PI0007937 (gene) Melon (PI 482460) v1

Overview


Name	PI0007937
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 24289590 .. 24289835 (-)
RNA-Seq Expression	PI0007937
Synteny	PI0007937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCTGACGGCATCATGGGCACACGACTTGATCGCTCAGATGAGGGTAAGACTGGTCCAAGCATGTCAAAGAGGAAGCGAGGAGGCCAATCCTTAGAAACGGCAGAAATCATTCGCAATGCAATGAAATATGCGAATAACCAGCTGAAGGCCATTGCAGAATGGTCGAATGTACAACGCCAAGATGGAAGCGCAATATTGCGGAGGTCGTTAGACAGTTGTAGGGAATCCCTGAATGAGTAG

mRNA sequence

ATGTCGCCTGACGGCATCATGGGCACACGACTTGATCGCTCAGATGAGGGTAAGACTGGTCCAAGCATGTCAAAGAGGAAGCGAGGAGGCCAATCCTTAGAAACGGCAGAAATCATTCGCAATGCAATGAAATATGCGAATAACCAGCTGAAGGCCATTGCAGAATGGTCGAATGTACAACGCCAAGATGGAAGCGCAATATTGCGGAGGTCGTTAGACAGTTGTAGGGAATCCCTGAATGAGTAG

Coding sequence (CDS)

ATGTCGCCTGACGGCATCATGGGCACACGACTTGATCGCTCAGATGAGGGTAAGACTGGTCCAAGCATGTCAAAGAGGAAGCGAGGAGGCCAATCCTTAGAAACGGCAGAAATCATTCGCAATGCAATGAAATATGCGAATAACCAGCTGAAGGCCATTGCAGAATGGTCGAATGTACAACGCCAAGATGGAAGCGCAATATTGCGGAGGTCGTTAGACAGTTGTAGGGAATCCCTGAATGAGTAG

Protein sequence

MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQRQDGSAILRRSLDSCRESLNE

Homology

[Close]

BLAST of PI0007937 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           M  D IMGTR DRS EG+TG S SKRK+GGQ++ET EIIRN M+++N++LKAI EW NVQ
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

Query: 61  RQDGSAIL 69
           RQD SA L
Sbjct: 102 RQDASARL 109

[Close]

BLAST of PI0007937 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
          MSP+ IMGT+   S EGKT  +  KRKRGGQ++E AEIIRNA +YAN+QLK IAEW NV+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVR 60

Query: 61 RQDGSA 67
           Q+ SA
Sbjct: 61 HQEASA 66

[Close]

BLAST of PI0007937 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-12
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           M PD IMGTR  RS E +TG S SKRK+GGQ +E+ EIIR+AM+Y N QLKAIAEWSN+ 
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNMP 107

Query: 61  RQD 64
             D
Sbjct: 108 NVD 110

[Close]

BLAST of PI0007937 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           MS   I GTR   + E + G S SK+K+GGQS+ET EIIRN M+YAN+QLKAIAEW NVQ
Sbjct: 42  MSTYYIKGTRFGHTAEDRAGLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQ 101

Query: 61  RQDGS 66
            QD S
Sbjct: 102 CQDAS 106

[Close]

BLAST of PI0007937 vs. ExPASy TrEMBL
Match: A0A5A7UK94 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00180 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           MS + IMGT+  RS +GK   S SKRKRGG + ET  IIRN M++AN+QLKAI EW NVQ
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNVQ 340

Query: 61  RQ 63
           RQ
Sbjct: 341 RQ 342

[Close]

BLAST of PI0007937 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           M  D IMGTR DRS EG+TG S SKRK+GGQ++ET EIIRN M+++N++LKAI EW NVQ
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

Query: 61  RQDGSAIL 69
           RQD SA L
Sbjct: 102 RQDASARL 109

[Close]

BLAST of PI0007937 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1  MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
          MSP+ IMGT+   S EGKT  +  KRKRGGQ++E AEIIRNA +YAN+QLK IAEW NV+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVR 60

Query: 61 RQDGSA 67
           Q+ SA
Sbjct: 61 HQEASA 66

[Close]

BLAST of PI0007937 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.7e-12
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           M PD IMGTR  RS E +TG S SKRK+GGQ +E+ EIIR+AM+Y N QLKAIAEWSN+ 
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNMP 107

Query: 61  RQD 64
             D
Sbjct: 108 NVD 110

[Close]

BLAST of PI0007937 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           MS   I GTR   + E + G S SK+K+GGQS+ET EIIRN M+YAN+QLKAIAEW NVQ
Sbjct: 42  MSTYYIKGTRFGHTAEDRAGLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQ 101

Query: 61  RQDGS 66
            QD S
Sbjct: 102 CQDAS 106

[Close]

BLAST of PI0007937 vs. NCBI nr
Match: KAA0055448.1 (uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK08930.1 uncharacterized protein E5676_scaffold314G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1   MSPDGIMGTRLDRSDEGKTGPSMSKRKRGGQSLETAEIIRNAMKYANNQLKAIAEWSNVQ 60
           MS + IMGT+  RS +GK   S SKRKRGG + ET  IIRN M++AN+QLKAI EW NVQ
Sbjct: 281 MSSNNIMGTQPSRSSKGKNASSKSKRKRGGHTAETVNIIRNEMEFANDQLKAIEEWPNVQ 340

Query: 61  RQ 63
           RQ
Sbjct: 341 RQ 342

The following BLAST results are available for this feature:

BLAST of PI0007937 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V469	1.0e-14	67.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T0C2	2.1e-12	63.64	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7V3C0	4.7e-12	65.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CL79	4.0e-11	63.08	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UK94	5.2e-11	62.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0007937 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060529.1	2.1e-14	67.65	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0036810.1	4.3e-12	63.64	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing...	[more]
KAA0060365.1	9.7e-12	65.08	retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p...	[more]
TYK11924.1	8.2e-11	63.08	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055448.1	1.1e-10	62.90	uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of PI0007937 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007937.1	PI0007937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane