PI0008554 (gene) Melon (PI 482460) v1

Overview


Name	PI0008554
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	zf-RVT domain-containing protein
Location	chr08: 22682902 .. 22684202 (-)
RNA-Seq Expression	PI0008554
Synteny	PI0008554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTATAGGTTGTGGTACTCTGAGGTGAAAATTCTAAAGCTAGATCTTAGAGTTGTTTATGAGTACACTACTTTTCCGTATTCTAATCTAAAACTTCTAGGCACCGTTTTACAAACCTTTGGTTTTTGGTTTTGATTTTTAAAAATTGTTATGCTTTCTCACAATTTCTTTACAATGGTTCATTTTCTCTAAGGTAACACTTGAATTCTTAGGCCACGTAGTAATGAGAATTAAGGTCCTTGAGAATCACCCATTTCGTTTTGGGAGGACAGATGTGAGAGTCTAGAGCCCCAGTCCTTTGGATGGGTTCTTGTGTAAGTCTTTTTTTCAGTGCTTGGTTAATCCTTCACCTCTGGTTGAGTTGATCTTTCCATCAATTTGGAGGATTAAGGTCCCTAGAAAGGTTCGTTTCTTTACCTGACGTGTCCTTCATGGCCGTATCAGCACGTTGGATAGGTTTTCGAGGAAGATGTTGTCGTTGGTTGGACCTTTTTGCTGTATTCTGTGTTGGAAGGTGGAGGAAGACTTTAGACCATGTCTTTTGGCATTGTGAGATGGTGAGCCGTGTTTGGGATGCCTTTTTCCAGACTTTTGGCTTAAGCAGTGTTTGTCACATAATTGTTAAAGATATGATCAAGGAGTTCCTCCTCAATCCTCCATTTGGGAAGAAAGACCGATTTCTCTGGTGTGCTAGTGTCTGTGCTACTTTGTGGGTGTTATGGGACGAGAGGAATGGTAGGGTGTTTAGTGGGGTTGAGAAGGGCAATGGAGGCTTATGGTCTCTTGTTCGTTTTCATATTTCTCATTGAGCTTTGATTTCAAAGACTTTTTGTAATTATCCTATGAACATGATTTTGTGTAGTTGGAGTCACTTCTTGTAGAGGGATTCCTCTTTTTTGAGGGCTTGGTTCTATCCCGTGCATTCATTCATTTTTTCTCAATGAAAGTTGTGGTTTTTATAGAATAAAAAGGCTAATTTTCAAAACCAAAAATCCAAAAGCTCAATGGTTATCAATTGGAGCTTGAACTTTTCAATTAGATATTTGCTCTATTTCGATTTTAACCGTGAATGTGGCAAACCTCTTGTTATTATTGGAAAGTAGGAATTTAATAATCGTGCTCAAGTTGGATTAATACAGTAAGGCTTGTTGGATTTATAAAAAATTGTGTATTTTTTTTATTGTGGGTTCAATATTTTTATTTAATATTAAATACACTTAGACTTCCTTCGATGCCCAACTTTAACTTTCTTGCTGGGTATGAATGTTTCCAGGAGGCCTGTCTGCTCCACACTACCGGTAA

mRNA sequence

ACTATAGGTTGTGGTACTCTGAGGTGAAAATTCTAAAGCTAGATCTTAGAGTTGTTTATGAGTACACTACTTTTCCGTATTCTAATCTAAAACTTCTAGGCACCGTTTTACAAACCTTTGGTTTTTGGTTTTGATTTTTAAAAATTGTTATGCTTTCTCACAATTTCTTTACAATGGTTCATTTTCTCTAAGGTAACACTTGAATTCTTAGGCCACGTAGTAATGAGAATTAAGGTCCTTGAGAATCACCCATTTCGTTTTGGGAGGACAGATGTGAGAGTCTAGAGCCCCAGTCCTTTGGATGGGTTCTTGTGTAAGTCTTTTTTTCAGTGCTTGGTTAATCCTTCACCTCTGGTTGAGTTGATCTTTCCATCAATTTGGAGGATTAAGGTCCCTAGAAAGGTTCGTTTCTTTACCTGACGTGTCCTTCATGGCCGTATCAGCACGTTGGATAGGTTTTCGAGGAAGATGTTGTCGTTGGTTGGACCTTTTTGCTGTATTCTGTGTTGGAAGGTGGAGGAAGACTTTAGACCATGTCTTTTGGCATTGTGAGATGGTGAGCCGTGTTTGGGATGCCTTTTTCCAGACTTTTGGCTTAAGCAGTGTTTGTCACATAATTGTTAAAGATATGATCAAGGAGTTCCTCCTCAATCCTCCATTTGGGAAGAAAGACCGATTTCTCTGGTGTGCTAGTGTCTGTGCTACTTTGTGGGTGTTATGGGACGAGAGGAATGGAGGCCTGTCTGCTCCACACTACCGGTAA

Coding sequence (CDS)

ATGGCCGTATCAGCACGTTGGATAGGTTTTCGAGGAAGATGTTGTCGTTGGTTGGACCTTTTTGCTGTATTCTGTGTTGGAAGGTGGAGGAAGACTTTAGACCATGTCTTTTGGCATTGTGAGATGGTGAGCCGTGTTTGGGATGCCTTTTTCCAGACTTTTGGCTTAAGCAGTGTTTGTCACATAATTGTTAAAGATATGATCAAGGAGTTCCTCCTCAATCCTCCATTTGGGAAGAAAGACCGATTTCTCTGGTGTGCTAGTGTCTGTGCTACTTTGTGGGTGTTATGGGACGAGAGGAATGGAGGCCTGTCTGCTCCACACTACCGGTAA

Protein sequence

MAVSARWIGFRGRCCRWLDLFAVFCVGRWRKTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKDRFLWCASVCATLWVLWDERNGGLSAPHYR

Homology

[Close]

BLAST of PI0008554 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.3e-16
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 33  LDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKDRFLWCASVCAT 92
           LDH+  H  + S +WDAF QTFGL    H  V+ MI+EFLLN P G++ RFLW A VCA 
Sbjct: 56  LDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVCAI 115

Query: 93  LWVLWDERN 102
           LWVLWDE N
Sbjct: 116 LWVLWDETN 124

[Close]

BLAST of PI0008554 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 24  FCVGRWR--KTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKD 83
           F +  W+  + LDH+ WHCE+VS VWD F QTFGLS   H  V+  ++EFLLN P G++ 
Sbjct: 249 FVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNSPCGERG 308

Query: 84  RFLWCASVCATL 94
            FLW A V A L
Sbjct: 309 PFLWHACVHAHL 320

[Close]

BLAST of PI0008554 vs. ExPASy TrEMBL
Match: A0A5A7UZB5 (RNA-binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00980 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 24  FCVGRWRKTLD----------HVFWHCEMVSRVWDAFFQTFG--------LSSVCHIIVK 83
           FC    R+TLD          H F++     RVW +  + F         LS +  + V+
Sbjct: 32  FCGFGVRETLDVAVLISLLESHSFYNGRRDVRVWSSPLEGFSCRVNTLDRLSRILPLDVR 91

Query: 84  DMIKEFLLNPPFGKKDRFLWCASVCATLWVLWDERN 102
            MI++FLLN P GK+ RFLWCA V A LW LWDERN
Sbjct: 92  GMIEDFLLNSPCGKRGRFLWCACVRAILWDLWDERN 127

[Close]

BLAST of PI0008554 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.2e-07
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 7   WIGFRGRCCRWLDL----FAVFCVGRWRKTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHI 66
           WI    R  + + L    F+ F   + ++ LD++FW C+    VW++F Q F    V   
Sbjct: 139 WINTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQR 198

Query: 67  IVKDMIKEFLLNPPFGKKDRFLWCASVCATL 94
            V+  I+EFLL+PPF +K   LW A VCA +
Sbjct: 199 SVRVTIEEFLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of PI0008554 vs. ExPASy TrEMBL
Match: A0A200QJ46 (Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_1117g12 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 31  KTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKDRFLWCASVC 90
           ++++H+  HC + S VW+ FF  FG+    H  V  + +E  LN  F K+   LW     
Sbjct: 209 ESVNHLMIHCPIASEVWNIFFDGFGVRWAMHKDVSQLFQE-RLNKSFSKEGNHLWRLLPY 268

Query: 91  ATLWVLWDERN 102
           A  W LW+ERN
Sbjct: 269 AVTWTLWNERN 278

[Close]

BLAST of PI0008554 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 33  LDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKDRFLWCASVCAT 92
           LDH+  H  + S +WDAF QTFGL    H  V+ MI+EFLLN P G++ RFLW A VCA 
Sbjct: 56  LDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVCAI 115

Query: 93  LWVLWDERN 102
           LWVLWDE N
Sbjct: 116 LWVLWDETN 124

[Close]

BLAST of PI0008554 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 5.0e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 24  FCVGRWR--KTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHIIVKDMIKEFLLNPPFGKKD 83
           F +  W+  + LDH+ WHCE+VS VWD F QTFGLS   H  V+  ++EFLLN P G++ 
Sbjct: 249 FVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNSPCGERG 308

Query: 84  RFLWCASVCATL 94
            FLW A V A L
Sbjct: 309 PFLWHACVHAHL 320

[Close]

BLAST of PI0008554 vs. NCBI nr
Match: XP_031745951.1 (LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 63  IVKDMIKEFLLNPPFGKKDRFLWCASVCATLWVLWDERN 102
           +V+DMIK +LLN  FG+KDRFLWCAS+ A LWVLWDERN
Sbjct: 234 VVRDMIKVYLLNLSFGEKDRFLWCASISAILWVLWDERN 272

[Close]

BLAST of PI0008554 vs. NCBI nr
Match: KAA0058925.1 (RNA-binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-09
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 24  FCVGRWRKTLD----------HVFWHCEMVSRVWDAFFQTFG--------LSSVCHIIVK 83
           FC    R+TLD          H F++     RVW +  + F         LS +  + V+
Sbjct: 32  FCGFGVRETLDVAVLISLLESHSFYNGRRDVRVWSSPLEGFSCRVNTLDRLSRILPLDVR 91

Query: 84  DMIKEFLLNPPFGKKDRFLWCASVCATLWVLWDERN 102
            MI++FLLN P GK+ RFLWCA V A LW LWDERN
Sbjct: 92  GMIEDFLLNSPCGKRGRFLWCACVRAILWDLWDERN 127

[Close]

BLAST of PI0008554 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 7   WIGFRGRCCRWLDL----FAVFCVGRWRKTLDHVFWHCEMVSRVWDAFFQTFGLSSVCHI 66
           WI    R  + + L    F+ F   + ++ LD++FW C+    VW++F Q F    V   
Sbjct: 139 WINTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQR 198

Query: 67  IVKDMIKEFLLNPPFGKKDRFLWCASVCATL 94
            V+  I+EFLL+PPF +K   LW A VCA +
Sbjct: 199 SVRVTIEEFLLHPPFREKWCILWLAGVCAVI 229

The following BLAST results are available for this feature:

BLAST of PI0008554 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXB1	7.3e-16	59.42	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3CI74	2.4e-11	51.39	Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UZB5	2.3e-09	41.67	RNA-binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98...	[more]
A0A5D3CHC7	6.2e-07	36.26	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1	[more]
A0A200QJ46	5.2e-06	36.62	Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_...	[more]

BLAST of PI0008554 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900613.1	1.5e-15	59.42	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
TYK09969.1	5.0e-11	51.39	calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]	[more]
XP_031745951.1	2.7e-09	74.36	LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransfer...	[more]
KAA0058925.1	4.7e-09	41.67	RNA-binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK11201.1	1.3e-06	36.26	SIL1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0008554 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008554.1	PI0008554.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0002128	tRNA nucleoside ribose methylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008175	tRNA methyltransferase activity