PI0008827 (gene) Melon (PI 482460) v1

Overview
NamePI0008827
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr01: 8011586 .. 8011975 (+)
RNA-Seq ExpressionPI0008827
SyntenyPI0008827
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGTGACAAAGTGTTGTTTAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGACAGGAAATGGTGAGTATCTATAAGTAAAAGGGAAGGGCACAGTGTCAATAGAGAGCTATGTTGGAACCAAGTTCATTATGGAAGTGTTGTTTGTTTTTGAGATTGATCAAAGTTTGTTGAGCATTAGTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTCATTTTTTATTCTAATGGGAGTGAGTTGTTCAAAATAAAGACGCAGCACAAGAGTTTCTTGTTGGATCCACTTGAGAAGGAGCAGATAGCTTTCAAGTGTCAAGTGAATGACCCTGAGTTATGGCACAAGAGGTTAGAGCATTTTCATTAG

mRNA sequence

ATGACAAGTGACAAAGTGTTGTTTAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGACAGGAAATGTGTCAATAGAGAGCTATGTTGGAACCAAGTTCATTATGGAAGTGTTGTTTGTTTTTGAGATTGATCAAAGTTTGTTGAGCATTAGTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTCATTTTTTATTCTAATGGGAGTGAGTTGTTCAAAATAAAGACGCAGCACAAGAGTTTCTTGTTGGATCCACTTGAGAAGGAGCAGATAGCTTTCAAGTGTCAAGTGAATGACCCTGAGTTATGGCACAAGAGGTTAGAGCATTTTCATTAG

Coding sequence (CDS)

ATGACAAGTGACAAAGTGTTGTTTAAGGACCTTGACAAGTCATTCAAGTCAAAGGTGAAGACAGGAAATGTGTCAATAGAGAGCTATGTTGGAACCAAGTTCATTATGGAAGTGTTGTTTGTTTTTGAGATTGATCAAAGTTTGTTGAGCATTAGTCAATTAATAGAGAAGGGATTCAAAGTGTTGTTTGAAGAAGGAAAGTGCCTCATTTTTTATTCTAATGGGAGTGAGTTGTTCAAAATAAAGACGCAGCACAAGAGTTTCTTGTTGGATCCACTTGAGAAGGAGCAGATAGCTTTCAAGTGTCAAGTGAATGACCCTGAGTTATGGCACAAGAGGTTAGAGCATTTTCATTAG

Protein sequence

MTSDKVLFKDLDKSFKSKVKTGNVSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPELWHKRLEHFH
Homology
BLAST of PI0008827 vs. ExPASy TrEMBL
Match: A0A6J1DWT9 (uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025149 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.8e-35
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           M SDK LFKDLD+SFKS+VK GN            SIES VGTK I EVLFV  I Q+LL
Sbjct: 273 MXSDKELFKDLDRSFKSRVKIGNGEYLEVKGKXTXSIESCVGTKLITEVLFVPXIAQNLL 332

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 119
           S+ QL+EKGFKVLFE  KCLI  SNG+E FKIK QHKSF LDP+EK+QI  KCQVND EL
Sbjct: 333 SVGQLVEKGFKVLFEYEKCLISDSNGNEWFKIKMQHKSFSLDPVEKDQIVSKCQVNDTEL 392

BLAST of PI0008827 vs. ExPASy TrEMBL
Match: A0A5A7TNI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00270 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 84/128 (65.62%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLD SFKSKVK GN           VS +S  GTK I +VLF+ EIDQ+LL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 118
           ++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  QHKSF L+ LE+EQ+AFKCQVND + 
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTKF 120

BLAST of PI0008827 vs. ExPASy TrEMBL
Match: A0A5D3BE46 (Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00220 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.1e-33
Identity = 82/128 (64.06%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLD SFKS+VK GN           VS +S  GTK I +VLF+ EIDQ+LL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 118
           ++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  Q KSF L+ LE+EQ+AFKCQVND + 
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 270

BLAST of PI0008827 vs. ExPASy TrEMBL
Match: A0A5B6WLL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium australe OX=47621 GN=EPI10_022275 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.0e-28
Identity = 72/119 (60.50%), Postives = 86/119 (72.27%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MT  K LFKDLD+S KS V+ GN           V IES  GTKFI +VLFV EIDQ+LL
Sbjct: 1   MTCGKKLFKDLDRSLKSSVRIGNREYLEVQGKGTVVIESCTGTKFISDVLFVLEIDQNLL 60

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPE 109
           S+ QL+E GFKV+FEEG CLI Y   + LF+IK Q+KSF L+PLE+EQ+AFKCQV+D E
Sbjct: 61  SVGQLVENGFKVMFEEGMCLILYFCSNVLFRIKMQNKSFSLNPLEEEQVAFKCQVSDSE 119

BLAST of PI0008827 vs. ExPASy TrEMBL
Match: A5ARY3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003274 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 65/118 (55.08%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGNVSIESYVGTKFIMEVLFVFEIDQSLLSISQLIEKGFK 60
           MT+D+ LFK+LDK+  SKVK GN   ES  G K+I +V++V +IDQ+LLS+ QLIEKGFK
Sbjct: 228 MTNDQALFKELDKTIISKVKIGN---ESLTGLKYITDVIYVPDIDQNLLSVGQLIEKGFK 287

Query: 61  VLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPELWHKRLEHFH 119
           V+FE+  C+I    G ++FK+K + KSF L+ +E EQIAF   +++ ELWH+RLEHFH
Sbjct: 288 VIFEDKWCMIKDVKGRDIFKVKMRAKSFSLNLMEDEQIAFSSTISNAELWHRRLEHFH 342

BLAST of PI0008827 vs. NCBI nr
Match: XP_038885771.1 (uncharacterized protein LOC120076063 [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-35
Identity = 88/120 (73.33%), Postives = 95/120 (79.17%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLDKSFKS+VK GN           VSIES V TK I EVLFV EIDQ+LL
Sbjct: 58  MTSDKELFKDLDKSFKSRVKIGNSEYLEVKGKDTVSIESCVETKLITEVLFVPEIDQNLL 117

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 110
           S+ QL+EKGFKVLFE+GKCLI  SNG++LFKIK QH  FLLDPLEKEQIAFKCQVND EL
Sbjct: 118 SVGQLVEKGFKVLFEKGKCLISDSNGNKLFKIKMQHTRFLLDPLEKEQIAFKCQVNDTEL 177

BLAST of PI0008827 vs. NCBI nr
Match: XP_038890984.1 (uncharacterized protein LOC120080400 [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-35
Identity = 86/123 (69.92%), Postives = 95/123 (77.24%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLDKSFKS++K GN           VSIES  GTK I +VLFV EIDQ+LL
Sbjct: 1   MTSDKELFKDLDKSFKSRMKIGNCEYLEVKGKGIVSIESCAGTKLITKVLFVPEIDQNLL 60

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 113
           S+ QL+EKGFKVLFEEGKCLIFYSNG+EL KIK QHKSF LDPLEK+QI FKCQV   +L
Sbjct: 61  SVGQLVEKGFKVLFEEGKCLIFYSNGNELLKIKMQHKSFSLDPLEKKQITFKCQVKRDKL 120

BLAST of PI0008827 vs. NCBI nr
Match: XP_022158688.1 (uncharacterized protein LOC111025149 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           M SDK LFKDLD+SFKS+VK GN            SIES VGTK I EVLFV  I Q+LL
Sbjct: 273 MXSDKELFKDLDRSFKSRVKIGNGEYLEVKGKXTXSIESCVGTKLITEVLFVPXIAQNLL 332

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 119
           S+ QL+EKGFKVLFE  KCLI  SNG+E FKIK QHKSF LDP+EK+QI  KCQVND EL
Sbjct: 333 SVGQLVEKGFKVLFEYEKCLISDSNGNEWFKIKMQHKSFSLDPVEKDQIVSKCQVNDTEL 392

BLAST of PI0008827 vs. NCBI nr
Match: KAA0043367.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.6e-34
Identity = 84/128 (65.62%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLD SFKSKVK GN           VS +S  GTK I +VLF+ EIDQ+LL
Sbjct: 1   MTSDKELFKDLDISFKSKVKIGNGAYLEVKGKGTVSTDSCAGTKLITKVLFISEIDQNLL 60

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 118
           ++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  QHKSF L+ LE+EQ+AFKCQVND + 
Sbjct: 61  NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQHKSFSLNLLEEEQVAFKCQVNDTKF 120

BLAST of PI0008827 vs. NCBI nr
Match: TYJ98110.1 (putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 8.5e-33
Identity = 82/128 (64.06%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 1   MTSDKVLFKDLDKSFKSKVKTGN-----------VSIESYVGTKFIMEVLFVFEIDQSLL 60
           MTSDK LFKDLD SFKS+VK GN           VS +S  GTK I +VLF+ EIDQ+LL
Sbjct: 151 MTSDKELFKDLDISFKSRVKIGNSAYLEVKGKGTVSTDSCAGTKLITKVLFIPEIDQNLL 210

Query: 61  SISQLIEKGFKVLFEEGKCLIFYSNGSELFKIKTQHKSFLLDPLEKEQIAFKCQVNDPEL 118
           ++ QL+EK FKVLFEEGKCLI  SNG+ELFKI  Q KSF L+ LE+EQ+AFKCQVND + 
Sbjct: 211 NVGQLVEKEFKVLFEEGKCLISDSNGNELFKINMQRKSFSLNLLEEEQVAFKCQVNDTKF 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWT99.8e-3567.44uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7TNI41.3e-3465.63Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BE464.1e-3364.06Putative transposon Ty5-1 protein YCL075W family OS=Cucumis melo var. makuwa OX=... [more]
A0A5B6WLL24.0e-2860.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium austral... [more]
A5ARY31.3e-2655.08Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003274 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038885771.11.8e-3573.33uncharacterized protein LOC120076063 [Benincasa hispida][more]
XP_038890984.13.1e-3569.92uncharacterized protein LOC120080400 [Benincasa hispida][more]
XP_022158688.12.0e-3467.44uncharacterized protein LOC111025149 [Momordica charantia][more]
KAA0043367.12.6e-3465.63Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ98110.18.5e-3364.06putative transposon Ty5-1 protein YCL075W family [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008827.1PI0008827.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding