PI0008139 (gene) Melon (PI 482460) v1

Overview


Name	PI0008139
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L18
Location	chr05: 2731642 .. 2734758 (+)
RNA-Seq Expression	PI0008139
Synteny	PI0008139

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATTGAAAAATTCTTTTCTTCTTTTCCCTTGTATATGCTATGTCGCAGCCGCGCATCACCACCAACGCACAGTCGGTTTTCTTTCTTCTCCCTTACTCCCTCCAGCAGTTCCACAATTAAGTTTCCTTCCAATCATTTTGGGTCCTTAGTCATATTTTGTTTTATCCATTTCAAACGCAATAAATGGTTTCAAATCCATTCTGATTTGAAATCCTTACAAGTCCATTGGTTCCAAACAGAGGGTTTTATCGCAGAAATTTGTTTCGCCTTTTGAATTCCTTTCATTTGTGTTCTGTTGGGTAATTTCTCTCTTAGCTTTTCATATTATTTCTTTGTTTTCTTGATGGGTTTTGATTTTAAGCTACCAATAATGCACATAACTTGTTCGAATTCATGGCTTCTTCCATTTTTTTACTCGTTTTTAATATTTGAAATGCTCGCTAGTGTGAACTTTGTATTGCCGGATAACTGTTCGACACTATGCCTCATAAAGGTTGAACCTATGTGTGTTCTTCTATCATAAAGTTAAGCCTTATCAAGTGTACTCATGCTCATTTAGTAGTTTAATCCGTTTATTAAACCTTTGAGTCCTGAAATATTTTCATTTAGCTGGGAGATGTAATATTTCGCCTCTTGTTTTCTTTTAGGTGCTCATAGGAGTTGAAATCGGGTTCTTTCAGTACAAAAGGCCAAAGGGGGGCTGGGTTAGCTAGTAGAAGAAGGAGAAGATGTTGAAACACTTTCTTGGAAATGTGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTAAAATTTCATCACGTAGCTATCAATATTCTTGTTTTATAAATCTTTCAGTTTTTTAGTAAGCGAAATCTCCAAAATAAAAAGACCATACACTATACATCTTCAAAATCACAAGATTTCACTCTTTGCATAAATTTACATAATAAGGTAACATCCCATATCAGAAAACAATGTTGACTGCACCAAAAAGGGGATTTACCCAACAACAATATCATGGATTGAATAGTTTTGAAAAGCTTTGGATAGACCACACCAAGAAGCCATGTTATGCTTGATTTATTCGAAAATTTCTTCCCATGAGGAGCATGTATGATCAAAGATCTTATTCTTCTCATACCAAATTCCCATTGGTAGTCTTCACAATGTGGATCCCAAGAATCCTGGTGTTTCCTTTGAAACAGTGACTGCTTAAGGAACCAAATATGTTACTTCTAGTTTTAGCTTTTAAATTAATAGCTTGAGTACTTGCAAATAACTTAAAAAATACCTCTCGGCTCTCATAAACTATAATGGGAGGATATTTCTCTAGAGCTCCCCTTTTTATCCCACTTCGTTCATTGCGTTGTGTCGAAAGGTAAGGAAACATACTTTTGGTAAGATCAGTGGGTAGGGGATAGACCCCTTTGCTCTATGTTTCCTTGTTCCTATCATTTGGTGCCCCTTAAGAACCGTTTGGTTCTTACTTTTTTGTTTGGTCTACGCACTCCATTTCTTTTTTCATTTGGTTGTCGTTGTTTGTTGGCCATTCGGGAAATGACATAGGTCACCTCTCTTGTGTATTTGATTGAAGATTTTAGTTTTAGGCTTGGGAGAAGAGATGTTCACGTTTTAAAAGTGTAAAATTAAATATTAAATTAATTTTGAGTGATTAAAAATGTGTTTTGAAGTAATTTTAAATATCACAAAAGTGATTTTAACAATTTCTAAATTACTCTCAATCATGTATTTAATCATTTTCATAGCCGTATTATAGTTAGTTAGGTGGCTGGACTTTATCTCCTATAAATGGAAGGTCTTTCTAAAGATGTAAGGCAATTTTCATAAAACTAGTTAAGATTTCTACACCTCCTAAACTGAATAGCATCTCATCTATGAAGCGTAAGAGGTGTTGATTTCATACTTGGTAACTAGACTAGAGTTATAAATATTCTACAAGTTTTTTATATGAATTGTTTTAGGGCTAGACAGTAATTCTTATATAAGTTTGCCTAGACGCCAACACTAATATAGAAAATCATATGTTCATATTTAATCAATATGTATATCCCTATATCCTCTTATTGGCTATGCTCTTGACTTCTAAAAGACTAACCTCACATGATGTTATACAAGAAGTTTTGGTCAATAATCATCATTGTGTTCTAATATTCATGCTGTTTAAATTATTTTCCATCTTTTGCATTGGAATAATCACTTGCCCAGATTTAATCCAACTTTTTTAAACCTTTGGCTTTGATTATCCAATGCTTGATTGATTGCTCTATCACAGGTTCATTATGCACCCAGAAGCTTCTTTGGTGTAGAGGACTTCTTAGATGATAATAATAGTCGGCCATATACATACCAGAAATTGAAAAAATCCAAGAATCCAAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCATCACTTACACACAGGGTGACTTGCAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGATAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAGATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAAAAAACACCTTATATAGTTTAGGATCATTGATAAATTGTCTTCTGAATCTTTTATTTAGGTGTTTTAATATCAAGGTTTAGATACCGTCTGGATTGCAGTGTTTGTTTCTTGTTGTCCAAGAATTCTTAAGGCCTTTTCCTTCTTGAAGAAACCAATCAATTTCTTGAAGTTGTACATTCTACAAATTTTAAGAGATTTTAGTTTTCAGCTCTTGGATCAAAATGTTTACAGCTTGTAAATGTAAAGTCTTTGTATTTTATTAACAGAGCTCTTGACCTTATGGCATAATCTAATTGGATCGATTTGGAAAAAAAAGTCACTTTTTACTCATAA

mRNA sequence

AAATATTGAAAAATTCTTTTCTTCTTTTCCCTTGTATATGCTATGTCGCAGCCGCGCATCACCACCAACGCACAGTCGGTTTTCTTTCTTCTCCCTTACTCCCTCCAGCAGTTCCACAATTAAGTTTCCTTCCAATCATTTTGGGTCCTTAGTCATATTTTGTTTTATCCATTTCAAACGCAATAAATGGTTTCAAATCCATTCTGATTTGAAATCCTTACAAGTCCATTGGTTCCAAACAGAGGGTTTTATCGCAGAAATTTGTTTCGCCTTTTGAATTCCTTTCATTTGTGTTCTGTTGGGTGCTCATAGGAGTTGAAATCGGGTTCTTTCAGTACAAAAGGCCAAAGGGGGGCTGGGTTAGCTAGTAGAAGAAGGAGAAGATGTTGAAACACTTTCTTGGAAATGTGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTATGCACCCAGAAGCTTCTTTGGTGTAGAGGACTTCTTAGATGATAATAATAGTCGGCCATATACATACCAGAAATTGAAAAAATCCAAGAATCCAAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCATCACTTACACACAGGGTGACTTGCAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGATAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAGATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAAAAAACACCTTATATAGTTTAGGATCATTGATAAATTGTCTTCTGAATCTTTTATTTAGGTGTTTTAATATCAAGGTTTAGATACCGTCTGGATTGCAGTGTTTGTTTCTTGTTGTCCAAGAATTCTTAAGGCCTTTTCCTTCTTGAAGAAACCAATCAATTTCTTGAAGTTGTACATTCTACAAATTTTAAGAGATTTTAGTTTTCAGCTCTTGGATCAAAATGTTTACAGCTTGTAAATGTAAAGTCTTTGTATTTTATTAACAGAGCTCTTGACCTTATGGCATAATCTAATTGGATCGATTTGGAAAAAAAAGTCACTTTTTACTCATAA

Coding sequence (CDS)

ATGTTGAAACACTTTCTTGGAAATGTGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTATGCACCCAGAAGCTTCTTTGGTGTAGAGGACTTCTTAGATGATAATAATAGTCGGCCATATACATACCAGAAATTGAAAAAATCCAAGAATCCAAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCATCACTTACACACAGGGTGACTTGCAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGATAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACTCCTAGAGAGAGGGACAGATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAA

Protein sequence

MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPYTYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGIDVKIYLE

Homology

[Close]

BLAST of PI0008139 vs. ExPASy Swiss-Prot
Match: C4Z2U6 (50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.0e-04
Identity = 35/119 (29.41%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 66  KKSK---NPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 125
           KKS+     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 126 KAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGID 182
           KA L+  +++ A  AVG ++A RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

[Close]

BLAST of PI0008139 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.0e-04
Identity = 27/92 (29.35%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILADRAREA 149
           L V  S + + A +   V  K +A A T   D+K+ L++ +D  A  AVG++LA+RA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 150 DVYTASYTPRERDRFEGKIRAVVQSLIDNGID 182
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

[Close]

BLAST of PI0008139 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.7e-97
Identity = 179/187 (95.72%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKHFLGN+RKHVVCACEVNRFRPYLLVPTSDFHKGEVH APRSFFG+EDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKHFLGN+ KHVVCACEVNRFRPYLLVPTSDFHKGEVH APRSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 174/187 (93.05%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKH LGN+RKH VCACEVNR RPYL VPTSDFHKGE HYAPRSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL++RA+EADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.6e-94
Identity = 172/187 (91.98%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKH LGN+RKHVVC+CEVNR RPYL VPTSDFHKGE HYAPRSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRIL++RA+EADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 174/187 (93.05%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKHFLG +RKHVVC CEVNR RPY  VPTSDFHKGEVH+APRSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 364.8 bits (935), Expect = 4.5e-97
Identity = 179/187 (95.72%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           ML+HFLGN+RKHVVCACEVNR RPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDD+NSRPY
Sbjct: 1   MLRHFLGNMRKHVVCACEVNRVRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK+KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. NCBI nr
Match: XP_004139203.1 (uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736383.1 uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_019355 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 7.7e-97
Identity = 179/187 (95.72%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKHFLGN+RKHVVCACEVNRFRPYLLVPTSDFHKGEVH APRSFFG+EDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKHFLGN+ KHVVCACEVNRFRPYLLVPTSDFHKGEVH APRSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILA+RAREADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >KAG7030275.1 hypothetical protein SDJN02_08622 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.8 bits (909), Expect = 4.7e-94
Identity = 174/187 (93.05%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKH LGN+RKH VCACEVNR RPYL VPTSDFHKGE HYAPRSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL++RA+EADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 172/187 (91.98%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MLKHFLGNVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSRPY 60
           MLKH LGN+RKHVVC+CEVNR RPYL VPTSDFHKGE HYAPRSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRIL++RA+EADVYTASYTPRERD+FEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of PI0008139 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-74
Identity = 135/189 (71.43%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 1   MLKHFLG--NVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSR 60
           MLK  +   ++ K  +      + RP++   +  FH G   +APRSFFGVED++DD+ SR
Sbjct: 1   MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 60

Query: 61  PYTYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 61  PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 120

Query: 121 SKDIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRIL++RA+EADVYTASYTPR++D+FEGKIRAVVQSLIDN
Sbjct: 121 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 180

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 181 GIDVKIYLD 189

[Close]

BLAST of PI0008139 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-74
Identity = 135/189 (71.43%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 1   MLKHFLG--NVRKHVVCACEVNRFRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDNNSR 60
           MLK  +   ++ K  +      + RP++   +  FH G   +APRSFFGVED++DD+ SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKLKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRIL++RA+EADVYTASYTPR++D+FEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

[Close]

BLAST of PI0008139 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-24
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 69  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQS 128
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVG +LA R+ E D++   YTPR+ D+ EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of PI0008139 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-22
Identity = 50/113 (44.25%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 68  SKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQ 127
           +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+  + 
Sbjct: 72  AKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIP 131

Query: 128 SRSDIPACLAVGRILADRAREADVYTASYTPRERDRFEGKIRAVVQSLIDNGI 181
           S  D  AC  +G+++A+R+ EADVY  SY PR+ +R EGK+  V+ ++ ++GI
Sbjct: 132 SLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of PI0008139 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C4Z2U6	8.0e-04	29.41	50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 /...	[more]
C3MAZ6	8.0e-04	29.35	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]

BLAST of PI0008139 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI4	3.7e-97	95.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
A0A1S3C286	1.4e-96	95.72	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A6J1G387	2.3e-94	93.05	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1KIR9	6.6e-94	91.98	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A6J1DBH5	1.5e-93	93.05	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of PI0008139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890306.1	4.5e-97	95.72	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_004139203.1	7.7e-97	95.72	uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharact...	[more]
XP_008455473.1	2.9e-96	95.72	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]
XP_022946296.1	4.7e-94	93.05	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]
XP_022999138.1	1.4e-93	91.98	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]

BLAST of PI0008139 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	1.5e-74	71.43	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.5e-74	71.43	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	1.9e-24	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	3.0e-22	44.25	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..181 e-value: 6.8E-8 score: 32.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187
None	No IPR available	GENE3D	3.30.420.100		coord: 65..181 e-value: 5.1E-16 score: 61.1
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 1.02258E-20 score: 80.2767
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 66..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008139.2	PI0008139.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0019829	ATPase-coupled cation transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome