PI0008556 (gene) Melon (PI 482460) v1

Overview


Name	PI0008556
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr07: 5656893 .. 5657250 (+)
RNA-Seq Expression	PI0008556
Synteny	PI0008556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGATTACGATGAATGTCATAAAGGGCTTAAAGATTGTAATCATAATTGATGAAAAAGCCTAATCGATTGAATGATGATGCAGAATGGAAAAATTGAAGAAACAACAAATGGGTTTCGGATTCCGATTAGATAAATGGTTGAAGGGAAAAATTGGAGGTGGTGATTATAGAAATCCTGATTTGAATCGGACAGAACTGAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGGGATTTTTTTTTAACTTTCGGAAGGCCTGA

mRNA sequence

ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGATTACGATGAATGTCATAAAGGGCTTAAAGATTATAAATGGTTGAAGGGAAAAATTGGAGGTGGTGATTATAGAAATCCTGATTTGAATCGGACAGAACTGAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGGGATTTTTTTTTAACTTTCGGAAGGCCTGA

Coding sequence (CDS)

ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGATTACGATGAATGTCATAAAGGGCTTAAAGATTATAAATGGTTGAAGGGAAAAATTGGAGGTGGTGATTATAGAAATCCTGATTTGAATCGGACAGAACTGAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGGGATTTTTTTTTAACTTTCGGAAGGCCTGA

Protein sequence

MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGDYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKGFFFNFRKA

Homology

[Close]

BLAST of PI0008556 vs. ExPASy TrEMBL
Match: A0A0A0KX61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGDYRNPDLNRTELKGNMT 60
          MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGG YRNPDLNRTELKGNMT
Sbjct: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60

Query: 61 EKSSSRPDCSNPRRKEEK 79
          EKSSSRPDCSNPRRKEEK
Sbjct: 61 EKSSSRPDCSNPRRKEEK 78

[Close]

BLAST of PI0008556 vs. NCBI nr
Match: KGN53439.1 (hypothetical protein Csa_014595 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGDYRNPDLNRTELKGNMT 60
          MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGG YRNPDLNRTELKGNMT
Sbjct: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60

Query: 61 EKSSSRPDCSNPRRKEEK 79
          EKSSSRPDCSNPRRKEEK
Sbjct: 61 EKSSSRPDCSNPRRKEEK 78

The following BLAST results are available for this feature:

BLAST of PI0008556 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX61	1.6e-37	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1	[more]

BLAST of PI0008556 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53439.1	3.2e-37	98.72	hypothetical protein Csa_014595 [Cucumis sativus]	[more]

BLAST of PI0008556 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008556.1	PI0008556.1	mRNA