PI0008808 (gene) Melon (PI 482460) v1

Overview


Name	PI0008808
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr11: 18974445 .. 18974663 (+)
RNA-Seq Expression	PI0008808
Synteny	PI0008808

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAAGAAGAAACCATTGCTAAGTATAATGTCAAAGTTCGTGATATTTCAAATGAATCCTTCTCTTTGGGCGAAAAATTATCTGATGAGAAATTGGTTCGCAAAGTTCTTCGGTCTCTTCCTAAAAGATTCAACATGAAGGTTACTGCTATCGAAGAGGCTAATGATATCTCCACAATGAAACTAGATGAGTTAATCGGATCTCTGCATACATGA

mRNA sequence

ATGCTGGAAGAAGAAACCATTGCTAAGTATAATGTCAAAGTTCGTGATATTTCAAATGAATCCTTCTCTTTGGGCGAAAAATTATCTGATGAGAAATTGGTTCGCAAAGTTCTTCGGTCTCTTCCTAAAAGATTCAACATGAAGGTTACTGCTATCGAAGAGGCTAATGATATCTCCACAATGAAACTAGATGAGTTAATCGGATCTCTGCATACATGA

Coding sequence (CDS)

ATGCTGGAAGAAGAAACCATTGCTAAGTATAATGTCAAAGTTCGTGATATTTCAAATGAATCCTTCTCTTTGGGCGAAAAATTATCTGATGAGAAATTGGTTCGCAAAGTTCTTCGGTCTCTTCCTAAAAGATTCAACATGAAGGTTACTGCTATCGAAGAGGCTAATGATATCTCCACAATGAAACTAGATGAGTTAATCGGATCTCTGCATACATGA

Protein sequence

MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDISTMKLDELIGSLHT

Homology

[Close]

BLAST of PI0008808 vs. ExPASy TrEMBL
Match: A0A392RFB6 (Gag-pol polyprotein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
          M E+ETI+K+N ++RDI+N  F+LGEK+S+EKLVRK LRSLPKRFNMKVTAIEEA D+ST
Sbjct: 1  MDEDETISKFNTRLRDIANSPFALGEKMSEEKLVRKTLRSLPKRFNMKVTAIEEAQDLST 60

Query: 61 MKLDELIGSLHT 73
          +K+DELIGSL T
Sbjct: 61 IKVDELIGSLQT 72

[Close]

BLAST of PI0008808 vs. ExPASy TrEMBL
Match: A0A5A7TMW2 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00230 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETIA++NV+V DI+NES + GEK+SD KLVRKVLRSLP +FNMKVTAIEEAND+S 
Sbjct: 116 MTEDETIAEFNVRVLDIANESDAFGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 175

Query: 61  MKLDELIGSLHT 73
           MKLDEL GSL T
Sbjct: 176 MKLDELFGSLRT 187

[Close]

BLAST of PI0008808 vs. ExPASy TrEMBL
Match: A0A2K3L4M7 (Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g029375 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.4e-20
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETI ++N ++RDI+N SFSL EK+S+EKLVRK+LRSLPKRF+MKVTAIEEA D+ST
Sbjct: 83  MDEDETILEFNARLRDIANTSFSLNEKMSEEKLVRKILRSLPKRFDMKVTAIEEAQDLST 142

Query: 61  MKLDELIGSLHT 73
           MK+DELIGSL T
Sbjct: 143 MKVDELIGSLQT 154

[Close]

BLAST of PI0008808 vs. ExPASy TrEMBL
Match: A0A2K3PLY8 (Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g013018 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.1e-20
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETI+++N ++RDI+N SF+LG K+S+EKL RK+LRSLPKRFNMKVT IEEA D+ST
Sbjct: 110 MDEDETISEFNTRLRDIANSSFALGGKMSEEKLARKILRSLPKRFNMKVTTIEEAQDLST 169

Query: 61  MKLDELIGSLHT 73
           MK+DELIGSL T
Sbjct: 170 MKVDELIGSLQT 181

[Close]

BLAST of PI0008808 vs. ExPASy TrEMBL
Match: A0A5A7TGK3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001130 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
          M EEETIA++NV V DI+NE   LGEK+SD KLVRKVLRSLP +FNMKVTAIEEAND+S 
Sbjct: 1  MTEEETIAEFNVPVLDIANELDVLGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 60

Query: 61 MKLDELIGSLHT 73
          MKLDEL GSL T
Sbjct: 61 MKLDELFGSLRT 72

[Close]

BLAST of PI0008808 vs. NCBI nr
Match: MCI34724.1 (gag-pol polyprotein [Trifolium medium])

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
          M E+ETI+K+N ++RDI+N  F+LGEK+S+EKLVRK LRSLPKRFNMKVTAIEEA D+ST
Sbjct: 1  MDEDETISKFNTRLRDIANSPFALGEKMSEEKLVRKTLRSLPKRFNMKVTAIEEAQDLST 60

Query: 61 MKLDELIGSLHT 73
          +K+DELIGSL T
Sbjct: 61 IKVDELIGSLQT 72

[Close]

BLAST of PI0008808 vs. NCBI nr
Match: KAA0043137.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23923.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETIA++NV+V DI+NES + GEK+SD KLVRKVLRSLP +FNMKVTAIEEAND+S 
Sbjct: 116 MTEDETIAEFNVRVLDIANESDAFGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 175

Query: 61  MKLDELIGSLHT 73
           MKLDEL GSL T
Sbjct: 176 MKLDELFGSLRT 187

[Close]

BLAST of PI0008808 vs. NCBI nr
Match: PNX73473.1 (gag-protease polyprotein, partial [Trifolium pratense])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETI ++N ++RDI+N SFSL EK+S+EKLVRK+LRSLPKRF+MKVTAIEEA D+ST
Sbjct: 83  MDEDETILEFNARLRDIANTSFSLNEKMSEEKLVRKILRSLPKRFDMKVTAIEEAQDLST 142

Query: 61  MKLDELIGSLHT 73
           MK+DELIGSL T
Sbjct: 143 MKVDELIGSLQT 154

[Close]

BLAST of PI0008808 vs. NCBI nr
Match: PNY16301.1 (gag-protease polyprotein [Trifolium pratense])

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
           M E+ETI+++N ++RDI+N SF+LG K+S+EKL RK+LRSLPKRFNMKVT IEEA D+ST
Sbjct: 110 MDEDETISEFNTRLRDIANSSFALGGKMSEEKLARKILRSLPKRFNMKVTTIEEAQDLST 169

Query: 61  MKLDELIGSLHT 73
           MK+DELIGSL T
Sbjct: 170 MKVDELIGSLQT 181

[Close]

BLAST of PI0008808 vs. NCBI nr
Match: KAA0041176.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MLEEETIAKYNVKVRDISNESFSLGEKLSDEKLVRKVLRSLPKRFNMKVTAIEEANDIST 60
          M EEETIA++NV V DI+NE   LGEK+SD KLVRKVLRSLP +FNMKVTAIEEAND+S 
Sbjct: 1  MTEEETIAEFNVPVLDIANELDVLGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 60

Query: 61 MKLDELIGSLHT 73
          MKLDEL GSL T
Sbjct: 61 MKLDELFGSLRT 72

The following BLAST results are available for this feature:

BLAST of PI0008808 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392RFB6	1.1e-20	73.61	Gag-pol polyprotein OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A5A7TMW2	2.4e-20	75.00	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A2K3L4M7	2.4e-20	73.61	Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g0293...	[more]
A0A2K3PLY8	7.1e-20	70.83	Gag-protease polyprotein OS=Trifolium pratense OX=57577 GN=L195_g013018 PE=4 SV=...	[more]
A0A5A7TGK3	9.2e-20	76.39	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G...	[more]

BLAST of PI0008808 vs. NCBI nr


Match Name	E-value	Identity	Description
MCI34724.1	2.3e-20	73.61	gag-pol polyprotein [Trifolium medium]	[more]
KAA0043137.1	5.0e-20	75.00	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23923.1 gag-proteinase...	[more]
PNX73473.1	5.0e-20	73.61	gag-protease polyprotein, partial [Trifolium pratense]	[more]
PNY16301.1	1.5e-19	70.83	gag-protease polyprotein [Trifolium pratense]	[more]
KAA0041176.1	1.9e-19	76.39	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008808 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..71 e-value: 8.2E-11 score: 41.8
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..71
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008808.1	PI0008808.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding