PI0008287 (gene) Melon (PI 482460) v1

Overview
NamePI0008287
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr11: 7902552 .. 7902990 (-)
RNA-Seq ExpressionPI0008287
SyntenyPI0008287
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAAAAACTGAAATCTCTGCTCAAACAGAACCTCCAACACTTCAAAAGGTTTACTTAATTCGTCTATTAGAAGAAGCCTGTAATGAATGAAATATGATTGCACTAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAAATTTAACCTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCAATATTCATATCATCCAGGTTTTCGAGGTAGGAGGTAATAAAAACAATCACGTGATTGACACTTTTTTCATCGAAACTGGAATAATAACAGTAGGCCGCAATTTTCAGATATGTGGATGTTTGGTCACACAACTATTTGGTATTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTCTACTTCTGGAAATTGTAATTTTCTATTTTCTCATAGTCAGAATAGTGGTCCTGTTAAAAATGGATAA

mRNA sequence

ATGATTCTAAAAACTGAAATCTCTGCTCAAACAGAACCTCCAACACTTCAAAAGGTTTACTTAATTCGTCTATTAGAAGAAGCCTTTCTTTACCTTCAATCAATCTTACTGCTCAAATTTAACCTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCAATATTCATATCATCCAGGTTTTCGAGGTAGGAGGTAATAAAAACAATCACGTGATTGACACTTTTTTCATCGAAACTGGAATAATAACAGTAGGCCGCAATTTTCAGATATGTGGATGTTTGGTCACACAACTATTTGGTATTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTCTACTTCTGGAAATTGTAATTTTCTATTTTCTCATAGTCAGAATAGTGGTCCTGTTAAAAATGGATAA

Coding sequence (CDS)

ATGATTCTAAAAACTGAAATCTCTGCTCAAACAGAACCTCCAACACTTCAAAAGGTTTACTTAATTCGTCTATTAGAAGAAGCCTTTCTTTACCTTCAATCAATCTTACTGCTCAAATTTAACCTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCAATATTCATATCATCCAGGTTTTCGAGGTAGGAGGTAATAAAAACAATCACGTGATTGACACTTTTTTCATCGAAACTGGAATAATAACAGTAGGCCGCAATTTTCAGATATGTGGATGTTTGGTCACACAACTATTTGGTATTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTCTACTTCTGGAAATTGTAATTTTCTATTTTCTCATAGTCAGAATAGTGGTCCTGTTAAAAATGGATAA

Protein sequence

MILKTEISAQTEPPTLQKVYLIRLLEEAFLYLQSILLLKFNLRKMQVISLLNLNIHIIQVFEVGGNKNNHVIDTFFIETGIITVGRNFQICGCLVTQLFGITILIMGYQNGNNSTSGNCNFLFSHSQNSGPVKNG
Homology
[Close]
BLAST of PI0008287 vs. ExPASy TrEMBL
Match: A0A0A0KHG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205850 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.4e-22
Identity = 78/128 (60.94%), Postives = 82/128 (64.06%), Query Frame = 0 

Query: 1   MILKTEISAQTEPPTLQKVYLIRLLEEAF---------LYLQSILL---LKFNLRKMQVI 60
           M LKTE SAQTE PTLQKVY IRLLEEA            L SI L   LK         
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SLLNLNIHIIQVFEVGGNKNNHVIDTFFIETGIITVGRNFQICGCLVTQLFGITILIMGY 117
           S    + H    F   GN+NNHV+DTFFIETGIIT GRN QICG LVTQLFG+TILIMGY
Sbjct: 61  SESLCSYH--PSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGY 120

[Close]
BLAST of PI0008287 vs. NCBI nr
Match: KGN47211.1 (hypothetical protein Csa_017016 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 78/128 (60.94%), Postives = 82/128 (64.06%), Query Frame = 0 

Query: 1   MILKTEISAQTEPPTLQKVYLIRLLEEAF---------LYLQSILL---LKFNLRKMQVI 60
           M LKTE SAQTE PTLQKVY IRLLEEA            L SI L   LK         
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SLLNLNIHIIQVFEVGGNKNNHVIDTFFIETGIITVGRNFQICGCLVTQLFGITILIMGY 117
           S    + H    F   GN+NNHV+DTFFIETGIIT GRN QICG LVTQLFG+TILIMGY
Sbjct: 61  SESLCSYH--PSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGY 120

The following BLAST results are available for this feature:
BLAST of PI0008287 vs.
Match NameE-valueIdentityDescription
BLAST of PI0008287 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHG06.4e-2260.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205850 PE=4 SV=1[more]
BLAST of PI0008287 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47211.11.3e-2160.94hypothetical protein Csa_017016 [Cucumis sativus][more]
BLAST of PI0008287 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008287.1PI0008287.1mRNA