PI0008689 (gene) Melon (PI 482460) v1

Overview


Name	PI0008689
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Location	chr12: 8336689 .. 8336985 (+)
RNA-Seq Expression	PI0008689
Synteny	PI0008689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAAAGGAATGAGTTTTTGCAGTTGCCACAAGGTAGCTTGTCAGTGGCAGAGTACGAGAAGAAGTTTACAAAATTGTCTAAGTATTCATTGGCATTAGTGGCTGACGAGAGAGATAAGTGTAGAAGGTTTGAAGAAAGACTAAGGATGGACATACGAACCTCAGTGACAACAAGTGTTGCATGGGAAGATTTCTTAAAGTTGGTAGATGTTGCATTGAGAGTAGAAAGAAGTTTAGTTGACGATAAGAAAAAAAAAGAAGGAATTAAGCAACCAAGTGGAACACATAGATAG

mRNA sequence

ATGAGAAAAAGGAATGAGTTTTTGCAGTTGCCACAAGGTAGCTTGTCAGTGGCAGAGTACGAGAAGAAGTTTACAAAATTGTCTAAGTATTCATTGGCATTAGTGGCTGACGAGAGAGATAAGTGTAGAAGGTTTGAAGAAAGACTAAGGATGGACATACGAACCTCAGTGACAACAAGTGTTGCATGGGAAGATTTCTTAAAGTTGGTAGATGTTGCATTGAGAGTAGAAAGAAGTTTAGTTGACGATAAGAAAAAAAAAGAAGGAATTAAGCAACCAAGTGGAACACATAGATAG

Coding sequence (CDS)

ATGAGAAAAAGGAATGAGTTTTTGCAGTTGCCACAAGGTAGCTTGTCAGTGGCAGAGTACGAGAAGAAGTTTACAAAATTGTCTAAGTATTCATTGGCATTAGTGGCTGACGAGAGAGATAAGTGTAGAAGGTTTGAAGAAAGACTAAGGATGGACATACGAACCTCAGTGACAACAAGTGTTGCATGGGAAGATTTCTTAAAGTTGGTAGATGTTGCATTGAGAGTAGAAAGAAGTTTAGTTGACGATAAGAAAAAAAAAGAAGGAATTAAGCAACCAAGTGGAACACATAGATAG

Protein sequence

MRKRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVAWEDFLKLVDVALRVERSLVDDKKKKEGIKQPSGTHR

Homology

[Close]

BLAST of PI0008689 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-19
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           K NEF++L QG+++VAEYEKK+T+LSKY+  ++ DE ++C+RFEE LR +IRT VT    
Sbjct: 162 KHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACAD 221

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF KLV+VALRVE+SL + K+++E  K
Sbjct: 222 WNDFSKLVEVALRVEKSLNERKREREASK 250

[Close]

BLAST of PI0008689 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KRNEFL+L QGS+++AEYEKK+T+LS Y+  ++ DE ++C+RFEE LR +IRT VT    
Sbjct: 150 KRNEFLRLTQGSMTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACAD 209

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF KLV+ ALRVE+SL + K+++E  K
Sbjct: 210 WNDFSKLVEAALRVEKSLNERKQERETSK 238

[Close]

BLAST of PI0008689 vs. ExPASy TrEMBL
Match: A0A5D3DIE3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00440 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KR+EFLQL QGSLSVAEYE+K+T+LS+ +  +VA E D+CRRFE  LR +IRT VT    
Sbjct: 202 KRDEFLQLKQGSLSVAEYERKYTELSQCAKVIVASESDRCRRFERGLRFEIRTPVTAIAK 261

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKE---GIKQPSG 96
           W +F +LV++ALRVE+S+V++K   E   G+   SG
Sbjct: 262 WTNFSQLVEIALRVEQSIVEEKSAIELSRGVSTTSG 297

[Close]

BLAST of PI0008689 vs. ExPASy TrEMBL
Match: A0A5D3BBS3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold791G00070 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 49/86 (56.98%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KR+EFL L QGSLSVAEYE+K+T+LS+Y+  +VA E D+CRRFE  LR +IRT +TT   
Sbjct: 126 KRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERELRFEIRTPITTIAK 185

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKE 89
           W +F +LV+ ALRVE+S+ ++K   E
Sbjct: 186 WTNFSQLVETALRVEQSITEEKSAVE 211

[Close]

BLAST of PI0008689 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.3e-18
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KRNEFL+L QGS++VAEYEKK+T+LSKY+  ++ DE ++ +RFEE LR +IRTSVT    
Sbjct: 244 KRNEFLRLTQGSMTVAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACAD 303

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF KLV+ ALRV +SL + K+++E  K
Sbjct: 304 WNDFSKLVEAALRVGKSLNERKRERETSK 332

[Close]

BLAST of PI0008689 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           K NEF++L QG+++VAEYEKK+T+LSKY+  ++ DE ++C+RFEE LR +IRT VT    
Sbjct: 162 KHNEFVRLTQGTMTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACAD 221

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF KLV+VALRVE+SL + K+++E  K
Sbjct: 222 WNDFSKLVEVALRVEKSLNERKREREASK 250

[Close]

BLAST of PI0008689 vs. NCBI nr
Match: XP_038890030.1 (uncharacterized protein LOC120079741 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 49/89 (55.06%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KR+EFL+L QG++SV EYE+KFT+LS+Y+L ++A+E+D+CR+FE+ LR +I+T VT++  
Sbjct: 138 KRDEFLRLTQGTMSVVEYEQKFTELSQYALPIIAEEKDRCRKFEQGLRKEIKTPVTSTAN 197

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF +LV+ A RVERSL DD++   G K
Sbjct: 198 WLDFNQLVERATRVERSLADDEQLPRGSK 226

[Close]

BLAST of PI0008689 vs. NCBI nr
Match: XP_038889215.1 (uncharacterized protein LOC120079100 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 48/83 (57.83%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           K++EFL+L QG+L+V EYE+KFTKL +Y+L ++A+E D+CRRFE  LR +IRT VT++  
Sbjct: 135 KKDEFLRLVQGTLTVTEYEQKFTKLPQYALPIIAEENDRCRRFENVLRKEIRTPVTSTAN 194

Query: 63  WEDFLKLVDVALRVERSLVDDKK 86
           W DF +LV++A+RVE+SLVDD++
Sbjct: 195 WLDFNQLVEIAIRVEQSLVDDEQ 217

[Close]

BLAST of PI0008689 vs. NCBI nr
Match: XP_038904244.1 (uncharacterized protein LOC120090589 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 49/86 (56.98%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KRNEFL+L QG++SVAEYEKK+T+LSKY+++++ D+RD+CRRF++ LR DIRT VT SV 
Sbjct: 123 KRNEFLKLVQGTMSVAEYEKKYTELSKYAISVIEDKRDRCRRFKDGLREDIRTPVTASVE 182

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKE 89
             DF +LV+  +RVERS+ + + ++E
Sbjct: 183 CNDFAQLVETTMRVERSISEKRIERE 208

[Close]

BLAST of PI0008689 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 3   KRNEFLQLPQGSLSVAEYEKKFTKLSKYSLALVADERDKCRRFEERLRMDIRTSVTTSVA 62
           KRNEFL+L QGS+++AEYEKK+T+LS Y+  ++ DE ++C+RFEE LR +IRT VT    
Sbjct: 150 KRNEFLRLTQGSMTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACAD 209

Query: 63  WEDFLKLVDVALRVERSLVDDKKKKEGIK 92
           W DF KLV+ ALRVE+SL + K+++E  K
Sbjct: 210 WNDFSKLVEAALRVEKSLNERKQERETSK 238

The following BLAST results are available for this feature:

BLAST of PI0008689 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BB91	3.7e-19	56.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UZM6	1.4e-18	56.18	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DIE3	3.1e-18	55.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BBS3	5.3e-18	56.98	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TBS0	5.3e-18	57.30	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of PI0008689 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ95881.1	7.6e-19	56.18	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
XP_038890030.1	1.7e-18	55.06	uncharacterized protein LOC120079741 [Benincasa hispida]	[more]
XP_038889215.1	1.7e-18	57.83	uncharacterized protein LOC120079100 [Benincasa hispida]	[more]
XP_038904244.1	1.7e-18	56.98	uncharacterized protein LOC120090589 [Benincasa hispida]	[more]
KAA0060484.1	2.9e-18	56.18	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]

BLAST of PI0008689 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 3..88
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008689.1	PI0008689.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding