PI0008281 (gene) Melon (PI 482460) v1

Overview


Name	PI0008281
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 10334076 .. 10334842 (+)
RNA-Seq Expression	PI0008281
Synteny	PI0008281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTTCTTCAAGTGCCCCCAAGCACCACTGGACGAAAGAGGAGGATGTCACCCTCGTTGAATGTCTGGTGGAATTGGTATCAACCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAGTTACCATAATCATCTGCAGAAAATGATGGCCGAGAGGATGCTGGGACATAACATAACGGCTTCGACCATTGATTATCGAATAAAGACTCTAAAAAGAGCGTTCCAAGCCATATCTGAACTAAGGGGCCCATCGTGCAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTACGACAATTGGGTGAAGGTATGTTCTTGATTCTGTCCATTACTGTTCGTTTCTAATAATAAATTGACTAATTAGTTCCTGCAACACTTATACAGAGTCATCTAGCCGCGAAGGGTCTCCTAAACAAATCATTTCCCCATTACAACGACCTTTGCTATGTCTTTCGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCAATGTTGGGTCGAACGTGTCTGTAGGGTACGATGAATTTTCCGCTTATGACGGAGACGATATGGAATTCCCCACGATATACAGTCAGGGACTGAACATGTCACCTGACGACATAATAGGCACACGACCCGGTCGATTGTCTGAGGGTAGGGTGGGTTCGAGCGGTTCGAAGAGGAAACGGGGAGGGCAGGCATTCAAGACGGCAAAAATTATTCGTAGTGCCATGGAATATGCGAATGACTAG

mRNA sequence

ATGGAAACTTCTTCAAGTGCCCCCAAGCACCACTGGACGAAAGAGGAGGATGTCACCCTCGTTGAATGTCTGGTGGAATTGGTATCAACCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAGTTACCATAATCATCTGCAGAAAATGATGGCCGAGAGGATGCTGGGACATAACATAACGGCTTCGACCATTGATTATCGAATAAAGACTCTAAAAAGAGCGTTCCAAGCCATATCTGAACTAAGGGGCCCATCGTGCAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCGAAGGGTCTCCTAAACAAATCATTTCCCCATTACAACGACCTTTGCTATGTCTTTCGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCAATGTTGGGTCGAACGTGTCTGTAGGGTACGATGAATTTTCCGCTTATGACGGAGACGATATGGAATTCCCCACGATATACAGTCAGGGACTGAACATGTCACCTGACGACATAATAGGCACACGACCCGGTCGATTGTCTGAGGGTAGGGTGGGTTCGAGCGGTTCGAAGAGGAAACGGGGAGGGCAGGCATTCAAGACGGCAAAAATTATTCGTAGTGCCATGGAATATGCGAATGACTAG

Coding sequence (CDS)

ATGGAAACTTCTTCAAGTGCCCCCAAGCACCACTGGACGAAAGAGGAGGATGTCACCCTCGTTGAATGTCTGGTGGAATTGGTATCAACCGGCGGGTGGAGGTCGAACAACGGGACGTTTAGACCCAGTTACCATAATCATCTGCAGAAAATGATGGCCGAGAGGATGCTGGGACATAACATAACGGCTTCGACCATTGATTATCGAATAAAGACTCTAAAAAGAGCGTTCCAAGCCATATCTGAACTAAGGGGCCCATCGTGCAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCGAAGGGTCTCCTAAACAAATCATTTCCCCATTACAACGACCTTTGCTATGTCTTTCGAAGAGATCGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCAATGTTGGGTCGAACGTGTCTGTAGGGTACGATGAATTTTCCGCTTATGACGGAGACGATATGGAATTCCCCACGATATACAGTCAGGGACTGAACATGTCACCTGACGACATAATAGGCACACGACCCGGTCGATTGTCTGAGGGTAGGGTGGGTTCGAGCGGTTCGAAGAGGAAACGGGGAGGGCAGGCATTCAAGACGGCAAAAATTATTCGTAGTGCCATGGAATATGCGAATGACTAG

Protein sequence

METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLLNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGLNMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND

Homology

[Close]

BLAST of PI0008281 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 6.2e-78
Identity = 145/229 (63.32%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+ EK L+D+WVKSH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 229

[Close]

BLAST of PI0008281 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 4.5e-76
Identity = 144/221 (65.16%), Postives = 170/221 (76.92%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH+WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           + ASTID RIK LKR F AI+E+RGP+CSGF WNDE KCI+AEK ++DNWVKSHLAAKGL
Sbjct: 61  VHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           L K F HY++L YVF +DRATGG AE+FA+VGSN   GY+ F A    D  F  +YSQ L
Sbjct: 121 LTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQEL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIR 222
           NMSPD+++GTR  R+SEGR  SSGSKRKRGGQA   A   R
Sbjct: 181 NMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTR 221

[Close]

BLAST of PI0008281 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76
Identity = 143/229 (62.45%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+AEK ++D+W  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 227

[Close]

BLAST of PI0008281 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75
Identity = 141/229 (61.57%), Postives = 173/229 (75.55%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+ EK L+D+WVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+F ++GSN   GYD F+A    D  F  +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G    +  I+ +A+EY N+
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNE 229

[Close]

BLAST of PI0008281 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-75
Identity = 143/229 (62.45%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+AEK ++D+W  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 227

[Close]

BLAST of PI0008281 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.4 bits (768), Expect = 1.3e-77
Identity = 145/229 (63.32%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+ EK L+D+WVKSH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 229

[Close]

BLAST of PI0008281 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 9.2e-76
Identity = 144/221 (65.16%), Postives = 170/221 (76.92%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH+WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           + ASTID RIK LKR F AI+E+RGP+CSGF WNDE KCI+AEK ++DNWVKSHLAAKGL
Sbjct: 61  VHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           L K F HY++L YVF +DRATGG AE+FA+VGSN   GY+ F A    D  F  +YSQ L
Sbjct: 121 LTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQEL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIR 222
           NMSPD+++GTR  R+SEGR  SSGSKRKRGGQA   A   R
Sbjct: 181 NMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTR 221

[Close]

BLAST of PI0008281 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-75
Identity = 143/229 (62.45%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+AEK ++D+W  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 227

[Close]

BLAST of PI0008281 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-75
Identity = 141/229 (61.57%), Postives = 173/229 (75.55%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+ +LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+ EK L+D+WVKSH  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+F ++GSN   GYD F+A    D  F  +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G    +  I+ +A+EY N+
Sbjct: 181 NMSPDDLMETRTVRVSERRNVSSGSKRKRPGHVTDSGDIVCTAIEYRNE 229

[Close]

BLAST of PI0008281 vs. NCBI nr
Match: KAA0048377.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 3.5e-75
Identity = 143/229 (62.45%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 1   METSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHN 60
           M +SS  PKH WTKEE+  LVECLVELV+ GGWRS+NGTFRP Y N L +MMA ++ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  ITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGL 120
           I ASTID RIK +KR F A++E+RGP+CSGF WNDE KCI+AEK ++D+W  SH AAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKSFPHYNDLCYVFRRDRATGGRAETFANVGSNVSVGYDEFSAYDGDDMEFPTIYSQGL 180
           LNKSF HY++L YVF +DRATGGRAE+FA++GSN   GYD  +A    D +FP +YS GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 181 NMSPDDIIGTRPGRLSEGRVGSSGSKRKRGGQAFKTAKIIRSAMEYAND 230
           NMSPDD++ TR  R+SE R  SSGSKRKR G A  +  I+R+A+EY N+
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNE 227

[Close]

BLAST of PI0008281 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 37/141 (26.24%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 2   ETSSSAPKHHWTKEEDVTLVECLVELVSTGGWRSNNGTFRPSYHNHLQKMMAERMLGHNI 61
           E +S   +  WT   D  L++ LVE V+ G       TF  S  N +      +  G   
Sbjct: 317 EQNSDRTRIFWTPPMDYHLIDLLVEQVNNG--NRVGQTFITSAWNEMVTAFNAK-FGSQH 376

Query: 62  TASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKGLL 121
               +  R K L+R +  I  L     +GFSW+     +IA+ ++++ ++++H  A+   
Sbjct: 377 NKDVLKNRYKHLRRLYNDIKFLL--EQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYR 436

Query: 122 NKSFPHYNDLCYVFRRDRATG 143
            K+ P Y +LC++F ++ + G
Sbjct: 437 VKTIPSYPNLCFIFGKETSDG 452

[Close]

BLAST of PI0008281 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 60  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKG 119
           N     +  R K+L+R F AI  +      GF+W++E + + A+ N++ +++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 120 LLNKSFPHYNDLC 133
            + +  P+Y DLC
Sbjct: 291 FMTRPIPYYKDLC 301

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BLAST of PI0008281 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 60  NITASTIDYRIKTLKRAFQAISELRGPSCSGFSWNDELKCIIAEKNLYDNWVKSHLAAKG 119
           N     +  R K+L+R F AI  +      GF+W++E + + A+ N++ +++K+H  A+ 
Sbjct: 231 NFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQ 290

Query: 120 LLNKSFPHYNDLC 133
            + +  P+Y DLC
Sbjct: 291 FMTRPIPYYKDLC 301

The following BLAST results are available for this feature:

BLAST of PI0008281 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1M0	6.2e-78	63.32	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UIE9	4.5e-76	65.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	9.9e-76	62.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U098	1.3e-75	61.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UME4	1.7e-75	62.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0008281 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05082.1	1.3e-77	63.32	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054347.1	9.2e-76	65.16	retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p...	[more]
KAA0035621.1	2.1e-75	62.45	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0047075.1	2.7e-75	61.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048377.1	3.5e-75	62.45	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	1.2e-09	26.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	3.9e-08	30.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.9e-08	30.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..109 e-value: 5.3E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..213
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..215
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008281.1	PI0008281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane