PI0008538 (gene) Melon (PI 482460) v1

Overview


Name	PI0008538
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr11: 15629467 .. 15631112 (+)
RNA-Seq Expression	PI0008538
Synteny	PI0008538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCTAGGATGGCTGAGAATTCACAGTATTTTGGCAACAGGGCATCCGAGCTCGATAATTCATTGACAAAAGAGGTAAGTGAACTGAAATCACAGATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGTGGATCTGTAAAAGTTGCAAAATGTGGAGTTTGCGGTTAATAGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCTTCTTCAAACAATCAAGGTACTAATTTGGAACACTTAGTAAAAGCTCTTGCAACTAATACAATTTCTTTTCAGAATGAAATGAAATAGCAAATATCTCAACTAACAACTGTAATAAGCAAACTAGAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGTGAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCTAACGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCACCATCTTCATCAAAAGGTAAAAATCATGTTAATGATTATTCTCCTTATATCCCTAATGCTCCTTTTCCTTCCAGATTAGCCCCTAAAAAGAAAGAATCGCCGAAGGAAGAAAAACTTTTGGAGATTTTTAGAAAAGTGCAAATAAACCTGCCTCTGCTTGACGTGATTCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAAGAATTATGCAAAAACAAGAGAAAAATCAAAGAACAACTGATGGTAAGCCATAACGTTTCTGCTCTTCTTAAAACTTCAATACCTGCAAAACAAAACGATCCAGGTATGTTTTCTCTTCCTTGTGTTATAGGAAATAGACCGATTTCAAATGCCATGCTAGATTTAGGAGCCTCTATCAATGTCATGCCTTACTCTGTTTTTAAAGATCTTGAATTAAATAATCTGCAAAAAACAAATGTATACATTCAACTTACTGATAGATCTTTCATATCTCCGTTAGGAATAGTTGAAGATGTGCTAGTCAAAGTAGATAAGCTAATATTTCCTGCGGATTTTTATATTCTAGAAATGAATGATGAATGTGTAAAACCTTCCCATTCAATTCTCCTAAGAAGACCTTTCCTTAAGACTGCTAAAGCTATCATAGATGTAGACAAGGGTTGCCTTAGAGTAGAATTCGATGGAGACATCGTGACATTTAATATTTTTGAATCCATGAAATTTCCTGAAGAATGTCTTTCCATATGCTCCTTACAATTGCATGATGAATTTGAACAATTTCCTATGAACAATCAATTTGCTAAACAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGAGTGAATTAAATGAAGAAAAAGAAATTGTAGGCGAATTAGAAAGCGCAGTTCGCTCCCTTGGGTACGACAACTCTGTTCTTCAACTATACTCACCACTACGTCTACATCGCTACAGTTAA

mRNA sequence

ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCTAGGATGGCTGAGAATTCACAGTATTTTGGCAACAGGGCATCCGAGCTCGATAATTCATTGACAAAAGAGGTAAGTGAACTGAAATCACAGATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCTTCTTCAAACAATCAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGTGAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCTAACGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCACCATCTTCATCAAAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGAGTGAATTAAATGAAGAAAAAGAAATTGTAGGCGAATTAGAAAGCGCAGTTCGCTCCCTTGGGTACGACAACTCTGTTCTTCAACTATACTCACCACTACGTCTACATCGCTACAGTTAA

Coding sequence (CDS)

ATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCTAGGATGGCTGAGAATTCACAGTATTTTGGCAACAGGGCATCCGAGCTCGATAATTCATTGACAAAAGAGGTAAGTGAACTGAAATCACAGATGCTTAATATGACTACCTTATTAACCTCTTTTGTGCAAGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCATGGAAACACTTACAACGCCGGTTGGAGAGACAATCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGCAACTTCTTCTTCAAACAATCAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGTGAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCTAACGAAGAAAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCACCATCTTCATCAAAAGAGTTAGATGAAATAGAAGAAGATATTTGTTTGAGTGAATTAAATGAAGAAAAAGAAATTGTAGGCGAATTAGAAAGCGCAGTTCGCTCCCTTGGGTACGACAACTCTGTTCTTCAACTATACTCACCACTACGTCTACATCGCTACAGTTAA

Protein sequence

MDRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGKGKLPAQPDHVNVSAISLRSGKTLETPSNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKELDEIEEDICLSELNEEKEIVGELESAVRSLGYDNSVLQLYSPLRLHRYS

Homology

[Close]

