Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAACGTTTCAAGCTATCGTAGAAATGTGCGAGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGAAATGAAGTACATCATTTTTTAGGAGTTGTTTGAAAATTGGGTGAAGGTCAGTTATTCATTCTGTCAACCGTTATTCGTTTATAGAAAAAAACTGACAATTTATTTAAACACTTCAATAAAGTCATCTTACTGCCAAAGGCTTCCTAAACAAGCCATTTTCTCATTACGACGACTTGTGCTACGTATTTGGGAAAAATCGTGTGACAGGAGCGCGAGCGGAGATATTCGCCGATTTAGGGTTGAATGTGCCTTGAGGGTACGAGGGATTTCCCGCTGACGATGGTCACGATATAGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCGCCTGACAACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGTAAGACTGGTTCAAGCGAATCGAAAAGGAAACGAGGAGGCCAAACGGTAGAGAATGTGGAAATCATTCGCAATGCAATGGACTTCACGAATGACCAGTTGAAAACCATTGTAGAGTTGTCAAATTTACAATGTCAAGATGATAGCGCCTCTCTTGAAGAAGTCGTTAACCAGTTGTAGGGGATCCCTGAACTGAGTACCCGTGATAGGGTGCGCCTTATGCGAATACTGATGCGCAATGTGAACGACATGAAAGGATTCTTGGAGGTACCCGATGAGCTTAAGTTAGACTACTGCACGGTCATTCTTAAAGAGAACGCTTGA
mRNA sequence
ATGAAGAAAACGTTTCAAGCTATCGTAGAAATGTGCGAGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGAAATGAAAAAAAAACTGACAATTTATTTAAACACTTCAATAAAGTCATCTTACTGCCAAAGGCTTCCTAAACAAGCCATTTTCTCATTACGACGACTTGTGCTACGTATTTGGGAAAAATCGTGTGACAGGAGCGCGAGCGGAGATATTCGCCGATTTAGGGTTGAATGTGCCTTGAGGGGATTTCCCGCTGACGATGGTCACGATATAGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCGCCTGACAACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGGGATCCCTGAACTGAGTACCCGTGATAGGGTGCGCCTTATGCGAATACTGATGCGCAATGTGAACGACATGAAAGGATTCTTGGAGGTACCCGATGAGCTTAAGTTAGACTACTGCACGGTCATTCTTAAAGAGAACGCTTGA
Coding sequence (CDS)
ATGAAGAAAACGTTTCAAGCTATCGTAGAAATGTGCGAGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGAAATGAAAAAAAAACTGACAATTTATTTAAACACTTCAATAAAGTCATCTTACTGCCAAAGGCTTCCTAAACAAGCCATTTTCTCATTACGACGACTTGTGCTACGTATTTGGGAAAAATCGTGTGACAGGAGCGCGAGCGGAGATATTCGCCGATTTAGGGTTGAATGTGCCTTGAGGGGATTTCCCGCTGACGATGGTCACGATATAGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCGCCTGACAACATCATGGGCACACGACCCAGTCGCTTGAGTGAGGGGATCCCTGAACTGAGTACCCGTGATAGGGTGCGCCTTATGCGAATACTGATGCGCAATGTGAACGACATGAAAGGATTCTTGGAGGTACCCGATGAGCTTAAGTTAGACTACTGCACGGTCATTCTTAAAGAGAACGCTTGA
Protein sequence
MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIMGTRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKENA
Homology
BLAST of PI0008544 vs. ExPASy TrEMBL
Match:
A0A5D3CV43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00470 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 72/174 (41.38%), Postives = 100/174 (57.47%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFS 60
MK+ F+A+ EM +CSGFGWNDE K+ + + + K + P + +
Sbjct: 68 MKRMFRALAEMHGSTCSGFGWNDEKKCIVVEKEVFDDWSHPAAKGLLNKSFPHYNELSYG 127
Query: 61 LRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIMG 120
L ++V R DR S R F D D + P+MYSQGL+MS D++M
Sbjct: 128 LTKIVQRE-----DRVESFADVRSNDPAGYDAFVVDAMPDTDFPLMYSQGLNMSSDDLME 187
Query: 121 TRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN 167
TR ++L E + EL+ DR RLMRILMRNV+DMK FL+VPD +K YC++IL+EN
Sbjct: 188 TRTAQL-EALLELTLMDRCRLMRILMRNVDDMKAFLDVPDNMKYPYCSIILQEN 235
BLAST of PI0008544 vs. ExPASy TrEMBL
Match:
A0A5A7TFM7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00060 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 71/174 (40.80%), Postives = 100/174 (57.47%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFS 60
MK+ F+A+ EM +CSGFGWNDE K+ + + + K + P + +
Sbjct: 68 MKRMFRALAEMHGSTCSGFGWNDEKKCIVVEKEVFDDWSHPAAKGLLNKSFPHYNELSYG 127
Query: 61 LRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIMG 120
L ++V R DR+ S R F D D + P+MYSQGL+MS D++M
Sbjct: 128 LTKIVQRE-----DRAESFADVRSNDPAGYDAFVVDAMPDTDFPLMYSQGLNMSSDDLME 187
Query: 121 TRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN 167
TR ++L E + EL+ DR RLMRILMRNV+DMK FL+VPD +K Y ++IL+EN
Sbjct: 188 TRTAQL-EALLELTLMDRCRLMRILMRNVDDMKAFLDVPDNMKYPYWSIILQEN 235
BLAST of PI0008544 vs. ExPASy TrEMBL
Match:
A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 77/189 (40.74%), Postives = 95/189 (50.26%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRI 60
+K+ F AI EM P+CSGFGWNDE K I + + + + P A L +
Sbjct: 73 LKRMFHAIAEMRGPTCSGFGWNDEQK---CIVVEKEVFDDWVKSHP-TAKGLLNKSFPHY 132
Query: 61 WEKSC----DRSASGDIRRF-----RVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIM 120
E S DR+ G + F F AD D MYSQGL MS D +M
Sbjct: 133 DELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELM 192
Query: 121 GTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLD 167
GTR + +SE IPEL+ DR LMRILMRNV+DMK FLEVPD +K
Sbjct: 193 GTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYP 252
BLAST of PI0008544 vs. ExPASy TrEMBL
Match:
A0A5A7VJD7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00750 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 71/231 (30.74%), Postives = 103/231 (44.59%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLV 60
+K+ F A+ +MC+P+CS FGWNDE K +T ++++ +S + L ++ L
Sbjct: 84 LKRMFHALAKMCDPTCSSFGWNDEQKCLVTEKEVFIDWVNSNSAAKDLLNKSFPHYDELS 143
Query: 61 LRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEIPMMYSQGLDMSPDNIMGTRP 120
+ R + R+ F AD D + MY+QGL+MSPD +MGTR
Sbjct: 144 YVFGKDRATRGQAETFMDVRLNDPAKYEAFVADAALDTDFQPMYNQGLNMSPDELMGTRT 203
Query: 121 SRLSEG------------------------------------------------------ 167
+R+SEG
Sbjct: 204 TRVSEGRFVSNRSERKRGPQAANSEEVIRTAIEYENEQLNRIAESPVLQRQDASQTRQEV 263
BLAST of PI0008544 vs. ExPASy TrEMBL
Match:
A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 79/208 (37.98%), Postives = 100/208 (48.08%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLR 60
+K+ F AI EM P+CSGFGWNDE K I + ++ + L + + L +L L
Sbjct: 73 LKRMFHAIAEMRGPTCSGFGWNDEQK---CIVAEKEVFDNWVKSHLAAKGL--LTKLFLH 132
Query: 61 IWEKSC----DRSASGDIRRF-----RVECALRGFPADDGHDIEIPMMYSQGLDMSPDNI 120
E S DR+ G F F A+ D MYSQ L+MSPD +
Sbjct: 133 YDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQELNMSPDEL 192
Query: 121 MGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILM 167
MGTR +R+SEG IPEL+ DR LM ILM
Sbjct: 193 MGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDRCPLMPILM 252
BLAST of PI0008544 vs. NCBI nr
Match:
TYK14256.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.4 bits (298), Expect = 3.0e-23
Identity = 72/174 (41.38%), Postives = 100/174 (57.47%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFS 60
MK+ F+A+ EM +CSGFGWNDE K+ + + + K + P + +
Sbjct: 68 MKRMFRALAEMHGSTCSGFGWNDEKKCIVVEKEVFDDWSHPAAKGLLNKSFPHYNELSYG 127
Query: 61 LRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIMG 120
L ++V R DR S R F D D + P+MYSQGL+MS D++M
Sbjct: 128 LTKIVQRE-----DRVESFADVRSNDPAGYDAFVVDAMPDTDFPLMYSQGLNMSSDDLME 187
Query: 121 TRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN 167
TR ++L E + EL+ DR RLMRILMRNV+DMK FL+VPD +K YC++IL+EN
Sbjct: 188 TRTAQL-EALLELTLMDRCRLMRILMRNVDDMKAFLDVPDNMKYPYCSIILQEN 235
BLAST of PI0008544 vs. NCBI nr
Match:
KAA0042232.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 116.3 bits (290), Expect = 2.5e-22
Identity = 71/174 (40.80%), Postives = 100/174 (57.47%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEM------KKKLTIYLNTSIKSSYCQRLP--KQAIFS 60
MK+ F+A+ EM +CSGFGWNDE K+ + + + K + P + +
Sbjct: 68 MKRMFRALAEMHGSTCSGFGWNDEKKCIVVEKEVFDDWSHPAAKGLLNKSFPHYNELSYG 127
Query: 61 LRRLVLRIWEKSCDRSASGDIRRFRVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIMG 120
L ++V R DR+ S R F D D + P+MYSQGL+MS D++M
Sbjct: 128 LTKIVQRE-----DRAESFADVRSNDPAGYDAFVVDAMPDTDFPLMYSQGLNMSSDDLME 187
Query: 121 TRPSRLSEGIPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLDYCTVILKEN 167
TR ++L E + EL+ DR RLMRILMRNV+DMK FL+VPD +K Y ++IL+EN
Sbjct: 188 TRTAQL-EALLELTLMDRCRLMRILMRNVDDMKAFLDVPDNMKYPYWSIILQEN 235
BLAST of PI0008544 vs. NCBI nr
Match:
TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 114.8 bits (286), Expect = 7.3e-22
Identity = 77/189 (40.74%), Postives = 95/189 (50.26%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQRLPKQAIFSLRRLVLRI 60
+K+ F AI EM P+CSGFGWNDE K I + + + + P A L +
Sbjct: 73 LKRMFHAIAEMRGPTCSGFGWNDEQK---CIVVEKEVFDDWVKSHP-TAKGLLNKSFPHY 132
Query: 61 WEKSC----DRSASGDIRRF-----RVECALRGFPADDGHDIEIPMMYSQGLDMSPDNIM 120
E S DR+ G + F F AD D MYSQGL MS D +M
Sbjct: 133 DELSYMFGKDRAMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELM 192
Query: 121 GTRPSRLSEG--------------IPELSTRDRVRLMRILMRNVNDMKGFLEVPDELKLD 167
GTR + +SE IPEL+ DR LMRILMRNV+DMK FLEVPD +K
Sbjct: 193 GTRTALVSEDASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYP 252
BLAST of PI0008544 vs. NCBI nr
Match:
KAA0067287.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10900.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112.5 bits (280), Expect = 3.6e-21
Identity = 71/231 (30.74%), Postives = 103/231 (44.59%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLT---IYLNTSIKSSYCQRLPKQAIFSLRRLV 60
+K+ F A+ +MC+P+CS FGWNDE K +T ++++ +S + L ++ L
Sbjct: 84 LKRMFHALAKMCDPTCSSFGWNDEQKCLVTEKEVFIDWVNSNSAAKDLLNKSFPHYDELS 143
Query: 61 LRIWEKSCDRSASGDIRRFRVE--CALRGFPADDGHDIEIPMMYSQGLDMSPDNIMGTRP 120
+ R + R+ F AD D + MY+QGL+MSPD +MGTR
Sbjct: 144 YVFGKDRATRGQAETFMDVRLNDPAKYEAFVADAALDTDFQPMYNQGLNMSPDELMGTRT 203
Query: 121 SRLSEG------------------------------------------------------ 167
+R+SEG
Sbjct: 204 TRVSEGRFVSNRSERKRGPQAANSEEVIRTAIEYENEQLNRIAESPVLQRQDASQTRQEV 263
BLAST of PI0008544 vs. NCBI nr
Match:
KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.9 bits (276), Expect = 1.1e-20
Identity = 79/208 (37.98%), Postives = 100/208 (48.08%), Query Frame = 0
Query: 1 MKKTFQAIVEMCEPSCSGFGWNDEMKKKLTIYLNTSIKSSYCQ-RLPKQAIFSLRRLVLR 60
+K+ F AI EM P+CSGFGWNDE K I + ++ + L + + L +L L
Sbjct: 73 LKRMFHAIAEMRGPTCSGFGWNDEQK---CIVAEKEVFDNWVKSHLAAKGL--LTKLFLH 132
Query: 61 IWEKSC----DRSASGDIRRF-----RVECALRGFPADDGHDIEIPMMYSQGLDMSPDNI 120
E S DR+ G F F A+ D MYSQ L+MSPD +
Sbjct: 133 YDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQELNMSPDEL 192
Query: 121 MGTRPSRLSEG--------------------------------IPELSTRDRVRLMRILM 167
MGTR +R+SEG IPEL+ DR LM ILM
Sbjct: 193 MGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDRCPLMPILM 252
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CV43 | 1.4e-23 | 41.38 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TFM7 | 1.2e-22 | 40.80 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3C1J4 | 3.5e-22 | 40.74 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7VJD7 | 1.8e-21 | 30.74 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UIE9 | 5.1e-21 | 37.98 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK14256.1 | 3.0e-23 | 41.38 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0042232.1 | 2.5e-22 | 40.80 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK05687.1 | 7.3e-22 | 40.74 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0067287.1 | 3.6e-21 | 30.74 | retrotransposon protein [Cucumis melo var. makuwa] >TYK10900.1 retrotransposon p... | [more] |
| KAA0054347.1 | 1.1e-20 | 37.98 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
