PI0008613 (gene) Melon (PI 482460) v1

Overview


Name	PI0008613
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Location	chr10: 11913432 .. 11914662 (-)
RNA-Seq Expression	PI0008613
Synteny	PI0008613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGGACTTGCCTACATTCGGTGGAAAATTGGATGTTGAGGCATTTCTTGATTGGGTTAAAAATGTGGAAAGTTTCTTCGAGTATATGGAGACACCCAATGACAAGAAAAAAGTAAAGTTGGTTGCTTTAAAGCTAAAATCAAGTGCATCGACTTGGTGAGACCAAATTCACATCAACCGACAATTAATTGAAAAGGCTCCAATAAGAAGCTGGCCAATAATGTTGAAGATGATGAAAGAACATTTTTTATCGGCTGATTTTGAACAAATACTCTATCAATAGTATCAACAGTGCCAACAAGGTAATAGTACTGTGGGGGAGTATGTTAAAGAATTTCATTGTTTAAGTGCTAGGACTCGAACAAACAAGAGTGAGAACTACCAAATTGCTCGATTTGTTGATGGCCTCAAAGATGAAATACAAGAGAAACTTGATTTGCAACCTATAGTCTCACCAGCGGCAATTTCAATGGCCTATAAAGCCAAAGTCAAGTTGGAGACAAAGCAGAAAACAATCGGCATGAAGAAGAATCCTTCGGATAAGACAGTCACTCCTTACCAACGGAAAAATTACGATAGTTACAAGCATGGTCAAAGTTATAACTCAACAAGGGATAAAGAAGATCAACCAAACAAGCCCAACCAAAATTCAAAGAACGAAGAGACACCAACAAGAAAGGAGGATCCAATACTTATCAAAGACCGAATCTTGGTTTTTGTTACGCATACAACCAAAAACGGCATTTGTCTAATGAATGTCCTCAACAGAAGACGGGGGCATATGTTGAAGGTAAAGAAAGCTAAGAAGATGAAATGGTGCCAAATTCCGAAGATGTCAATGAGTTAGGTCCGGACGTGAAGAACAACTTTCTTGTGTTGTTCGAAGAATTCTACTCACCCCAAAAACCGAGACTCGTCCATAAAGACACTCATTATTCCGGACTTGTTGTACAATCAAAGGCTGCAACATAATGGATAGCAGAAGTAGCAAAAACATAGTCCGTTCAAAACTTGTGCAAGCCCTTAGTCTTAAATTAGGTCCACACTGACATCCTTACAAAGTTAGTTGCATCAAGAAGAGTGGCAAAGCACAGATCAATTCAACTTGCAATTCCCCTCTCTATCGGTAATTTTTATATAGATCAAACTATTTGTGACGTGTTTGACATGGATGTTCGCCATATTTTGTTTGGTTGTCCTTGGCAATATGACTTGCAAGCCACTCA

mRNA sequence

ATGAAAGTGGACTTGCCTACATTCGGTGGAAAATTGGATGTTGAGGCATTTCTTGATTGGGTTAAAAATGTGGAAAGTTTCTTCGAGTATATGGAGACACCCAATGACAAGAAAAAAGTAAAGACTCGAACAAACAAGAGTGAGAACTACCAAATTGCTCGATTTGTTGATGGCCTCAAAGATGAAATACAAGAGAAACTTGATTTGCAACCTATAGTCTCACCAGCGGCAATTTCAATGGCCTATAAAGCCAAAGTCAAGTTGGAGACAAAGCAGAAAACAATCGGCATGAAGAAGAATCCTTCGGATAAGACAGTCACTCCTTACCAACGGAAAAATTACGATAGTTACAAGCATGGTCAAAGTTATAACTCAACAAGGGATAAAGAAGATCAACCAAACAAGCCCAACCAAAATTCAAAGAACGAAGAGACACCAACAAGAAAGGAGGATCCAATACTTATCAAAGACCGAATCTTGGTTTTTGTTACGCATACAACCAAAAACGGCATTTGTCTAATGAATGTCCTCAACAGAAGACGGGGGCATATGTTGAAGGTAAAGAAAGCTAAGAAGATGAAATGGTGCCAAATTCCGAAGATGTCAATGAGTTAGGTCCGGACGTGAAGAACAACTTTCTTGTGTTGTTCGAAGAATTCTACTCACCCCAAAAACCGAGACTCGTCCATAAAGACACTCATTATTCCGGACTTGTTGTACAATCAAAGGCTGCAACATAATGGATAGCAGAAGTAGCAAAAACATAGTCCGTTCAAAACTTGTGCAAGCCCTTAGTCTTAAATTAGGTCCACACTGACATCCTTACAAAGTTAGTTGCATCAAGAAGAGTGGCAAAGCACAGATCAATTCAACTTGCAATTCCCCTCTCTATCGGTAATTTTTATATAGATCAAACTATTTGTGACGTGTTTGACATGGATGTTCGCCATATTTTGTTTGGTTGTCCTTGGCAATATGACTTGCAAGCCACTCA

Coding sequence (CDS)

ATGAAAGTGGACTTGCCTACATTCGGTGGAAAATTGGATGTTGAGGCATTTCTTGATTGGGTTAAAAATGTGGAAAGTTTCTTCGAGTATATGGAGACACCCAATGACAAGAAAAAAGTAAAGACTCGAACAAACAAGAGTGAGAACTACCAAATTGCTCGATTTGTTGATGGCCTCAAAGATGAAATACAAGAGAAACTTGATTTGCAACCTATAGTCTCACCAGCGGCAATTTCAATGGCCTATAAAGCCAAAGTCAAGTTGGAGACAAAGCAGAAAACAATCGGCATGAAGAAGAATCCTTCGGATAAGACAGTCACTCCTTACCAACGGAAAAATTACGATAGTTACAAGCATGGTCAAAGTTATAACTCAACAAGGGATAAAGAAGATCAACCAAACAAGCCCAACCAAAATTCAAAGAACGAAGAGACACCAACAAGAAAGGAGGATCCAATACTTATCAAAGACCGAATCTTGGTTTTTGTTACGCATACAACCAAAAACGGCATTTGTCTAATGAATGTCCTCAACAGAAGACGGGGGCATATGTTGAAGGTAAAGAAAGCTAAGAAGATGAAATGGTGCCAAATTCCGAAGATGTCAATGAGTTAG

Protein sequence

MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKKKVKTRTNKSENYQIARFVDGLKDEIQEKLDLQPIVSPAAISMAYKAKVKLETKQKTIGMKKNPSDKTVTPYQRKNYDSYKHGQSYNSTRDKEDQPNKPNQNSKNEETPTRKEDPILIKDRILVFVTHTTKNGICLMNVLNRRRGHMLKVKKAKKMKWCQIPKMSMS

Homology

[Close]

BLAST of PI0008613 vs. ExPASy TrEMBL
Match: A0A5D3CYP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00940 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.9e-31
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKKK--------------VKTRTNK 60
           MKVDL  F GKLDVEAFLDWVKNVESFFEYME   DKK                +TR NK
Sbjct: 1   MKVDLSNFSGKLDVEAFLDWVKNVESFFEYMEMVEDKKVKMVALKLKSGASVCARTRMNK 60

Query: 61  SENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQKTIGMKKNPSDKT 120
           SENYQ+A FVD LK+ I+++LDLQPI +   AISMA+KA++KLE ++   G KKN SDK 
Sbjct: 61  SENYQLASFVDRLKEGIRKQLDLQPIATLSIAISMAFKAEMKLEKRKIISGTKKNQSDKA 120

Query: 121 VTPYQRKNYDSYKHGQ 122
            T YQRKNYD+ K GQ
Sbjct: 121 FTSYQRKNYDNIKQGQ 136

[Close]

BLAST of PI0008613 vs. ExPASy TrEMBL
Match: A0A5D3CPR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00370 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 41  KTRTNKSENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQKTIGMKK 100
           +TRTN+SENYQIA+FVDGLK++I E++DLQPI +  AAISMA+KA++KLE +QK  G KK
Sbjct: 131 RTRTNESENYQIAKFVDGLKEDIHEQVDLQPIATLLAAISMAFKAEMKLEKRQKNNGTKK 190

Query: 101 NPSDKTVTPYQRKNYDSYKHGQSYNSTRDKEDQPNKPNQNSKNEETPTRKEDPILIKDRI 160
           N  DKT TPYQRKNYD+ +  Q + +++ KE Q +K NQ+ + +E   +K          
Sbjct: 191 NKWDKTFTPYQRKNYDNVRQVQGFGTSKAKE-QSSKANQSPRTQEISNKKSSSTNYPRPK 250

Query: 161 LVFVTHTTKNGICLMNVLNRRR 182
             F T  TK     +N  N +R
Sbjct: 251 WNFATGATKRDTYPINAHNGKR 271

[Close]

BLAST of PI0008613 vs. ExPASy TrEMBL
Match: A0A5A7UUZ0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002800 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19
Identity = 71/152 (46.71%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKK------KVK------------- 60
           MKVD   F  KLDVEAFL WVKNVES F+YME   DKK      K+K             
Sbjct: 1   MKVDFSNFSDKLDVEAFLYWVKNVESSFKYMEIAKDKKVKMVALKLKLGASAWWDQIQVN 60

Query: 61  --------------------------------TRTNKSENYQIARFVDGLKDEIQEKLDL 101
                                           T+TN+SEN QIARFVDGLK++I E+LDL
Sbjct: 61  CKQILYQQYQPCRQGNRKVAEYAEEFHYLSAGTQTNESENCQIARFVDGLKEDIHEQLDL 120

[Close]

BLAST of PI0008613 vs. ExPASy TrEMBL
Match: A0A5D3D505 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001460 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 37 KKKVKTRTNKSENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQK 94
          ++  +TRTNKSENYQIARFVDGLK++I E+LDLQP+ + PAAI M +KA++KLE +QK
Sbjct: 18 RRSARTRTNKSENYQIARFVDGLKEDIHEQLDLQPMATLPAAILMGFKAEMKLEKRQK 75

[Close]

BLAST of PI0008613 vs. ExPASy TrEMBL
Match: A0A5D3CH16 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001440 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 25/38 (65.79%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKK 39
           MK+DLPT+ GK D+E+FLDW+KN+E+FF YM+TP+ KK
Sbjct: 64  MKIDLPTYNGKRDIESFLDWIKNIENFFNYMDTPDRKK 101

[Close]

BLAST of PI0008613 vs. NCBI nr
Match: TYK16074.1 (hypothetical protein E5676_scaffold32G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 8.1e-31
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKKK--------------VKTRTNK 60
           MKVDL  F GKLDVEAFLDWVKNVESFFEYME   DKK                +TR NK
Sbjct: 1   MKVDLSNFSGKLDVEAFLDWVKNVESFFEYMEMVEDKKVKMVALKLKSGASVCARTRMNK 60

Query: 61  SENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQKTIGMKKNPSDKT 120
           SENYQ+A FVD LK+ I+++LDLQPI +   AISMA+KA++KLE ++   G KKN SDK 
Sbjct: 61  SENYQLASFVDRLKEGIRKQLDLQPIATLSIAISMAFKAEMKLEKRKIISGTKKNQSDKA 120

Query: 121 VTPYQRKNYDSYKHGQ 122
            T YQRKNYD+ K GQ
Sbjct: 121 FTSYQRKNYDNIKQGQ 136

[Close]

BLAST of PI0008613 vs. NCBI nr
Match: TYK13853.1 (uncharacterized protein E5676_scaffold832G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 41  KTRTNKSENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQKTIGMKK 100
           +TRTN+SENYQIA+FVDGLK++I E++DLQPI +  AAISMA+KA++KLE +QK  G KK
Sbjct: 131 RTRTNESENYQIAKFVDGLKEDIHEQVDLQPIATLLAAISMAFKAEMKLEKRQKNNGTKK 190

Query: 101 NPSDKTVTPYQRKNYDSYKHGQSYNSTRDKEDQPNKPNQNSKNEETPTRKEDPILIKDRI 160
           N  DKT TPYQRKNYD+ +  Q + +++ KE Q +K NQ+ + +E   +K          
Sbjct: 191 NKWDKTFTPYQRKNYDNVRQVQGFGTSKAKE-QSSKANQSPRTQEISNKKSSSTNYPRPK 250

Query: 161 LVFVTHTTKNGICLMNVLNRRR 182
             F T  TK     +N  N +R
Sbjct: 251 WNFATGATKRDTYPINAHNGKR 271

[Close]

BLAST of PI0008613 vs. NCBI nr
Match: KAA0057976.1 (uncharacterized protein E6C27_scaffold274G002800 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-19
Identity = 71/152 (46.71%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKK------KVK------------- 60
           MKVD   F  KLDVEAFL WVKNVES F+YME   DKK      K+K             
Sbjct: 1   MKVDFSNFSDKLDVEAFLYWVKNVESSFKYMEIAKDKKVKMVALKLKLGASAWWDQIQVN 60

Query: 61  --------------------------------TRTNKSENYQIARFVDGLKDEIQEKLDL 101
                                           T+TN+SEN QIARFVDGLK++I E+LDL
Sbjct: 61  CKQILYQQYQPCRQGNRKVAEYAEEFHYLSAGTQTNESENCQIARFVDGLKEDIHEQLDL 120

[Close]

BLAST of PI0008613 vs. NCBI nr
Match: KAA0064244.1 (uncharacterized protein E6C27_scaffold548G001980 [Cucumis melo var. makuwa] >TYK18614.1 uncharacterized protein E5676_scaffold119G001460 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-10
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 37 KKKVKTRTNKSENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKLETKQK 94
          ++  +TRTNKSENYQIARFVDGLK++I E+LDLQP+ + PAAI M +KA++KLE +QK
Sbjct: 18 RRSARTRTNKSENYQIARFVDGLKEDIHEQLDLQPMATLPAAILMGFKAEMKLEKRQK 75

[Close]

BLAST of PI0008613 vs. NCBI nr
Match: XP_028556538.1 (uncharacterized protein LOC110116452 [Dendrobium catenatum])

HSP 1 Score: 71.6 bits (174), Expect = 8.7e-09
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   MKVDLPTFGGKLDVEAFLDWVKNVESFFEYMETPNDKK----------------KVKTRT 60
           +K+D+P F G+L +E +LDW ++VE+FF+YME   +K+                 V+   
Sbjct: 108 VKLDIPFFNGRLHIEDYLDWERSVENFFDYMEIETEKQVKYVACRLKGGEFYCLSVRNDL 167

Query: 61  NKSENYQIARFVDGLKDEIQEKLDLQPIVS-PAAISMAYKAKVKL 89
           N++ N  +AR + GLKD IQ+KL+L  + S   A++ A KA+++L
Sbjct: 168 NETTNQLVARNIGGLKDSIQDKLELNSVWSLSQAVNFALKAEIQL 212

The following BLAST results are available for this feature:

BLAST of PI0008613 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYP4	3.9e-31	60.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CPR5	3.7e-21	48.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UUZ0	2.6e-19	46.71	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3D505	1.3e-10	65.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CH16	1.8e-07	65.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33...	[more]

BLAST of PI0008613 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16074.1	8.1e-31	60.29	hypothetical protein E5676_scaffold32G00940 [Cucumis melo var. makuwa]	[more]
TYK13853.1	7.6e-21	48.59	uncharacterized protein E5676_scaffold832G00370 [Cucumis melo var. makuwa]	[more]
KAA0057976.1	5.4e-19	46.71	uncharacterized protein E6C27_scaffold274G002800 [Cucumis melo var. makuwa]	[more]
KAA0064244.1	2.7e-10	65.52	uncharacterized protein E6C27_scaffold548G001980 [Cucumis melo var. makuwa] >TYK...	[more]
XP_028556538.1	8.7e-09	36.19	uncharacterized protein LOC110116452 [Dendrobium catenatum]	[more]

BLAST of PI0008613 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008613.1	PI0008613.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity