PI0008820 (gene) Melon (PI 482460) v1

Overview
NamePI0008820
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr02: 20806658 .. 20807337 (-)
RNA-Seq ExpressionPI0008820
SyntenyPI0008820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGAAAATGTTTACGATTGGAAAATTCCCCCAATTTCAACGCCCTAAAACATATCTCACTCAAACTATATATAAATCCATACCATCACTCACAAATTTACCTCAATTCTCTTTCTCTTAATCCTCCAATGGCTGCAATTCACCGTTTCTTACTTCCGATTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCTATCTCCTCTGCCGACCATGGCCAGGATTCTAGTCAGCGAGGGGATAAGGATTCCGGCACCTCTTTGGCCGGAAAGATCATTATTAAAAGAGGAGTTCGGTCCGGCGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTTTTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATCTTTGACTCATATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAGTTAATTAAAGTTCGTTCGTTGGGATCAAATTGCAAAAACAATCCACCTTCTTCAAACTTCAATCTCTCTTCTCCTAATTGTGTTGTACTCAAACAGAGTTGCAAAAGTATATATTTCGTGATGATGAGTGTTTATGGTTATTAGGTGTTTGGTTATCAGTAAAAGCATGAGTTTATAATATAATATAAAGTTTTCAATTCAA

mRNA sequence

CCCGGAAAATGTTTACGATTGGAAAATTCCCCCAATTTCAACGCCCTAAAACATATCTCACTCAAACTATATATAAATCCATACCATCACTCACAAATTTACCTCAATTCTCTTTCTCTTAATCCTCCAATGGCTGCAATTCACCGTTTCTTACTTCCGATTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCTATCTCCTCTGCCGACCATGGCCAGGATTCTAGTCAGCGAGGGGATAAGGATTCCGGCACCTCTTTGGCCGGAAAGATCATTATTAAAAGAGGAGTTCGGTCCGGCGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTTTTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATCTTTGACTCATATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAGTTAATTAAAGTTCGTTCGTTGGGATCAAATTGCAAAAACAATCCACCTTCTTCAAACTTCAATCTCTCTTCTCCTAATTGTGTTGTACTCAAACAGAGTTGCAAAAGTATATATTTCGTGATGATGAGTGTTTATGGTTATTAGGTGTTTGGTTATCAGTAAAAGCATGAGTTTATAATATAATATAAAGTTTTCAATTCAA

Coding sequence (CDS)

ATGGCTGCAATTCACCGTTTCTTACTTCCGATTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCTATCTCCTCTGCCGACCATGGCCAGGATTCTAGTCAGCGAGGGGATAAGGATTCCGGCACCTCTTTGGCCGGAAAGATCATTATTAAAAGAGGAGTTCGGTCCGGCGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTTTTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGA

Protein sequence

MAAIHRFLLPIALISLLLFSESLAAISSADHGQDSSQRGDKDSGTSLAGKIIIKRGVRSGVIAGRSTTSSSARVSSSFFNVGSVICFNIAFVFAMFL
Homology
BLAST of PI0008820 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 1  MAAIHRFLLPIALISLLLFSESLAAISSADHGQDSSQRGDKDSGTSLAGKIIIKRGVRSG 60
          MAAIHRFLLP+ALISLLLFSESLAAISS DHGQ+S++RGDK S TSLAGKII KRGVRSG
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSNRRGDKGSDTSLAGKIISKRGVRSG 60

Query: 61 VIAGRSTTSSSARVSSSFFNVGSVICFNIAFVFAMFL 98
          V AGRST+SSSA++SSSFFNVGS+ICFNIAFVFAMFL
Sbjct: 61 VTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

BLAST of PI0008820 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.1e-31
Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 0

Query: 2  AAIHRFLLPIALISLLLFSESLAAISSADHGQDSSQRGDKDSGTSLAGKIIIKRGVRSGV 61
          AAIHRFLLPIALISLLLFSESL AISS+DH QDS++ GDKDSGTSL  KI IKRGVRSGV
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGV 62

Query: 62 IAGRSTTSSSARV-SSSFFNVGSVICFNIAFVFAMFL 98
          IAGRSTTSSSARV SSSFFNVGSVICFNIAFV AMFL
Sbjct: 63 IAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of PI0008820 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 0

Query: 1  MAAIHRFLLPIALISLLLFSESLAAISSADHGQDSSQRGDKDSGTSLAGKIIIKRGVRSG 60
          MAAIHRFLLP+ALISLLLFSESLAAISS DHGQ+S++RGDK S TSLAGKII KRGVRSG
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSNRRGDKGSDTSLAGKIISKRGVRSG 60

Query: 61 VIAGRSTTSSSARVSSSFFNVGSVICFNIAFVFAMFL 98
          V AGRST+SSSA++SSSFFNVGS+ICFNIAFVFAMFL
Sbjct: 61 VTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

BLAST of PI0008820 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 8.5e-31
Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 0

Query: 2  AAIHRFLLPIALISLLLFSESLAAISSADHGQDSSQRGDKDSGTSLAGKIIIKRGVRSGV 61
          AAIHRFLLPIALISLLLFSESL AISS+DH QDS++ GDKDSGTSL  KI IKRGVRSGV
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGV 62

Query: 62 IAGRSTTSSSARV-SSSFFNVGSVICFNIAFVFAMFL 98
          IAGRSTTSSSARV SSSFFNVGSVICFNIAFV AMFL
Sbjct: 63 IAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of PI0008820 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 58/111 (52.25%), Postives = 66/111 (59.46%), Query Frame = 0

Query: 1   MAAIHRFLLPIALISLLLFSESLAAISSADHGQD----------------SSQRGDKDSG 60
           MA I R L PI LI LLL SES   +SSAD+ QD                  QR DKD+G
Sbjct: 1   MAPIKR-LFPITLICLLLLSESF-PVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTG 60

Query: 61  TSLAGKIIIKRGVRSGVIAGRSTTSSSARVSSSFFNVGSVICFNIAFVFAM 96
           +SLA KI IKRG RS VI G S+ SSS+RV    FN+ SVICF  AF FA+
Sbjct: 61  SSLAEKISIKRGARSAVIGGHSSISSSSRVPP--FNIASVICFVFAFAFAL 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCG45.8e-3386.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYV94.1e-3188.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0035100.11.2e-3286.60hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597... [more]
KGN65176.18.5e-3188.66hypothetical protein Csa_019975 [Cucumis sativus][more]
KAG6587814.11.1e-0952.25hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008820.1PI0008820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane