PI0008653 (gene) Melon (PI 482460) v1

Overview
NamePI0008653
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 16713464 .. 16714586 (+)
RNA-Seq ExpressionPI0008653
SyntenyPI0008653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGACCTTCTTCAACGTGATCAGGTACGTAAATACTGAAACTTGATTTTTTTATACTTTAGTATTCATTTATTTGTTTATAATGTAATATACAATATTTCAAATTATTTGAGAGCTTTACAAAAATGTATTGGACAATTTGCCCAATTTTGTAAGAACAGTCAAGACATATGGCGGACCATCAATCCTCTCATATGTTTTCATATTGGGGAGTGACATTATCCTGATAGGGTGATCAGACAGCTTGGTTTTAAACAAGATATCCCATCAGAATGCAATACTGAGCCACTTCTTCATAGCATTGATCTGAGAAATAAAGATTGGTCAGATAAGGTCGCACATTTGGTAGTGCGATGGCAATCTCGTAGAAGATTTATTGCAGCGGGAGCTTTGATTCAGCAATTCGATAGAGACGTGACTCAAGAATACATCAACTGGTATAATAATATTACACGACTCTACATCACTCGATCAGGTGCAGCTTTGGATCATCTGGTACATAATTAAATATTGTATAATTACTTTATATTATATACCAAATTAAATATTTTCTAATTTTTTTTGCAATTCACAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

mRNA sequence

ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

Coding sequence (CDS)

ATGTTTGACCTTCTTCAACGTGATCAGAGATCGAACAACATTAGAGTACGTGATGTTGCAGATGATCCACAACATGTTCTTGATATATCTAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACGATGTACCTATTGTACCTCCATCAGTTCATAGGGGACGTGCTCGAGTGGAAGAAGCTGAACTCGACGAAGTTTACCATAATGTGGAAGAGGTGCCTCCTATGACACGAACCCAGAGCCAGTCTAGTTATAGTAGCTCGATGACAATGATGCCAGCATTTGGCCCAGGGTATTATGATTTAGGGGCATGTACAGGATATTTTGATTCAGCTGTTGGTCCATCTTCCTCGTATATGGATGCTAGTCCATCAACTTCATACATGTATGGACACGGACGGGACCGTGAGAACATAATGAATATCAAAGTGTATCAGATCCACAAGAGTACCAACAAGAATCAGAGAATCAAGATGAGCAAGAGCCACATAGACTTCAAAGTCGTCGACGACAACCGACTCGAAATCGACGACGTCCGGGTTGTGGGACACATTGATTTATTTTAA

Protein sequence

MFDLLQRDQRSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTSYMYGHGRDRENIMNIKVYQIHKSTNKNQRIKMSKSHIDFKVVDDNRLEIDDVRVVGHIDLF
Homology
[Close]
BLAST of PI0008653 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     GY+D+ VGP SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 130 YMYGHGR 137
           YMYGHGR
Sbjct: 437 YMYGHGR 443

[Close]
BLAST of PI0008653 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0 

Query: 1   MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
           MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H M
Sbjct: 1   MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60

Query: 61  YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
           YD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D
Sbjct: 61  YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120

Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
                GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153

[Close]
BLAST of PI0008653 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 269 YMHGHKR 275

[Close]
BLAST of PI0008653 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 8.3e-44
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259

Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
           YM+GH R   E+   +  Y+  +ST    R +  +  I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297

[Close]
BLAST of PI0008653 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VY
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 159 YMHGHSR 165

[Close]
BLAST of PI0008653 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-45
Identity = 92/127 (72.44%), Postives = 103/127 (81.10%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDV +DPQ VLDI N+NERYME++H +YD+PIVPP VHR R RVEEAELDEVY
Sbjct: 317 RSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVY 376

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GY D     GY+D+ VGP SSYMD  PSTS
Sbjct: 377 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTS 436

Query: 130 YMYGHGR 137
           YMYGHGR
Sbjct: 437 YMYGHGR 443

[Close]
BLAST of PI0008653 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-44
Identity = 99/153 (64.71%), Postives = 110/153 (71.90%), Query Frame = 0 

Query: 1   MFDLLQRDQ-----------------RSNNIRVRDVADDPQHVLDISNSNERYMEELHYM 60
           MFDLLQRDQ                 RSNN R+RDVADD Q  LDI N+NERYMEE+H M
Sbjct: 1   MFDLLQRDQIIWEPYKDVIDNLLNFWRSNNARLRDVADDLQQFLDICNNNERYMEEIHNM 60

Query: 61  YDVPIVPPSVHRGRARVEEAELDEVYHNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYD 120
           YD+PIVPP VHRG  RVEEAELD+VYHNVEEVP  T+TQSQ+ Y S MTMMP F  GY D
Sbjct: 61  YDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCD 120

Query: 121 LGACTGYFDSAVGPSSSYMDASPSTSYMYGHGR 137
                GY+D+ VGPSSSY+D SPSTSYM+GH R
Sbjct: 121 FEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRR 153

[Close]
BLAST of PI0008653 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 5.9e-44
Identity = 90/127 (70.87%), Postives = 102/127 (80.31%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 149 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 208

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 209 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 268

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 269 YMHGHKR 275

[Close]
BLAST of PI0008653 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADDPQ VL+I N+N+RYMEE+H MYD+ IVPP VHRGR RVEEAELDEVY
Sbjct: 140 RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVY 199

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVPP T+TQSQ+ Y S MTMMP FG GYYD    TGY+D+ + PSS YMD  PS  
Sbjct: 200 HNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNF 259

Query: 130 YMYGHGRD-RENIMNIKVYQIHKSTNKNQRIKMSKSHI 167
           YM+GH R   E+   +  Y+  +ST    R +  +  I
Sbjct: 260 YMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPRGPI 297

[Close]
BLAST of PI0008653 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 90/127 (70.87%), Postives = 101/127 (79.53%), Query Frame = 0 

Query: 10  RSNNIRVRDVADDPQHVLDISNSNERYMEELHYMYDVPIVPPSVHRGRARVEEAELDEVY 69
           RSNN R+RDVADD Q  LDI N+NERYMEE+H MYD+PIVPP VHRG  RVEEAELD+VY
Sbjct: 39  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98

Query: 70  HNVEEVPPMTRTQSQSSYSSSMTMMPAFGPGYYDLGACTGYFDSAVGPSSSYMDASPSTS 129
           HNVEEVP  T+TQSQ+ Y S MTMMP F  GY D     GY+D+ VGPSSSY+D SPSTS
Sbjct: 99  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158

Query: 130 YMYGHGR 137
           YM+GH R
Sbjct: 159 YMHGHSR 165

The following BLAST results are available for this feature:
BLAST of PI0008653 vs.
Match NameE-valueIdentityDescription
BLAST of PI0008653 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJV73.4e-4572.44Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3BSG81.7e-4464.71GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TBF82.9e-4470.87Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH238.3e-4460.76Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7V3429.2e-4370.87Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of PI0008653 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23842.17.0e-4572.44serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK01176.13.5e-4464.71GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0038951.15.9e-4470.87mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.11.7e-4360.76mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0062642.11.9e-4270.87mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of PI0008653 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008653.1PI0008653.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance