Close]

BLAST of PI0008832 vs. ExPASy TrEMBL
Match: A0A5C7I5P7 (40S ribosomal protein S25 OS=Acer yangbiense OX=1000413 GN=EZV62_011575 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININ 32
          MAPKK+KAPPPSSKPAKSGGGKQKKK++N N
Sbjct: 1  MAPKKEKAPPPSSKPAKSGGGKQKKKVVNQN 31

[Close]

BLAST of PI0008832 vs. ExPASy TrEMBL
Match: A0A7J7DFN7 (40S ribosomal protein S25 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00457 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK---------LININFCLFEFDYDMFLLHLP 48
          MAPKKDKAPPPSSKPAKSGGGKQKKK          +N      +  YD  L+ +P
Sbjct: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLIEVP 56

[Close]

BLAST of PI0008832 vs. NCBI nr
Match: KAB1225419.1 (40S ribosomal protein S25 [Morella rubra])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKL------ININFCLFEFDYDMFLLHLPLRE 51
          MAPKK+KAPPPSSKPAKSGGGKQKKK+      ++++FC F+       LHL +R+
Sbjct: 1  MAPKKEKAPPPSSKPAKSGGGKQKKKIPFFIIEVSVSFCWFK-------LHLLIRK 49

[Close]

BLAST of PI0008832 vs. NCBI nr
Match: AQK51610.1 (ribosomal protein S25 [Zea mays])

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCL----------FEFDYDMFLLHLPLRE 53
          MAPKKDKAPPPSSKPAKSGGGKQKKK+  +++ L          F F    FLL L    
Sbjct: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKVTLLSYWLVSSICWRCSFFGFSRHSFLLVLQKWS 60

[Close]

BLAST of PI0008832 vs. NCBI nr
Match: PWZ29664.1 (40S ribosomal protein S25-3 [Zea mays])

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCL----------FEFDYDMFLLHLPLRE 53
          MAPKKDKAPPPSSKPAKSGGGKQKKK+  +++ L          F F    FLL L    
Sbjct: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKVTLLSYWLVSSICWRCSFFGFSRHSFLLVLQKWS 60

[Close]

BLAST of PI0008832 vs. NCBI nr
Match: TXG64581.1 (hypothetical protein EZV62_011575 [Acer yangbiense])

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-05
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININ 32
          MAPKK+KAPPPSSKPAKSGGGKQKKK++N N
Sbjct: 1  MAPKKEKAPPPSSKPAKSGGGKQKKKVVNQN 31

[Close]

BLAST of PI0008832 vs. NCBI nr
Match: XP_011032870.1 (PREDICTED: 40S ribosomal protein S25 isoform X1 [Populus euphratica])

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKKLININFCL----FEFDYDMFLLHLPLREKG 53
          MAPKK+KAPPPSSKPAKSGGGKQKKK+  I   L    F   YD+   ++    KG
Sbjct: 1  MAPKKEKAPPPSSKPAKSGGGKQKKKVKKITGLLECLGFFLSYDLLGFYVQKWSKG 56

[Close]

BLAST of PI0008832 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

[Close]

BLAST of PI0008832 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-07
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1  MAPKKDKAPPPSSKPAKSGGGKQKKK 27
          MAPKKDK PPPSSKPAKSGGGKQKKK
Sbjct: 1  MAPKKDKVPPPSSKPAKSGGGKQKKK 26

The following BLAST results are available for this feature:

BLAST of PI0008832 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIW5	4.5e-06	96.15	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]
Q9SIK2	4.5e-06	96.15	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	4.5e-06	96.15	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9T029	4.5e-06	96.15	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
P46301	3.8e-05	92.31	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]

BLAST of PI0008832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WJB9	1.0e-05	57.14	40S ribosomal protein S25 OS=Morella rubra OX=262757 GN=CJ030_MR1G019301 PE=3 SV...	[more]
A0A1D6PYT7	1.4e-05	56.45	40S ribosomal protein S25 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d049933 PE=3 SV...	[more]
A0A3L6F8V4	1.4e-05	56.45	40S ribosomal protein S25 OS=Zea mays OX=4577 GN=RPS25D PE=3 SV=1	[more]
A0A5C7I5P7	4.0e-05	87.10	40S ribosomal protein S25 OS=Acer yangbiense OX=1000413 GN=EZV62_011575 PE=3 SV=...	[more]
A0A7J7DFN7	1.5e-04	55.36	40S ribosomal protein S25 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G0045...	[more]

BLAST of PI0008832 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1225419.1	2.2e-05	57.14	40S ribosomal protein S25 [Morella rubra]	[more]
AQK51610.1	2.8e-05	56.45	ribosomal protein S25 [Zea mays]	[more]
PWZ29664.1	2.8e-05	56.45	40S ribosomal protein S25-3 [Zea mays]	[more]
TXG64581.1	8.2e-05	87.10	hypothetical protein EZV62_011575 [Acer yangbiense]	[more]
XP_011032870.1	1.1e-04	57.14	PREDICTED: 40S ribosomal protein S25 isoform X1 [Populus euphratica]	[more]

BLAST of PI0008832 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	3.2e-07	96.15	Ribosomal protein S25 family protein	[more]
AT2G21580.2	3.2e-07	96.15	Ribosomal protein S25 family protein	[more]
AT4G39200.1	3.2e-07	96.15	Ribosomal protein S25 family protein	[more]
AT4G34555.1	3.2e-07	96.15	Ribosomal protein S25 family protein	[more]
AT4G39200.2	3.2e-07	96.15	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008832.1	PI0008832.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome