PI0008658 (gene) Melon (PI 482460) v1

Overview


Name	PI0008658
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr02: 17647759 .. 17648190 (+)
RNA-Seq Expression	PI0008658
Synteny	PI0008658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGATCAAAGAAGGAGGATCCATAACACGGCCACCAGTTCTTGATGGAACAAACTATGCATATTGGAAAGCTCGTATGATTGCCTTTATAAAATCTATTGATAGTAAGACTTGGAAAGTCGTTGTTGTTGGTTGGGAGCCACCAACTGTCACTGTTGAAGGTAAATCTGTTTTAAAACCAAAAGAGATCTGGACAGATGTTGAAGATCAAGCCTTTCTAGGTAAATCAAGAGCCCTCAATGCCATTTATGATGGGGTTGATCAGAATGTTTTTAAATTGATAAATACATGTACTTCTGCAAAAGAAGCATGGAAAATTTTGGAGGTGGCTTATGAAGGTACATCTAAAGTTAAAACTTCTCGCTTACAATTGCTAAGTACAAAATTTGAATCTTTAAAAATGGTTGAAGAAGAGAAGATAGTTTAG

mRNA sequence

ATGGATATGATCAAAGAAGGAGGATCCATAACACGGCCACCAGTTCTTGATGGAACAAACTATGCATATTGGAAAGCTCGTATGATTGCCTTTATAAAATCTATTGATAGTAAGACTTGGAAAGTCGTTGTTGTTGGTTGGGAGCCACCAACTGTCACTGTTGAAGGTAAATCTGTTTTAAAACCAAAAGAGATCTGGACAGATGTTGAAGATCAAGCCTTTCTAGGTAAATCAAGAGCCCTCAATGCCATTTATGATGGGGTTGATCAGAATGTTTTTAAATTGATAAATACATGTACTTCTGCAAAAGAAGCATGGAAAATTTTGGAGGTGGCTTATGAAGGTACATCTAAAGTTAAAACTTCTCGCTTACAATTGCTAAGTACAAAATTTGAATCTTTAAAAATGGTTGAAGAAGAGAAGATAGTTTAG

Coding sequence (CDS)

ATGGATATGATCAAAGAAGGAGGATCCATAACACGGCCACCAGTTCTTGATGGAACAAACTATGCATATTGGAAAGCTCGTATGATTGCCTTTATAAAATCTATTGATAGTAAGACTTGGAAAGTCGTTGTTGTTGGTTGGGAGCCACCAACTGTCACTGTTGAAGGTAAATCTGTTTTAAAACCAAAAGAGATCTGGACAGATGTTGAAGATCAAGCCTTTCTAGGTAAATCAAGAGCCCTCAATGCCATTTATGATGGGGTTGATCAGAATGTTTTTAAATTGATAAATACATGTACTTCTGCAAAAGAAGCATGGAAAATTTTGGAGGTGGCTTATGAAGGTACATCTAAAGTTAAAACTTCTCGCTTACAATTGCTAAGTACAAAATTTGAATCTTTAAAAATGGTTGAAGAAGAGAAGATAGTTTAG

Protein sequence

MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVLKPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTSRLQLLSTKFESLKMVEEEKIV

Homology

[Close]

BLAST of PI0008658 vs. ExPASy TrEMBL
Match: A0A5A7SP99 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00320 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.9e-50
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M+MIKEGGS TRPPVLDG NYAYWKARM AF+KSID+KTWK V+  WEPPT+T++ KS  
Sbjct: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           K +  WTD EDQA LG SRALNAIY+  DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK
Sbjct: 61  KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLST 130
           TS LQLLS+
Sbjct: 121 TSLLQLLSS 127

[Close]

BLAST of PI0008658 vs. ExPASy TrEMBL
Match: A0A5A7TAN7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003180 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.1e-48
Identity = 93/142 (65.49%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPV DG NY YWK RMI F+K++D K W+V+V G+EPP VTV+G SV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KPK  WTD E+QA +G +RA+NAI++G+D NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M E+E +
Sbjct: 121 ISRLQLITSKFEALEMTEDESV 142

[Close]

BLAST of PI0008658 vs. ExPASy TrEMBL
Match: A0A5D3BCD8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.3e-48
Identity = 93/142 (65.49%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPV DG NY YWK RMI  IK++D K W+V+V G+EPP VTV+G SV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KPK  WTD E+QA +G +RA+NAI++GVD NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M ++E +
Sbjct: 121 ISRLQLITSKFEALEMTKDESV 142

[Close]

BLAST of PI0008658 vs. ExPASy TrEMBL
Match: A0A5A7SJ95 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00170 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 92/142 (64.79%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPVLDG NY+YWK RMI  IK++D K W+ +V G+EPP VT++  SVL
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KP+  WTDVE+QA +G +RA+NAI++GVD NVFKLIN+CT+ KEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            S LQL+++KFE LKM E+E +
Sbjct: 121 ISSLQLITSKFEVLKMTEDESV 142

[Close]

BLAST of PI0008658 vs. ExPASy TrEMBL
Match: A0A5D3B9V9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00980 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47
Identity = 88/142 (61.97%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPVLDG NY+YWK RMI FI+++D + W+ +V G++PP +T+ G SV 
Sbjct: 1   MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KP+  WTD E+Q+F+G +RALNAI++GVD NVFKLIN+C++AKEAWK LEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M E+E +
Sbjct: 121 ISRLQLITSKFEALRMTEDELV 142

[Close]

BLAST of PI0008658 vs. NCBI nr
Match: KAA0032368.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31640.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M+MIKEGGS TRPPVLDG NYAYWKARM AF+KSID+KTWK V+  WEPPT+T++ KS  
Sbjct: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           K +  WTD EDQA LG SRALNAIY+  DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK
Sbjct: 61  KRESDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLST 130
           TS LQLLS+
Sbjct: 121 TSLLQLLSS 127

[Close]

BLAST of PI0008658 vs. NCBI nr
Match: KAA0038419.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-48
Identity = 93/142 (65.49%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPV DG NY YWK RMI F+K++D K W+V+V G+EPP VTV+G SV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFFVKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KPK  WTD E+QA +G +RA+NAI++G+D NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGMDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M E+E +
Sbjct: 121 ISRLQLITSKFEALEMTEDESV 142

[Close]

BLAST of PI0008658 vs. NCBI nr
Match: TYJ96973.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-47
Identity = 93/142 (65.49%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPV DG NY YWK RMI  IK++D K W+V+V G+EPP VTV+G SV 
Sbjct: 1   MEIIREGPSASRPPVPDGKNYLYWKPRMIFSIKTLDEKAWRVLVAGYEPPMVTVDGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KPK  WTD E+QA +G +RA+NAI++GVD NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPKVDWTDAEEQASVGNARAINAIFNGVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M ++E +
Sbjct: 121 ISRLQLITSKFEALEMTKDESV 142

[Close]

BLAST of PI0008658 vs. NCBI nr
Match: KAA0025734.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 5.6e-47
Identity = 92/142 (64.79%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPVLDG NY+YWK RMI  IK++D K W+ +V G+EPP VT++  SVL
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KP+  WTDVE+QA +G +RA+NAI++GVD NVFKLIN+CT+ KEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            S LQL+++KFE LKM E+E +
Sbjct: 121 ISSLQLITSKFEVLKMTEDESV 142

[Close]

BLAST of PI0008658 vs. NCBI nr
Match: KAA0033522.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95666.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-47
Identity = 88/142 (61.97%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MDMIKEGGSITRPPVLDGTNYAYWKARMIAFIKSIDSKTWKVVVVGWEPPTVTVEGKSVL 60
           M++I+EG S +RPPVLDG NY+YWK RMI FI+++D + W+ +V G++PP +T+ G SV 
Sbjct: 1   MEIIREGPSTSRPPVLDGKNYSYWKPRMIFFIETLDGRAWRALVAGYDPPMITMNGVSVP 60

Query: 61  KPKEIWTDVEDQAFLGKSRALNAIYDGVDQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 120
           KP+  WTD E+Q+F+G +RALNAI++GVD NVFKLIN+C++AKEAWK LEVAYEGTSKVK
Sbjct: 61  KPEVDWTDAEEQSFVGNARALNAIFNGVDLNVFKLINSCSTAKEAWKTLEVAYEGTSKVK 120

Query: 121 TSRLQLLSTKFESLKMVEEEKI 143
            SRLQL+++KFE+L+M E+E +
Sbjct: 121 ISRLQLITSKFEALRMTEDELV 142

The following BLAST results are available for this feature:

BLAST of PI0008658 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SP99	5.9e-50	78.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G...	[more]
A0A5A7TAN7	1.1e-48	65.49	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]
A0A5D3BCD8	9.3e-48	65.49	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G...	[more]
A0A5A7SJ95	2.7e-47	64.79	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G...	[more]
A0A5D3B9V9	4.6e-47	61.97	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G...	[more]

BLAST of PI0008658 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032368.1	1.2e-49	78.29	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31640.1 gag-pol polyprotein [...	[more]
KAA0038419.1	2.3e-48	65.49	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96973.1	1.9e-47	65.49	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0025734.1	5.6e-47	64.79	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [...	[more]
KAA0033522.1	9.6e-47	61.97	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95666.1 gag-pol polyprotein [...	[more]

BLAST of PI0008658 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 77..142 e-value: 3.5E-10 score: 39.8
None	No IPR available	PANTHER	PTHR34676:SF8	MYOSIN-11-LIKE	coord: 4..142
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 4..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008658.1	PI0008658.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding