PI0008426 (gene) Melon (PI 482460) v1

Overview


Name	PI0008426
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	cold-inducible RNA-binding protein B
Location	chr12: 23033845 .. 23035002 (+)
RNA-Seq Expression	PI0008426
Synteny	PI0008426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAATATATCCTAAAACGAAGTAAAATCGCCCGTTGGGGTTTGGAAGAAAGAAATGGCTAACCGACTTGGCACGAAGCTGTTCATCAGCAGTAGCTCTCTCTCTCTCTTTCTCTCACCCAAACATTTTTTTAAAATGGTTTCTCGTCAAATTCTCCATTGATGGTGGCTTTTTTTCTCAGGACTATCATTTTACACAACGATCGAACGACTAAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTGAAGGTACATATCTCCTCCTTAATCGGTTTTAGTTTCATTTTCTTTTCTCATCAATGGAAAATTCCAATTTCTTCAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCTGAAAGGGTTTGGTTTTATCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCAATGGATGGACGGGTATGTGTCCTCCCCTGCTTACGCACATAACCTGTTCGACGAAATGTCTGACTGAGATTTTATATCTTATTTACATTAGTCGCATCTGGAATATGGTTCTGTTGAATTTTTTTATTATTGGGAATTCATTTCAATTGGGCTTTGTGAAAACAATGCCTGCAATATGGATATCTATTATGTTTGAGTAATATGAGCTTTCAACTAAGATGCTAGTTTTGGTAGCTAGTTTGTATTCATGGACTGTATTTCAAGCTGGGTCAATTGTTAAGGAGATTTATGTAAGTTTTGTTTGGATAATGATGCAGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGAGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAGAAGACATGGGGATTTGGATCTTTGTGCCAGCTTCGGAGTTTAATCTATATGTGGTGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATTACGATTGTCATGAGTCTAATGTTTTAATCTCTTCTATTATTAATGTGTGTGATAGTGATAATTTAACTGCTGCCTTGGAATTTAAATCTTTAATTTTGGTCTGCTGAACAATTTCATCTCCTAATTTTTATTTTTGGTTAAAAACTATGGCTGTGTGATGTGTGATAATACTAAAGGGGATTTGTTCGAAGGGTTAAGCATCCTAAGTACAACCCTTGTTCGAAGGAAG

mRNA sequence

TCCAAATATATCCTAAAACGAAGTAAAATCGCCCGTTGGGGTTTGGAAGAAAGAAATGGCTAACCGACTTGGCACGAAGCTGTTCATCAGCAGACTATCATTTTACACAACGATCGAACGACTAAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTGAAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCTGAAAGGGTTTGGTTTTATCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCAATGGATGGACGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGAGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAGAAGACATGGGGATTTGGATCTTTGTGCCAGCTTCGGAGTTTAATCTATATGTGGTGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATTACGATTGTCATGAGTCTAATGTTTTAATCTCTTCTATTATTAATGTGTGTGATAGTGATAATTTAACTGCTGCCTTGGAATTTAAATCTTTAATTTTGGTCTGCTGAACAATTTCATCTCCTAATTTTTATTTTTGGTTAAAAACTATGGCTGTGTGATGTGTGATAATACTAAAGGGGATTTGTTCGAAGGGTTAAGCATCCTAAGTACAACCCTTGTTCGAAGGAAG

Coding sequence (CDS)

ATGGCTAACCGACTTGGCACGAAGCTGTTCATCAGCAGACTATCATTTTACACAACGATCGAACGACTAAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTGAAGCTCGGCTAGTTCGTGATCCGAAAACCCAGAGGCTGAAAGGGTTTGGTTTTATCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCAATGGATGGACGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGAGGTAGATCCTACATCTAGTTAA

Protein sequence

MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTSS

Homology

[Close]

BLAST of PI0008426 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 8  KLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQA 67
          KLFI  L+F T  E L+ +FS +G ISE  +V+D +T+R +GFGF+TF++P +AK A+ A
Sbjct: 6  KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81

[Close]

BLAST of PI0008426 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-14
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 7   TKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQ 66
           TKL++S LSF TT + L+  F  FG++    +V D    R KGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMDGRIVDGRLIFVEFAKTR 87
            M G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of PI0008426 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-14
Identity = 36/76 (47.37%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 8  KLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQA 67
          KLF+  L+F TT E L+ +FS +G ++E  +V+D +++R +GFGF+TF++P +AK A+ A
Sbjct: 7  KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of PI0008426 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-14
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 5   LGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKA 64
           + +KLFI  LSF TT + L   FS  G + EA++V D  + R KGFGF+TF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMDGRIVDGRLIFVEFAKTRK 88
           L   +G+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of PI0008426 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 8  KLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQA 67
          KLF+  LSF T  + L+ +FS +G ISE  +V+D +TQR +GFGF+TF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MDGRIVDGRLIFVEFA 84
          M+G+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of PI0008426 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.6e-40
Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLG++LFISRLS YTTIERLKSLFSPFGSIS+ARL+RDP+TQR KGFGF+TFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTSS 96
          AKKALQAMDGRIVDGRLIFVEFAKTRKH VDPTSS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of PI0008426 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLGT+LFISRLS YTTIERL++LFSPFGS+SEARL+RDPKTQR KGFGF+TFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR H VD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of PI0008426 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLGT+LFISRLS YTTIERL++LFSPFGS+SEARL+RDPKTQR KGFGF+TFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR H VD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of PI0008426 vs. ExPASy TrEMBL
Match: A0A0A0KQ26 (Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLG++LFISRLS YTT+ERLK+LFSPFGSISEARL+RDPKT+R KGFGF+TFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKT 86
          AKKAL+AMDGRIVDGRLIFVEFAKT
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]

BLAST of PI0008426 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MAN +G+++FISRLS YTTIERLKSLFS FG++SEARLVRDPKT R KGFGF+TFQSPVE
Sbjct: 1  MANGVGSQVFISRLSSYTTIERLKSLFSVFGAVSEARLVRDPKTHRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTR 87
          A+KA++AM+GRIVDGRLIFVEFA TR
Sbjct: 61 AEKAIRAMNGRIVDGRLIFVEFANTR 86

[Close]

BLAST of PI0008426 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 7.5e-40
Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLG++LFISRLS YTTIERLKSLFSPFGSIS+ARL+RDP+TQR KGFGF+TFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTSS 96
          AKKALQAMDGRIVDGRLIFVEFAKTRKH VDPTSS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of PI0008426 vs. NCBI nr
Match: XP_004135289.2 (small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypothetical protein Csa_008079 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLG++LFISRLS YTT+ERLK+LFSPFGSISEARL+RDPKT+R KGFGF+TFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTSS 96
          AKKAL+AMDGRIVDGRLIFVEFAKT KH VDPTSS
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTEKHGVDPTSS 95

[Close]

BLAST of PI0008426 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 7.8e-37
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1   MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
           MANR+G++LFISRLS YTTIERL+SLFSPFGS+SEARL+RDPKTQR KGFGF+TFQSPVE
Sbjct: 12  MANRVGSQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVE 71

Query: 61  AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTS 95
           AKKALQAM+GRIVDGRLIFVEFAKTR+H VD  S
Sbjct: 72  AKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAAS 105

[Close]

BLAST of PI0008426 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLGT+LFISRLS YTTIERL++LFSPFGS+SEARL+RDPKTQR KGFGF+TFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKTR H VD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of PI0008426 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MANRLGT+LFISRLS YTTIERL++LFSPFGS+SEARL+RDPKTQR KGFGF+TFQSP E
Sbjct: 1  MANRLGTQLFISRLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPDE 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHEVDPTS 95
          AKKALQAMDGRIVDGRLIFVEFAKT  H VD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAAS 94

[Close]

BLAST of PI0008426 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1  MANRLGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVE 60
          MA R+  +LF+SRLS YTT + L+ LFSPFG I EARL+RD +TQR KGFGFITF S  +
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALQAMDGRIVDGRLIFVEFAK 85
          A+KAL+++DG+IVDGRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of PI0008426 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-17
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12  SRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQAMDGR 71
           S LS YTT + L+ LF+PF     ARL++D +TQR KGFGFITF+S  +A+KAL+A++G+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAKTRKHEVD-PTSS 96
           IV+GRLIFVE AK    EV+ PT+S
Sbjct: 136 IVNGRLIFVETAK----EVEAPTTS 151

[Close]

BLAST of PI0008426 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 7   TKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKALQ 66
           TKL++S LSF TT + L+  F  FG++    +V D    R KGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMDGRIVDGRLIFVEFAKTR 87
            M G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of PI0008426 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-15
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 5   LGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKA 64
           + +KLFI  LSF TT + L   FS  G + EA++V D  + R KGFGF+TF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMDGRIVDGRLIFVEFAKTRK 88
           L   +G+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of PI0008426 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5   LGTKLFISRLSFYTTIERLKSLFSPFGSISEARLVRDPKTQRLKGFGFITFQSPVEAKKA 64
           L +K+ +  L F T+ + LK  FS FG I+E +L++D   +R KG+ FI F S  +A  A
Sbjct: 38  LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97

Query: 65  LQAMDGRIVDGRLIFVEFAKTRKHE 90
           ++ MD R+ +GR+I+++ AK  K +
Sbjct: 98  IETMDRRMYNGRMIYIDIAKPGKRD 122

The following BLAST results are available for this feature:

BLAST of PI0008426 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	1.5e-14	51.32	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q9FX45	2.5e-14	47.50	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q28IQ9	3.3e-14	47.37	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q9FFZ6	5.7e-14	46.99	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
P60826	1.3e-13	50.00	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of PI0008426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5W5	3.6e-40	90.53	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A6J1KF23	6.4e-37	86.17	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	6.4e-37	86.17	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0KQ26	1.5e-33	87.06	Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE...	[more]
A0A6J1DM71	3.4e-30	80.23	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of PI0008426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457543.1	7.5e-40	90.53	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
XP_004135289.2	3.2e-38	86.32	small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypo...	[more]
XP_038895198.1	7.8e-37	85.11	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_022949004.1	1.3e-36	86.17	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
KAG6607208.1	6.6e-36	85.11	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of PI0008426 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	1.7e-26	66.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	2.5e-17	57.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.8e-15	47.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	4.0e-15	46.99	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G20030.1	1.1e-12	38.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 1.5E-25 score: 100.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 1.0E-21 score: 76.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.518938
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..91 e-value: 2.3E-29 score: 104.4
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 5..88
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008426.1	PI0008426.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0017069	snRNA binding
molecular_function	GO:0003676	nucleic acid binding