PI0008678 (gene) Melon (PI 482460) v1

Overview
NamePI0008678
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr01: 14083974 .. 14086235 (+)
RNA-Seq ExpressionPI0008678
SyntenyPI0008678
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACAACAACGAAGTCCCTTTGAACAGAAACAACAATGTCGCCCTAGGACAAGACAACTCCATCCTCGTAGCCCATGACGTAAATAGACCCATCAGGGGGTACGCCTCGCCTAACTTGTATGATTTCAACCCTGGTATCACCTTCCCCGTCTTTGGCGCTAATGCCAGATTCGAGATGAAGTTGATCATGCTTCAGATAATCCAAACTATTGGTCAGTTCGGGGGACATCCAAAAGAAGACCCACATGACCACATTAAGAGTTTCTACTCAATTTGTTCCTCATTCCACATCTCCAATATTACACAAAAGGAGCTATGTTTTGCATTATTCCTGCTTACTCTGAGGGATGAGGTGAAATGATGGGCCAGATTGCTAGACGCATGGGAAATAACCACATGGACTCAGTTGGTACAAAAGTTCATGAGGAAATTTTTCCTTCCCCACAAGAATGTCAGGCAAAGGAGGGACATAATGAATTTTGAGCAGCAAGAAAGGGAAACCCTACATGATGCGTGGAATAGATATAAAAGGTTGATTAAGGCATACCTTCACAATGGCATACCTGATTGCATCCTAATGGAGGTGTTCTACACCGGGCTAAGCAAAGTAACACAGTAGGCTATTGATGCTGTATTTGTGGGTGGGATGTTGAAGAACATGTACACCCAGATTAAGACTATGCTGGACTCTATGGTCATCAACAATCAAGAATGAGAAGATAATGATTTTGGCTCTCACCATGGAAGGAGGCGAGGAAATGAAAAAGGAGTTGATAGAAATGCAGTAGTGGTTGTAAACCCTAGTTTCTAAGTATTTTGAAAGTTGAAAAGTTGTTGTGTTGTTGATGATTAGGTAGCCATGTTCAAGGAAAGGCAAATTGTTATTAAAGCTTAAATCACGGACAATCTCAAGGAAATTCGGGCAAGATTTAAGGAATCTCAGGCAAATTTTAAGAGTACACGGACAAAATTGGAACAAAAGTGAAATCCCGAGCTAATTTGGTGGATCTCGAGCGAGATGGAAGGAAAAAGCTTTAACCCTAGGCTAAACTTGGTGCTAGTCGATCGAGATGAAGAATAGAAAACATTGGAGTTGAGTTCTCGAACCATCTCAGGACCGAGTCCAATCGAGATTGCAAATAGAGAAAGGGATTTTAAAAGCTCTTGGGCCTTCCCGAGGCTGTGTTTGGTCGAGATTGGAGGTAGAGAGGTGGTCTGGGAAGGGGTGTGATAGTGGCATTGCAAGGACAGATTACCGCCATGAACAATCTACTGCAATCCATAGCGTTAACGCAAGTAAATGTTGCAAGATGATCTGTTCAAATGGTAAAACAAATGGAGGATATTGGACGTGTGGGATGCAGAGGTCCTCACAACACCGAGGCATGCCCACAAAACACTGAAACTATCGCGTTAGTATGAAACGATCCGTACTTCAACACTTACAACTCTAGTTGGAGGACCCATCCTAACTTTAGGATGGGGAGGAACGAGTCAACAACAACAAGGGCGACAAGGTGACCATGGTGGAGGACGTAACGAAGCATCTGACTATCGCCAAAGACACCATAACAATAGGTCACACAACCATCCACATCTTCAATATCAAGGCCACACTGCATCTTCATCATCATCATCATTATCATCATCATCATCCTTAATGGAGAACCTCCTCCAAGAGTACATGCAAAAAAATGATGCCCTTCTACAGAGCCAAACAATGTCTATTCGTAATTTAGAGTTACAAATAGGGTAAATTTTCAGTGATATCTCTAGAAGACCAAAGGGATTGATAACTTGTAGAAATACAAGTTATTGTAACCTTTTAGGTAGAATAATGAAGTCGTAATGCATCAAATAGAAAGAAAATGATATAATATGATAGATGTAGAGGATAAGTTGTATCGCAGAATGCAAAAGAGCTTTATTCTCGTTTTACACATTTTTCAAGATATATGCAGGTTTTATGCAAAAATAGAAGTACCCACGCGAGGAAAAAGTCAGGCGAGGAACCATGCGGACAATTAGGCGACTCACAACGCAAAGCAAGGCGATTCTAAGCACTAGCAGACAAACTAGTGTTGAAGACGTCAGAAAGGACATATGCGGCATCGCTGCAGCTTGGTCAGAAGAATTAATACCACCAAGTATCCTGTCACATCGCACCTCGCCTATAAATAGCGGTCACTTCTTTAATCACGGACATGCGAAAATCCGGAGAGCGAGTCCCATTCTTCCACTCTTTTCCTCTTTCTAG

mRNA sequence

ATGAAAAACAACAACGAAGTCCCTTTGAACAGAAACAACAATGTCGCCCTAGGACAAGACAACTCCATCCTCGTAGCCCATGACGTAAATAGACCCATCAGGGGGTACGCCTCGCCTAACTTGTATGATTTCAACCCTGGTATCACCTTCCCCGTCTTTGGCGCTAATGCCAGATTCGAGATGAAGTTGATCATGCTTCAGATAATCCAAACTATTGGTCAGTTCGGGGGACATCCAAAAGAAGACCCACATGACCACATTAAGAGTTTCTACTCAATTTGTTCCTCATTCCACATCTCCAATATTACACAAAAGGAGCTATGTTTTGCATTATTCCTGCTTACTCTGAGGGATGAGGACCGAGTCCAATCGAGATTGCAAATAGAGAAAGGGATTTTAAAAGCTCTTGGGCCTTCCCGAGGCTGTGTTTGGTCGAGATTGGAGGTAGAGAGGTGGTCTGGGAAGGGGTGTGATAGTGGCATTGCAAGGACAGATTACCGCCATGAACAATCTACTGCAATCCATAGCGTTAACGCAAGATGGGGAGGAACGAGTCAACAACAACAAGGGCGACAAGGTGACCATGGTGGAGGACGTAACGAAGCATCTGACTATCGCCAAAGACACCATAACAATAGATATATGCAGAAGTACCCACGCGAGGAAAAAGTCAGGCGAGGAACCATGCGGACAATTAGGCGACTCACAACGCAAAGCAAGGCGATTCTAAGCACTAGCAGACAAACTAGTGTTGAAGACGTCAGAAAGGACATATGCGGCATCGCTGCAGCTTGGTCAGAAGAATTAATACCACCAAGTATCCTGTCACATCGCACCTCGCCTATAAATAGCGGTCACTTCTTTAATCACGGACATGCGAAAATCCGGAGAGCGAGTCCCATTCTTCCACTCTTTTCCTCTTTCTAG

Coding sequence (CDS)

ATGAAAAACAACAACGAAGTCCCTTTGAACAGAAACAACAATGTCGCCCTAGGACAAGACAACTCCATCCTCGTAGCCCATGACGTAAATAGACCCATCAGGGGGTACGCCTCGCCTAACTTGTATGATTTCAACCCTGGTATCACCTTCCCCGTCTTTGGCGCTAATGCCAGATTCGAGATGAAGTTGATCATGCTTCAGATAATCCAAACTATTGGTCAGTTCGGGGGACATCCAAAAGAAGACCCACATGACCACATTAAGAGTTTCTACTCAATTTGTTCCTCATTCCACATCTCCAATATTACACAAAAGGAGCTATGTTTTGCATTATTCCTGCTTACTCTGAGGGATGAGGACCGAGTCCAATCGAGATTGCAAATAGAGAAAGGGATTTTAAAAGCTCTTGGGCCTTCCCGAGGCTGTGTTTGGTCGAGATTGGAGGTAGAGAGGTGGTCTGGGAAGGGGTGTGATAGTGGCATTGCAAGGACAGATTACCGCCATGAACAATCTACTGCAATCCATAGCGTTAACGCAAGATGGGGAGGAACGAGTCAACAACAACAAGGGCGACAAGGTGACCATGGTGGAGGACGTAACGAAGCATCTGACTATCGCCAAAGACACCATAACAATAGATATATGCAGAAGTACCCACGCGAGGAAAAAGTCAGGCGAGGAACCATGCGGACAATTAGGCGACTCACAACGCAAAGCAAGGCGATTCTAAGCACTAGCAGACAAACTAGTGTTGAAGACGTCAGAAAGGACATATGCGGCATCGCTGCAGCTTGGTCAGAAGAATTAATACCACCAAGTATCCTGTCACATCGCACCTCGCCTATAAATAGCGGTCACTTCTTTAATCACGGACATGCGAAAATCCGGAGAGCGAGTCCCATTCTTCCACTCTTTTCCTCTTTCTAG

Protein sequence

MKNNNEVPLNRNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKLIMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNITQKELCFALFLLTLRDEDRVQSRLQIEKGILKALGPSRGCVWSRLEVERWSGKGCDSGIARTDYRHEQSTAIHSVNARWGGTSQQQQGRQGDHGGGRNEASDYRQRHHNNRYMQKYPREEKVRRGTMRTIRRLTTQSKAILSTSRQTSVEDVRKDICGIAAAWSEELIPPSILSHRTSPINSGHFFNHGHAKIRRASPILPLFSSF
Homology
BLAST of PI0008678 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.8e-27
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 0

Query: 2   KNNNEVPLNRNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEM 61
           +NN  +P N+    A    N   +A D +RPIR YASPNLYDFNPGI +P F  N RFE+
Sbjct: 4   QNNQGIPANQ----AAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEI 63

Query: 62  KLIMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNITQKELCFALFLL 115
           KL+MLQIIQ  GQF  HP++DPHD+I++FYSIC+SFH+  I+ +EL F  F L
Sbjct: 64  KLVMLQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0008678 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.8e-25
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 4   NNEVPLNRNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKL 63
           NN VPL   N+   GQ N  L+AH+++ PIR Y S NLYDFN GI + VFG NA FE+K 
Sbjct: 6   NNVVPL---NSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKP 65

Query: 64  IMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNIT 104
           +MLQ+IQ  GQF G+  EDPH+HIKSFYSIC+SFH+SN +
Sbjct: 66  VMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0008678 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-23
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 3   NNNEVPLN-RNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEM 62
           N N   +N R  N+A   +N IL+AH++N PI  YASP+LY FN GIT+P FG NARF+M
Sbjct: 22  NQNLGDMNQRKANIA--SENPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKM 81

Query: 63  KLIMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNITQKELCFALFLLTLRDE 120
           K  ML +IQT  QFGG+  EDP DHIKS Y +CSSFH+  ++Q++L    F  TL+D+
Sbjct: 82  KPTMLHMIQTTVQFGGYLDEDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDD 136

BLAST of PI0008678 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-22
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 9   LNRNNNVA---LGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKLIM 68
           +N  NN A     + N   +AHD+++PI+ YASPNLYDFNPGI +  FG N  FE+K +M
Sbjct: 1   MNNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLM 60

Query: 69  LQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNIT 104
           L + Q  GQFGGHP EDP+DHI++FY IC+SF++  I+
Sbjct: 61  LYMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0008678 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 21  NSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKLIMLQIIQTIGQFGGHPK 80
           N I++A D  R IR YA+P   + NPGI  P   A  +FE+K +M Q++QT+GQF G P 
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQA-PQFELKPVMFQMLQTVGQFSGMPT 70

Query: 81  EDPHDHIKSFYSICSSFHISNITQKELCFALFLLTLRDEDR 122
           EDPH H++SF  +  SF I  ++++ L   LF  +LRD  R
Sbjct: 71  EDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRAR 110

BLAST of PI0008678 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-26
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 0

Query: 2   KNNNEVPLNRNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEM 61
           +NN  +P N+    A    N   +A D +RPIR YASPNLYDFNPGI +P F  N RFE+
Sbjct: 4   QNNQGIPANQ----AAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEI 63

Query: 62  KLIMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNITQKELCFALFLL 115
           KL+MLQIIQ  GQF  HP++DPHD+I++FYSIC+SFH+  I+ +EL F  F L
Sbjct: 64  KLVMLQIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0008678 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-24
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 4   NNEVPLNRNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKL 63
           NN VPL   N+   GQ N  L+AH+++ PIR Y S NLYDFN GI + VFG NA FE+K 
Sbjct: 6   NNVVPL---NSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKP 65

Query: 64  IMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNIT 104
           +MLQ+IQ  GQF G+  EDPH+HIKSFYSIC+SFH+SN +
Sbjct: 66  VMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0008678 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 122.5 bits (306), Expect = 6.5e-24
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 21  NSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKLIMLQIIQTIGQFGGHPK 80
           N I++AHD NRP+R YASPNLY+F PGI  P F  N RFEMK +MLQ++Q  GQFGG   
Sbjct: 69  NPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAGQFGGATG 128

Query: 81  EDPHDHIKSFYSICSSFHISNITQKELCFALFLLTLRDEDR 122
           EDPH H+KSF  ICS+F ++ + Q  +   LF  +LRDE R
Sbjct: 129 EDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEAR 169

BLAST of PI0008678 vs. NCBI nr
Match: KAA0045193.1 (hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK27359.1 hypothetical protein E5676_scaffold325G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 7.1e-23
Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 3   NNNEVPLN-RNNNVALGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEM 62
           N N   +N R  N+A   +N IL+AH++N PI  YASP+LY FN GIT+P FG NARF+M
Sbjct: 22  NQNLGDMNQRKANIA--SENPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKM 81

Query: 63  KLIMLQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNITQKELCFALFLLTLRDE 120
           K  ML +IQT  QFGG+  EDP DHIKS Y +CSSFH+  ++Q++L    F  TL+D+
Sbjct: 82  KPTMLHMIQTTVQFGGYLDEDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDD 136

BLAST of PI0008678 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-22
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0

Query: 9   LNRNNNVA---LGQDNSILVAHDVNRPIRGYASPNLYDFNPGITFPVFGANARFEMKLIM 68
           +N  NN A     + N   +AHD+++PI+ YASPNLYDFNPGI +  FG N  FE+K +M
Sbjct: 1   MNNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLM 60

Query: 69  LQIIQTIGQFGGHPKEDPHDHIKSFYSICSSFHISNIT 104
           L + Q  GQFGGHP EDP+DHI++FY IC+SF++  I+
Sbjct: 61  LYMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U78.8e-2755.75Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3BVN14.8e-2560.00Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7TNS83.5e-2353.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UDN82.9e-2253.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
U5CUI21.0e-1444.55Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
Match NameE-valueIdentityDescription
KAA0062403.11.8e-2655.75putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
TYK02149.11.0e-2460.00putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
WP_217833177.16.5e-2456.44retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0045193.17.1e-2353.39hypothetical protein E6C27_scaffold30G001940 [Cucumis melo var. makuwa] >TYK2735... [more]
KAA0051815.16.0e-2253.06hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008678.1PI0008678.1mRNA