BLAST of PI0008538 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.4e-63
Identity = 145/240 (60.42%), Postives = 164/240 (68.33%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVDAAAGG LA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNM
Sbjct: 237 DRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNM 296

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               GHPNDKCP+++EE N+++KYDP+ NTYN GWRDNP 
Sbjct: 297 TTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPI 356

Query: 122 LRWGNDNQRPAQATSSSNNQ-------------------------------------GKG 181
           LRWGNDNQ+  QA ++S+NQ                                     GKG
Sbjct: 357 LRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKG 416

Query: 182 KLPAQPDHVNVSAISLRSGKTLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           KLPAQP+H NVS ISLRSGK L+TPS  E+KVTSIP  L  KNE KEEKVET+   S+ K
Sbjct: 417 KLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPK 476

[Close]

BLAST of PI0008538 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.0e-62
Identity = 146/239 (61.09%), Postives = 162/239 (67.78%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRN VDAAA G LADKTP EARELI RMAENSQ FGNRASELDNSLTKEVSELKSQMLNM
Sbjct: 106 DRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 165

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPN
Sbjct: 166 TTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPN 225

Query: 122 LRWGNDNQRPAQATSSSNNQ------------------------------------GKGK 181
           LRWGNDNQ+  QA  +S+NQ                                    GKGK
Sbjct: 226 LRWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGK 285

Query: 182 LPAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           LPAQPDHVNVSAISLRSGK L+TP + E+KVTS    L  KN+ KEEKVET+   S+SK
Sbjct: 286 LPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNPLSSNSK 344

[Close]

BLAST of PI0008538 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.0e-62
Identity = 143/240 (59.58%), Postives = 163/240 (67.92%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVDA AGG LADK PTEARELIS+MAENSQ F NRASELDNSLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPN
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWGNDNQRPAQATSSSNNQ-------------------------------------GKG 181
           LRWGNDNQ+  QA S+S+NQ                                     GKG
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLPAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           KL AQ ++ NVSA+SLRSGK L+TP + E+K TS P  L  KNE KEEK+ET+  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

[Close]

BLAST of PI0008538 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.2e-62
Identity = 141/231 (61.04%), Postives = 159/231 (68.83%), Query Frame = 0


Query: 3   RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMT 62
           RNT+D AAGG LADKTPTEARELISRMAENS+ FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNL 122
           TLLTSFVQ               GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWGNDNQRPAQATSSSNNQ-------------------------------------GKGK 181
           RWGNDNQ+  QA S+S+NQ                                     GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

[Close]

BLAST of PI0008538 vs. ExPASy TrEMBL
Match: A0A5D3CQR9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00090 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.1e-61
Identity = 143/238 (60.08%), Postives = 159/238 (66.81%), Query Frame = 0


Query: 4   NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTT 63
           NTVDAAAGG LADKTPT ARELISRMAENSQ FGN+ASELDNSL KEVSELKSQMLNMTT
Sbjct: 15  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 74

Query: 64  LLTSFV---------------QGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLR 123
           LLTSFV                GH NDKCP+++E+ N++R+YDPHGNTYN+GWRDNPNLR
Sbjct: 75  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 134

Query: 124 WGNDNQRPAQATSSSNNQ-------------------------------------GKGKL 183
           WGNDNQ+   A S+S+ Q                                     GKGKL
Sbjct: 135 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 194

Query: 184 PAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
            AQP H NVS ISLRSGK L+TP S E+KVTS P  L  KNE KEEKVET+  PS+SK
Sbjct: 195 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 252

[Close]

BLAST of PI0008538 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 7.1e-63
Identity = 145/240 (60.42%), Postives = 164/240 (68.33%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVDAAAGG LA+K PTEARELISRMA+NSQ FGNRASEL+NSLTKEVSELKSQMLNM
Sbjct: 237 DRNTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNM 296

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               GHPNDKCP+++EE N+++KYDP+ NTYN GWRDNP 
Sbjct: 297 TTLLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPI 356

Query: 122 LRWGNDNQRPAQATSSSNNQ-------------------------------------GKG 181
           LRWGNDNQ+  QA ++S+NQ                                     GKG
Sbjct: 357 LRWGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKG 416

Query: 182 KLPAQPDHVNVSAISLRSGKTLETPS-NEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           KLPAQP+H NVS ISLRSGK L+TPS  E+KVTSIP  L  KNE KEEKVET+   S+ K
Sbjct: 417 KLPAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPK 476

[Close]

BLAST of PI0008538 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-62
Identity = 143/240 (59.58%), Postives = 163/240 (67.92%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRNTVDA AGG LADK PTEARELIS+MAENSQ F NRASELDNSLTKEVSELKSQMLNM
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEVSELKSQMLNM 142

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPN
Sbjct: 143 TTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPN 202

Query: 122 LRWGNDNQRPAQATSSSNNQ-------------------------------------GKG 181
           LRWGNDNQ+  QA S+S+NQ                                     GKG
Sbjct: 203 LRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

Query: 182 KLPAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           KL AQ ++ NVSA+SLRSGK L+TP + E+K TS P  L  KNE KEEK+ET+  P +SK
Sbjct: 263 KLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEEKIETNPSPYNSK 322

[Close]

BLAST of PI0008538 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-62
Identity = 146/239 (61.09%), Postives = 162/239 (67.78%), Query Frame = 0


Query: 2   DRNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNM 61
           DRN VDAAA G LADKTP EARELI RMAENSQ FGNRASELDNSLTKEVSELKSQMLNM
Sbjct: 106 DRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSELKSQMLNM 165

Query: 62  TTLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPN 121
           TTLLTSFVQ               G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPN
Sbjct: 166 TTLLTSFVQGTPLKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNPN 225

Query: 122 LRWGNDNQRPAQATSSSNNQ------------------------------------GKGK 181
           LRWGNDNQ+  QA  +S+NQ                                    GKGK
Sbjct: 226 LRWGNDNQKHTQAPPTSSNQGTNLEDIIALATNTLSFQQEMKQQMTQLTTVLSKMDGKGK 285

Query: 182 LPAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
           LPAQPDHVNVSAISLRSGK L+TP + E+KVTS    L  KN+ KEEKVET+   S+SK
Sbjct: 286 LPAQPDHVNVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNQSKEEKVETNPLSSNSK 344

[Close]

BLAST of PI0008538 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 4.6e-62
Identity = 141/231 (61.04%), Postives = 159/231 (68.83%), Query Frame = 0


Query: 3   RNTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMT 62
           RNT+D AAGG LADKTPTEARELISRMAENS+ FGNRASELDNSLTKEVSELKSQMLNMT
Sbjct: 48  RNTLDVAAGGALADKTPTEARELISRMAENSESFGNRASELDNSLTKEVSELKSQMLNMT 107

Query: 63  TLLTSFVQ---------------GHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNL 122
           TLLTSFVQ               GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NL
Sbjct: 108 TLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNL 167

Query: 123 RWGNDNQRPAQATSSSNNQ-------------------------------------GKGK 181
           RWGNDNQ+  QA S+S+NQ                                     GKGK
Sbjct: 168 RWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGKGK 227

[Close]

BLAST of PI0008538 vs. NCBI nr
Match: TYK14267.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.5 bits (628), Expect = 2.3e-61
Identity = 143/238 (60.08%), Postives = 159/238 (66.81%), Query Frame = 0


Query: 4   NTVDAAAGGTLADKTPTEARELISRMAENSQYFGNRASELDNSLTKEVSELKSQMLNMTT 63
           NTVDAAAGG LADKTPT ARELISRMAENSQ FGN+ASELDNSL KEVSELKSQMLNMTT
Sbjct: 15  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKEVSELKSQMLNMTT 74

Query: 64  LLTSFV---------------QGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLR 123
           LLTSFV                GH NDKCP+++E+ N++R+YDPHGNTYN+GWRDNPNLR
Sbjct: 75  LLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWRDNPNLR 134

Query: 124 WGNDNQRPAQATSSSNNQ-------------------------------------GKGKL 183
           WGNDNQ+   A S+S+ Q                                     GKGKL
Sbjct: 135 WGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKMDGKGKL 194

Query: 184 PAQPDHVNVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK 189
            AQP H NVS ISLRSGK L+TP S E+KVTS P  L  KNE KEEKVET+  PS+SK
Sbjct: 195 SAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSK 252

The following BLAST results are available for this feature:

BLAST of PI0008538 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRF5	3.4e-63	60.42	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SQH8	1.0e-62	61.09	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CRR8	1.0e-62	59.58	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CB46	2.2e-62	61.04	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CQR9	1.1e-61	60.08	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0008538 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031967.1	7.1e-63	60.42	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]
KAA0047407.1	2.1e-62	59.58	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0032798.1	2.1e-62	61.09	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]
TYK07549.1	4.6e-62	61.04	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK14267.1	2.3e-61	60.08	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008538 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008538.1	PI0008538.1	mRNA