PI0008532 (gene) Melon (PI 482460) v1

Overview


Name	PI0008532
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr09: 12813127 .. 12813975 (+)
RNA-Seq Expression	PI0008532
Synteny	PI0008532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTGAGGTTCCTAAGGTAGCTTCCTGTGGAGTATGTGACATGATTGGCCACCACAACGATCAATGTTCTGACTTGAAAGAGCTAAGTACGATAGGCAACTTTAGGAGGAATGACCCACAAAGCAACACGTATATCCCTCGATGGAGGTATCATCCCAATCTTAGATTGGGTCCACAAGGCCAAAAGTCGTCTAACACTTCTCCCTCTTCTTCCTTATCGCAAAGGCAAGGTACCTATCTTCAAGAAATCATTTCTAAATTAGCCTTTAGTTCAAATAGCTTCAAAATCGATTTTGAAAAGAATCTAGTTTGGATTACTGAACAAACTGGTAATGCCTTGCCAGACGCCACTCACAGACGAAGCCGAGCCGAGGAGCTGCGCGAGCCAGCCGTCTGTGCTGTTCTTCTTTGCGAGCCATCCCGAGCCCGTGCGAAGCCACACCGATCCGTCTCCTCCACGCGAAGCCGCGCCGCACCGATCTACCTTCTTTCATGCGAGACGATGCCGCACCGATCCGTCTCGCCCACGCGAAGCCGCGTCGCCGTCTGCCTCTCTCTTGCGAAGCCGAGTCGCACCGCGCCGATCTGCCATCATTCACACGAAGCAAACAGTGCCGATCTACCTTCCTTCACGCGAGACGACGCCGTGCCGATCCGTCTCCCCCACGTAAAGTCGCGCCGCCGTCTGCCTCCCTCTTGCGAAGCCGACCCGCACCGCGCTGATCTGCCATCATTCACGGGAAGCAAGCCGTGCTGCCTGCCGTCCAAGCCGAGCCGCCGCACACTGCCTTTTTGTCAGTATGACCCAGTAGAGCTTTCGGGGCTGTTTGTGGTAAGTGTGTAA

mRNA sequence

ATGAAGGGTGAGGTTCCTAAGGTAGCTTCCTGTGGAGTATGTGACATGATTGGCCACCACAACGATCAATGTTCTGACTTGAAAGAGCTAAGTACGATAGGCAACTTTAGGAGGAATGACCCACAAAGCAACACGTATATCCCTCGATGGAGGTATCATCCCAATCTTAGATTGGGTCCACAAGGCCAAAAGTCGTCTAACACTTCTCCCTCTTCTTCCTTATCGCAAAGGCAAGACGCCACTCACAGACGAAGCCGAGCCGAGGAGCTGCGCGAGCCAGCCGTCTGTGCTGTTCTTCTTTGCGAGCCATCCCGAGCCCGTGCGAAGCCACACCGATCCGTCTCCTCCACGCGAAGCCGCGCCGCACCGATCTACCTTCTTTCATGCGAGACGATGCCGCACCGATCCGTCTCGCCCACGCGAAGCCGCGTCGCCGTCTGCCTCTCTCTTGCGAAGCCGAGTCGCACCGCGCCGATCTGCCATCATTCACACGAAGCAAACAGTGCCGATCTACCTTCCTTCACGCGAGACGACGCCGTGCCGATCCGTCTCCCCCACGTAAAGTCGCGCCGCCGTCTGCCTCCCTCTTGCGAAGCCGACCCGCACCGCGCTGATCTGCCATCATTCACGGGAAGCAAGCCGTGCTGCCTGCCGTCCAAGCCGAGCCGCCGCACACTGCCTTTTTGTCAGTATGACCCAGTAGAGCTTTCGGGGCTGTTTGTGGTAAGTGTGTAA

Coding sequence (CDS)

ATGAAGGGTGAGGTTCCTAAGGTAGCTTCCTGTGGAGTATGTGACATGATTGGCCACCACAACGATCAATGTTCTGACTTGAAAGAGCTAAGTACGATAGGCAACTTTAGGAGGAATGACCCACAAAGCAACACGTATATCCCTCGATGGAGGTATCATCCCAATCTTAGATTGGGTCCACAAGGCCAAAAGTCGTCTAACACTTCTCCCTCTTCTTCCTTATCGCAAAGGCAAGACGCCACTCACAGACGAAGCCGAGCCGAGGAGCTGCGCGAGCCAGCCGTCTGTGCTGTTCTTCTTTGCGAGCCATCCCGAGCCCGTGCGAAGCCACACCGATCCGTCTCCTCCACGCGAAGCCGCGCCGCACCGATCTACCTTCTTTCATGCGAGACGATGCCGCACCGATCCGTCTCGCCCACGCGAAGCCGCGTCGCCGTCTGCCTCTCTCTTGCGAAGCCGAGTCGCACCGCGCCGATCTGCCATCATTCACACGAAGCAAACAGTGCCGATCTACCTTCCTTCACGCGAGACGACGCCGTGCCGATCCGTCTCCCCCACGTAAAGTCGCGCCGCCGTCTGCCTCCCTCTTGCGAAGCCGACCCGCACCGCGCTGATCTGCCATCATTCACGGGAAGCAAGCCGTGCTGCCTGCCGTCCAAGCCGAGCCGCCGCACACTGCCTTTTTGTCAGTATGACCCAGTAGAGCTTTCGGGGCTGTTTGTGGTAAGTGTGTAA

Protein sequence

MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQDATHRRSRAEELREPAVCAVLLCEPSRARAKPHRSVSSTRSRAAPIYLLSCETMPHRSVSPTRSRVAVCLSLAKPSRTAPICHHSHEANSADLPSFTRDDAVPIRLPHVKSRRRLPPSCEADPHRADLPSFTGSKPCCLPSKPSRRTLPFCQYDPVELSGLFVVSV

Homology

[Close]

BLAST of PI0008532 vs. ExPASy TrEMBL
Match: A0A0A0KEQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 60
          +KGEVPKV SCGVC ++GHHNDQC ++KE+S +G +RRND QSN Y   WR  P+LR GP
Sbjct: 26 VKGEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGP 85

Query: 61 QGQKSSNTSPSSS 74
          Q  K +NT  +SS
Sbjct: 86 QEPKHNNTPSTSS 98

[Close]

BLAST of PI0008532 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 60
           +KG+VPKV SCGV  ++GHHNDQ  +LKE+S +  FRRND  SNTY   WR HPNLR GP
Sbjct: 40  VKGKVPKVVSCGVYGLLGHHNDQYPELKEISAMEGFRRNDSHSNTYNSYWRDHPNLRWGP 99

Query: 61  QGQKSSNTSPSSSLSQ 77
           Q  K +NTS SSS SQ
Sbjct: 100 QEPKPTNTSSSSSSSQ 115

[Close]

BLAST of PI0008532 vs. ExPASy TrEMBL
Match: A0A5D3CKE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00280 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 3   GEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQG 62
           G  PKV SCGV DM+ HH+DQC +LK +S IG FRRND QSNTY   WR H NLR GPQ 
Sbjct: 74  GVFPKVVSCGVGDMLDHHDDQCLELKGVSAIGGFRRNDSQSNTYNSSWRDHSNLRWGPQE 133

Query: 63  QKSSNTSPSSSL 75
            K +NTS SSSL
Sbjct: 134 PKPTNTSSSSSL 145

[Close]

BLAST of PI0008532 vs. ExPASy TrEMBL
Match: A0A5A7SR51 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001280 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 2   KGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQ 61
           KGEV KV SC VC M GHHNDQC  +KE+S +G F RND QSN Y   WR HPNLR G Q
Sbjct: 48  KGEVSKVVSCSVCGMQGHHNDQCPKIKEVSAMGGFIRNDSQSNAYNSGWRNHPNLRWGSQ 107

Query: 62  GQKSSNTSPSSSLS 76
             K +NTS SSS S
Sbjct: 108 EPKPTNTSSSSSSS 121

[Close]

BLAST of PI0008532 vs. ExPASy TrEMBL
Match: A0A5D3CX98 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00560 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 7  KVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 61
          KVASCG C ++GHHNDQC  LKE+S +G FRRND QSNTY   WR HPNL+ GP
Sbjct: 28 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWGP 81

[Close]

BLAST of PI0008532 vs. NCBI nr
Match: KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1   MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 60
           +KGEVPKV SCGVC ++GHHNDQC ++KE+S +G +RRND QSN Y   WR  P+LR GP
Sbjct: 188 VKGEVPKVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGP 247

Query: 61  QGQKSSNTSPSSS 74
           Q  K +NT  +SS
Sbjct: 248 QEPKHNNTPSTSS 260

[Close]

BLAST of PI0008532 vs. NCBI nr
Match: KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 3.6e-17
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1   MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 60
           +KG+VPKV SCGV  ++GHHNDQ  +LKE+S +  FRRND  SNTY   WR HPNLR GP
Sbjct: 40  VKGKVPKVVSCGVYGLLGHHNDQYPELKEISAMEGFRRNDSHSNTYNSYWRDHPNLRWGP 99

Query: 61  QGQKSSNTSPSSSLSQ 77
           Q  K +NTS SSS SQ
Sbjct: 100 QEPKPTNTSSSSSSSQ 115

[Close]

BLAST of PI0008532 vs. NCBI nr
Match: KAA0063400.1 (hypothetical protein E6C27_scaffold508G00320 [Cucumis melo var. makuwa] >TYK11658.1 hypothetical protein E5676_scaffold828G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-16
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 3   GEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQG 62
           G  PKV SCGV DM+ HH+DQC +LK +S IG FRRND QSNTY   WR H NLR GPQ 
Sbjct: 74  GVFPKVVSCGVGDMLDHHDDQCLELKGVSAIGGFRRNDSQSNTYNSSWRDHSNLRWGPQE 133

Query: 63  QKSSNTSPSSSL 75
            K +NTS SSSL
Sbjct: 134 PKPTNTSSSSSL 145

[Close]

BLAST of PI0008532 vs. NCBI nr
Match: KAA0032031.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16852.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-16
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 2   KGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQ 61
           KGEV KV SC VC M GHHNDQC  +KE+S +G F RND QSN Y   WR HPNLR G Q
Sbjct: 48  KGEVSKVVSCSVCGMQGHHNDQCPKIKEVSAMGGFIRNDSQSNAYNSGWRNHPNLRWGSQ 107

Query: 62  GQKSSNTSPSSSLS 76
             K +NTS SSS S
Sbjct: 108 EPKPTNTSSSSSSS 121

[Close]

BLAST of PI0008532 vs. NCBI nr
Match: TYK15878.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-13
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 7  KVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGP 61
          KVASCG C ++GHHNDQC  LKE+S +G FRRND QSNTY   WR HPNL+ GP
Sbjct: 28 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWGP 81

The following BLAST results are available for this feature:

BLAST of PI0008532 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEQ8	1.3e-17	60.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1	[more]
A0A5D3CW21	1.7e-17	63.16	Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va...	[more]
A0A5D3CKE7	1.5e-16	65.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SR51	1.9e-16	63.51	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CX98	2.0e-13	68.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0008532 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647060.1	2.7e-17	60.27	hypothetical protein Csa_022980 [Cucumis sativus]	[more]
KAA0042324.1	3.6e-17	63.16	Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var....	[more]
KAA0063400.1	3.0e-16	65.28	hypothetical protein E6C27_scaffold508G00320 [Cucumis melo var. makuwa] >TYK1165...	[more]
KAA0032031.1	3.9e-16	63.51	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16852.1 retrotranspos...	[more]
TYK15878.1	4.1e-13	68.52	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008532 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008532.1	PI0008532.1	mRNA