PI0008477 (gene) Melon (PI 482460) v1

Overview


Name	PI0008477
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	chr09: 5137854 .. 5138221 (+)
RNA-Seq Expression	PI0008477
Synteny	PI0008477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAACGCCTCCACCGCCCCTCCGCCACCCTTAAAAACCCGCCTCCGTTTTACGGTGGCGGAATGACACCACAAACCGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTCTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCGCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCATCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGTCCACTGCCGTCGCCGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACTGGTCCGAATCCTCTTCACAACTAAGTCC

mRNA sequence

AAACAAACGCCTCCACCGCCCCTCCGCCACCCTTAAAAACCCGCCTCCGTTTTACGGTGGCGGAATGACACCACAAACCGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTCTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCGCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCATCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGTCCACTGCCGTCGCCGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACTGGTCCGAATCCTCTTCACAACTAAGTCC

Coding sequence (CDS)

ATGACACCACAAACCGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTCTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCGCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCATCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGTCCACTGCCGTCGCCGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACTGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN

Homology

[Close]

BLAST of PI0008477 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 39/105 (37.14%), Postives = 46/105 (43.81%), Query Frame = 0


Query: 6   GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  SFRHAPPTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
            FR         P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
           MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61  PTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAEL DR QS AVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
           MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAELLDRRQ    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of PI0008477 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
           MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAELLDRRQ    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of PI0008477 vs. ExPASy TrEMBL
Match: A0A178WDE5 (CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-04
Identity = 39/105 (37.14%), Postives = 46/105 (43.81%), Query Frame = 0


Query: 6   GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  SFRHAPPTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
            FR         P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 9.9e-43
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
           MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61  PTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAEL DR QS AVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
           MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAELLDRRQ    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of PI0008477 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-24
Identity = 74/104 (71.15%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MTPQTGTSSRH--RARPTTALLLFFWVLLILAP--TTLCLHLPPPPPPSRKLARFSTASF 60
           M  +T T SRH   A  TTAL+LF WVLLILAP  TTLC  LPP P   RKL RFSTASF
Sbjct: 1   MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61  RHAPPTTTTSPAELLDRRQSTA-VAAAYGENKRLIHTGPNPLHN 100
           RHAPP   TSPAELL RRQS+A  AAAYG+ KRLIHTGPNPLHN
Sbjct: 61  RHAPP--ATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 62/96 (64.58%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 7   TSSRHRARPTT--ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66
           T + H +  TT  A LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 2   TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61

Query: 67  TSPAELLDRRQSTAVAAA-YGENKRLIHTGPNPLHN 100
           TSP ELL  R ++A AAA Y ++KRLIHTGPNPLHN
Sbjct: 62  TSPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of PI0008477 vs. NCBI nr
Match: KAG7032578.1 (hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 62/97 (63.92%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 7   TSSRHRARPTT--ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66
           T + H +  TT  A LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 2   TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61

Query: 67  TSPAELLDRRQSTAVAAA--YGENKRLIHTGPNPLHN 100
           TSP ELL  R ++A AAA  Y ++KRLIHTGPNPLHN
Sbjct: 62  TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 93

[Close]

BLAST of PI0008477 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 39/105 (37.14%), Postives = 46/105 (43.81%), Query Frame = 0


Query: 6   GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  SFRHAPPTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
            FR         P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of PI0008477 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 39/105 (37.14%), Postives = 46/105 (43.81%), Query Frame = 0


Query: 6   GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  SFRHAPPTTTTSPAELLDRRQSTAVAAAYGENKRLIHTGPNPLHN 100
            FR         P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of PI0008477 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	2.6e-06	37.14	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of PI0008477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY2	4.8e-43	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A5A7TY55	1.1e-42	92.93	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	1.1e-42	92.93	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A178WDE5	9.8e-04	37.14	CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1	[more]

BLAST of PI0008477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656246.1	9.9e-43	90.91	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
XP_008437694.1	2.2e-42	92.93	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG7016766.1	4.6e-24	71.15	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	1.1e-20	64.58	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032578.1	1.4e-20	63.92	hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of PI0008477 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	1.9e-07	37.14	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.9e-07	37.14	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..67
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 4..99
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008477.1	PI0008477.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development