PI0008256 (gene) Melon (PI 482460) v1

Overview
NamePI0008256
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Locationchr04: 31359896 .. 31360051 (+)
RNA-Seq ExpressionPI0008256
SyntenyPI0008256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA

mRNA sequence

ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA

Coding sequence (CDS)

ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA

Protein sequence

MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA
Homology
[Close]
BLAST of PI0008256 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA 52
          MTSESTRSQ+IWM    GFW+FN DASWNDVEEIS TSWVVR S GAFILA
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILA 51

[Close]
BLAST of PI0008256 vs. ExPASy TrEMBL
Match: A0A0A0LGW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 1  MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEIS 36
          MTSES RSQEIWM  +  FWKFN DASWNDVEEI+
Sbjct: 3  MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT 37

[Close]
BLAST of PI0008256 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 8.5e-14
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA 52
          MTSESTRSQ+IWM    GFW+FN DASWNDVEEIS TSWVVR S GAFILA
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILA 51

[Close]
BLAST of PI0008256 vs. NCBI nr
Match: KGN60244.1 (hypothetical protein Csa_002227 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 1  MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEIS 36
          MTSES RSQEIWM  +  FWKFN DASWNDVEEI+
Sbjct: 3  MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT 37

The following BLAST results are available for this feature:
BLAST of PI0008256 vs.
Match NameE-valueIdentityDescription
BLAST of PI0008256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6P64.1e-1480.39RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LGW52.4e-0677.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1[more]
BLAST of PI0008256 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038679.18.5e-1480.39hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
KGN60244.15.0e-0677.14hypothetical protein Csa_002227 [Cucumis sativus][more]
BLAST of PI0008256 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0008256.1PI0008256.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity