PI0008831 (gene) Melon (PI 482460) v1

Overview


Name	PI0008831
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 21430369 .. 21430745 (-)
RNA-Seq Expression	PI0008831
Synteny	PI0008831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGAGTTGTGGAGAAAATCCTTCGACCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAGTTCCCTTGAAGCACATGAACAAAGAAAGAAAAAAAGACAACAAGAAGTCATAGAGGAGACGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGACAAAGGTTATGGTCGTGA

mRNA sequence

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGAGTTGTGGAGAAAATCCTTCGACCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAACAAGAAGTCATAGAGGAGACGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGACAAAGGTTATGGTCGTGA

Coding sequence (CDS)

ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCGGGTTCAAACGGTGGTGAACCAACTTAAACGCAATGGAGAAACCCTCAAAGATGCCAGAGTTGTGGAGAAAATCCTTCGACCATTGACAAATGACTTTGAAAATGTGGTATGTGCAATCGAGGAGTCAAAGAATTTGGAAGAAATGACTATTGATGAACTTGCAAAAAAAAAGACAACAAGAAGTCATAGAGGAGACGACCTTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCGAGGAAGAGGACGTGGCAGTTTCAGTCGCGACAAAGGTTATGGTCGTGA

Protein sequence

MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTIDELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTWQFQSRQRLWS

Homology

[Close]

BLAST of PI0008831 vs. ExPASy TrEMBL
Match: A0A5D3C1S7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00390 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.7e-34
Identity = 85/113 (75.22%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILR LTNDF+NVVCAIE+ KNL
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  EEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTW 106
           EEMTI EL         +KK TR  RG  LTNKDDHQRRQGNVCTTQSRK+TW
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRGPRG-GLTNKDDHQRRQGNVCTTQSRKKTW 112

[Close]

BLAST of PI0008831 vs. ExPASy TrEMBL
Match: A0A5D3CND8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 72/107 (67.29%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 10  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI---- 69
           +D + + Q VVNQLK NG+TLKDARVVEKI   LTNDFENVVCA EESKNLEEMT     
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  -------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTW 106
                   E  +KKTTR   G  +TNKDDHQRRQGNVCTTQSRKRTW
Sbjct: 104 IPLKHMNKERKEKKTTRD-PGRGITNKDDHQRRQGNVCTTQSRKRTW 149

[Close]

BLAST of PI0008831 vs. ExPASy TrEMBL
Match: A0A6A2XY19 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111877pilonHSYRG00353 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.4e-22
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILR LT+DFENVVCAIEESK+L
Sbjct: 97  MTMKESEGVSDYITHVQTVVNQLKCNGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 156

Query: 61  EEMTIDELA 70
           EE+TID LA
Sbjct: 157 EELTIDHLA 165

[Close]

BLAST of PI0008831 vs. ExPASy TrEMBL
Match: A0A2I0VED6 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILR LTN+FENVVCAIEESK+L
Sbjct: 99  MKMKESEGVSDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEESKDL 158

Query: 61  EEMTIDELA 70
             +T++ELA
Sbjct: 159 GTLTVEELA 167

[Close]

BLAST of PI0008831 vs. ExPASy TrEMBL
Match: A0A6A3CTC0 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001860pilonHSYRG00008 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.1e-22
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MKMKESEGVSD ITRVQTVVNQLK  GETLKD+RVVEKILR LT+DFENVVCAIEESK+L
Sbjct: 73  MKMKESEGVSDNITRVQTVVNQLKCKGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 132

Query: 61  EEMTIDELAKKKTTRSHRGDDLTNKDDHQRRQGNV 96
           EE+TID+LA        R     N+   +  Q NV
Sbjct: 133 EELTIDDLAGSLEAHEQRKKKKKNESLEEALQANV 167

[Close]

BLAST of PI0008831 vs. NCBI nr
Match: KAA0052859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04366.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 9.8e-34
Identity = 85/113 (75.22%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MK+KESE VSDYIT+VQTVVNQLKRNG+T KD R+VEKILR LTNDF+NVVCAIE+ KNL
Sbjct: 1   MKIKESEVVSDYITQVQTVVNQLKRNGKTFKDVRIVEKILRSLTNDFKNVVCAIEKLKNL 60

Query: 61  EEMTIDELA--------KKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTW 106
           EEMTI EL         +KK TR  RG  LTNKDDHQRRQGNVCTTQSRK+TW
Sbjct: 61  EEMTIGELVSSLEAHELRKKKTRGPRG-GLTNKDDHQRRQGNVCTTQSRKKTW 112

[Close]

BLAST of PI0008831 vs. NCBI nr
Match: KAA0060771.1 (polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 72/107 (67.29%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 10  SDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNLEEMTI---- 69
           +D + + Q VVNQLK NG+TLKDARVVEKI   LTNDFENVVCA EESKNLEEMT     
Sbjct: 44  ADRVKQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQ 103

Query: 70  -------DELAKKKTTRSHRGDDLTNKDDHQRRQGNVCTTQSRKRTW 106
                   E  +KKTTR   G  +TNKDDHQRRQGNVCTTQSRKRTW
Sbjct: 104 IPLKHMNKERKEKKTTRD-PGRGITNKDDHQRRQGNVCTTQSRKRTW 149

[Close]

BLAST of PI0008831 vs. NCBI nr
Match: XP_038878101.1 (uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MKMKESE VS YITRVQTVVNQLKRNGETL+DA+VVEKILR LTNDF+NVVCAIEESK L
Sbjct: 127 MKMKESERVSHYITRVQTVVNQLKRNGETLEDAKVVEKILRSLTNDFKNVVCAIEESKTL 186

Query: 61  EEMTIDELA 70
           EEMTID+LA
Sbjct: 187 EEMTIDDLA 195

[Close]

BLAST of PI0008831 vs. NCBI nr
Match: KAE8672005.1 (hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus])

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-22
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           M MKESEGVSDYIT VQTVVNQLK NGETLKD+RVVEKILR LT+DFENVVCAIEESK+L
Sbjct: 97  MTMKESEGVSDYITHVQTVVNQLKCNGETLKDSRVVEKILRSLTDDFENVVCAIEESKDL 156

Query: 61  EEMTIDELA 70
           EE+TID LA
Sbjct: 157 EELTIDHLA 165

[Close]

BLAST of PI0008831 vs. NCBI nr
Match: PKU61774.1 (hypothetical protein MA16_Dca028474 [Dendrobium catenatum])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MKMKESEGVSDYITRVQTVVNQLKRNGETLKDARVVEKILRPLTNDFENVVCAIEESKNL 60
           MKMKESEGVSDYITRVQTVVNQLKRNGE L DARVVEKILR LTN+FENVVCAIEESK+L
Sbjct: 99  MKMKESEGVSDYITRVQTVVNQLKRNGEMLTDARVVEKILRSLTNNFENVVCAIEESKDL 158

Query: 61  EEMTIDELA 70
             +T++ELA
Sbjct: 159 GTLTVEELA 167

The following BLAST results are available for this feature:

BLAST of PI0008831 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1S7	4.7e-34	75.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CND8	1.1e-25	67.29	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold818G00050 PE...	[more]
A0A6A2XY19	2.4e-22	86.96	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A2I0VED6	5.4e-22	85.51	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028474 PE=4...	[more]
A0A6A3CTC0	7.1e-22	68.42	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]

BLAST of PI0008831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052859.1	9.8e-34	75.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060771.1	2.2e-25	67.29	polyprotein [Cucumis melo var. makuwa] >TYK13387.1 polyprotein [Cucumis melo var...	[more]
XP_038878101.1	1.3e-22	88.41	uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]	[more]
KAE8672005.1	5.0e-22	86.96	hypothetical protein F3Y22_tig00111877pilonHSYRG00353 [Hibiscus syriacus]	[more]
PKU61774.1	1.1e-21	85.51	hypothetical protein MA16_Dca028474 [Dendrobium catenatum]	[more]

BLAST of PI0008831 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..71 e-value: 3.6E-14 score: 52.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..115
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..69
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008831.1	PI0008831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding