Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAAAGAAAGTTACATCCAAATCTTCTATTGCAAACAACGCTTACACGGGACCTATCAATCGTAGTCGTTCAAAGGGGATCATCGAGGAACATGATCAAGGTTCTGCCATCGCACAGAGCATCCTAAAGCAATTGATGGAGTCTCCTAAAGTTGGGATTTTCATCAAGGAAAACCCCTTGTATGATAACTTTAGTTTTGCCTCTAGTAGATCAAAGAAGGAATCACACCCCGATGTGTTGTCTGTCATGATGGTTGATGTAACGGGTGAGGCTGCCATGGCAAAGATGGAGAGGAAAATCAATTTCCTGATGAAAGTTGTCGAGGAGCGAGATCACGAAATCGCAGCTTTGAGAGAGCAAATACAGACTCGTGAAACTGTTGAGTCAAGTCAAACTCCTATTGTCAAAGCTGGTGACAAAGGGAAGAATGTGGTGCAAGAAAACCAACCACAACAATAA
mRNA sequence
ATGGCGCCAAAGAAAGTTACATCCAAATCTTCTATTGCAAACAACGCTTACACGGGACCTATCAATCGTAGTCGTTCAAAGGGGATCATCGAGGAACATGATCAAGGTTCTGCCATCGCACAGAGCATCCTAAAGCAATTGATGGAGTCTCCTAAAGTTGGGATTTTCATCAAGGAAAACCCCTTGTATGATAACTTTAGTTTTGCCTCTAGTAGATCAAAGAAGGAATCACACCCCGATGTGTTGTCTGTCATGATGGTTGATGTAACGGGTGAGGCTGCCATGGCAAAGATGGAGAGGAAAATCAATTTCCTGATGAAAGTTGTCGAGGAGCGAGATCACGAAATCGCAGCTTTGAGAGAGCAAATACAGACTCGTGAAACTGTTGAGTCAAGTCAAACTCCTATTGTCAAAGCTGGTGACAAAGGGAAGAATGTGGTGCAAGAAAACCAACCACAACAATAA
Coding sequence (CDS)
ATGGCGCCAAAGAAAGTTACATCCAAATCTTCTATTGCAAACAACGCTTACACGGGACCTATCAATCGTAGTCGTTCAAAGGGGATCATCGAGGAACATGATCAAGGTTCTGCCATCGCACAGAGCATCCTAAAGCAATTGATGGAGTCTCCTAAAGTTGGGATTTTCATCAAGGAAAACCCCTTGTATGATAACTTTAGTTTTGCCTCTAGTAGATCAAAGAAGGAATCACACCCCGATGTGTTGTCTGTCATGATGGTTGATGTAACGGGTGAGGCTGCCATGGCAAAGATGGAGAGGAAAATCAATTTCCTGATGAAAGTTGTCGAGGAGCGAGATCACGAAATCGCAGCTTTGAGAGAGCAAATACAGACTCGTGAAACTGTTGAGTCAAGTCAAACTCCTATTGTCAAAGCTGGTGACAAAGGGAAGAATGTGGTGCAAGAAAACCAACCACAACAATAA
Protein sequence
MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKENPLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALREQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ
Homology
BLAST of PI0007683 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 122/154 (79.22%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A+NAYTGPI RSRSKGI +E DQGS +AQSILKQLMES K GI IKEN
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSNVAQSILKQLMESLKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDN +SS+SKKE+HPDV+SVMM D+T EAAMA+MERKINFLMK VEERDHEI ALR
Sbjct: 61 PLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TRET ESSQTPIVKA DKGKNVVQENQPQQ
Sbjct: 121 EQMRTRETAESSQTPIVKATDKGKNVVQENQPQQ 154
BLAST of PI0007683 vs. ExPASy TrEMBL
Match:
A0A5D3CD35 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00070 PE=4 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 5.3e-57
Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A++AYTGPI S SKGI +E DQGS +AQSILKQLMESPKVGI IKEN
Sbjct: 1 MASKKTASNSSVASDAYTGPITLSHSKGITQEQDQGSNVAQSILKQLMESPKVGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDNF +ASS+SKKE+HPDV+ VMM D+T EAAMAKME+KINFLMK +EE DHEI ALR
Sbjct: 61 PLYDNFDYASSKSKKEAHPDVMFVMMADITAEAAMAKMEKKINFLMKAMEEGDHEITALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TRET ESSQTP+VKA DKGKNVVQ+NQPQQ
Sbjct: 121 EQMRTRETAESSQTPVVKATDKGKNVVQKNQPQQ 154
BLAST of PI0007683 vs. ExPASy TrEMBL
Match:
A0A5D3BDK1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002000 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 118/154 (76.62%), Postives = 136/154 (88.31%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A++AYTGPI R+RSKGII+E DQGS IAQSILKQLMESPK GI IKEN
Sbjct: 1 MASKKAASNSSVASDAYTGPITRNRSKGIIQEQDQGSNIAQSILKQLMESPKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDN + AS++SKKE+HPDV+SV+M D+T EAAMA+MERKINFLMK VEERDHEI ALR
Sbjct: 61 PLYDNSNSASTKSKKEAHPDVMSVIMTDITAEAAMAEMERKINFLMKGVEERDHEITALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TR+T ES+QTP+VKA DKGKN VQENQPQQ
Sbjct: 121 EQMRTRKTAESNQTPVVKATDKGKNAVQENQPQQ 154
BLAST of PI0007683 vs. ExPASy TrEMBL
Match:
A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 5.9e-56
Identity = 118/154 (76.62%), Postives = 133/154 (86.36%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KKV S S +A++AYTGPI RSRSKGII+E DQ S + QSILKQLMESPK GI IK+N
Sbjct: 1 MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVVQSILKQLMESPKAGIVIKKN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDN ASS SKK++HPDV+SVMM D+T EAAMA+ME+KINFLMK VEERDHEI ALR
Sbjct: 61 PLYDNSDLASSMSKKKAHPDVMSVMMADITVEAAMAEMEKKINFLMKAVEERDHEITALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TRET ESSQTP+VKA DKGKNVVQENQPQQ
Sbjct: 121 EQMRTRETAESSQTPVVKATDKGKNVVQENQPQQ 154
BLAST of PI0007683 vs. ExPASy TrEMBL
Match:
A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 6.5e-55
Identity = 117/154 (75.97%), Postives = 131/154 (85.06%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S+SS+A++ YTGPI R+RSKGI +E DQGS + QSILKQLMESPK I IKEN
Sbjct: 29 MASKKAASRSSVASDGYTGPITRNRSKGITQEQDQGSDVPQSILKQLMESPKAVIVIKEN 88
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
LYDN ASS+SKK+ HPDV+SVMM D+T EA MA+MERKINFLMKVVEERDHEI ALR
Sbjct: 89 SLYDNSDSASSKSKKKEHPDVMSVMMTDITAEAVMAEMERKINFLMKVVEERDHEITALR 148
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ+QTRETVESSQT +VKA DKGKNVVQENQPQQ
Sbjct: 149 EQMQTRETVESSQTSVVKATDKGKNVVQENQPQQ 182
BLAST of PI0007683 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 122/154 (79.22%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A+NAYTGPI RSRSKGI +E DQGS +AQSILKQLMES K GI IKEN
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSNVAQSILKQLMESLKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDN +SS+SKKE+HPDV+SVMM D+T EAAMA+MERKINFLMK VEERDHEI ALR
Sbjct: 61 PLYDNSDSSSSKSKKETHPDVMSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TRET ESSQTPIVKA DKGKNVVQENQPQQ
Sbjct: 121 EQMRTRETAESSQTPIVKATDKGKNVVQENQPQQ 154
BLAST of PI0007683 vs. NCBI nr
Match:
TYK09751.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A++AYTGPI S SKGI +E DQGS +AQSILKQLMESPKVGI IKEN
Sbjct: 1 MASKKTASNSSVASDAYTGPITLSHSKGITQEQDQGSNVAQSILKQLMESPKVGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDNF +ASS+SKKE+HPDV+ VMM D+T EAAMAKME+KINFLMK +EE DHEI ALR
Sbjct: 61 PLYDNFDYASSKSKKEAHPDVMFVMMADITAEAAMAKMEKKINFLMKAMEEGDHEITALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TRET ESSQTP+VKA DKGKNVVQ+NQPQQ
Sbjct: 121 EQMRTRETAESSQTPVVKATDKGKNVVQKNQPQQ 154
BLAST of PI0007683 vs. NCBI nr
Match:
KAA0065806.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ96545.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 118/154 (76.62%), Postives = 136/154 (88.31%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK S SS+A++AYTGPI R+RSKGII+E DQGS IAQSILKQLMESPK GI IKEN
Sbjct: 1 MASKKAASNSSVASDAYTGPITRNRSKGIIQEQDQGSNIAQSILKQLMESPKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLYDN + AS++SKKE+HPDV+SV+M D+T EAAMA+MERKINFLMK VEERDHEI ALR
Sbjct: 61 PLYDNSNSASTKSKKEAHPDVMSVIMTDITAEAAMAEMERKINFLMKGVEERDHEITALR 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ++TR+T ES+QTP+VKA DKGKN VQENQPQQ
Sbjct: 121 EQMRTRKTAESNQTPVVKATDKGKNAVQENQPQQ 154
BLAST of PI0007683 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 227.6 bits (579), Expect = 7.1e-56
Identity = 120/154 (77.92%), Postives = 133/154 (86.36%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK SKSS A++ YTGPI RSRSKGII+ DQGSAIAQSILKQLMESPK GI IKEN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLY+++ ASSRS KE+HPDV+SVMM DV E AMA+MERKIN LMKVV+ERDHEIAAL+
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALK 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ+QTRET ESSQTP+VK DKGKNVVQENQPQQ
Sbjct: 121 EQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154
BLAST of PI0007683 vs. NCBI nr
Match:
XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])
HSP 1 Score: 227.6 bits (579), Expect = 7.1e-56
Identity = 120/154 (77.92%), Postives = 133/154 (86.36%), Query Frame = 0
Query: 1 MAPKKVTSKSSIANNAYTGPINRSRSKGIIEEHDQGSAIAQSILKQLMESPKVGIFIKEN 60
MA KK SKSS A++ YTGPI RSRSKGII+ DQGSAIAQSILKQLMESPK GI IKEN
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQGSAIAQSILKQLMESPKAGIVIKEN 60
Query: 61 PLYDNFSFASSRSKKESHPDVLSVMMVDVTGEAAMAKMERKINFLMKVVEERDHEIAALR 120
PLY+++ ASSRS KE+HPDV+SVMM DV E AMA+MERKIN LMKVV+ERDHEIAAL+
Sbjct: 61 PLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALK 120
Query: 121 EQIQTRETVESSQTPIVKAGDKGKNVVQENQPQQ 155
EQ+QTRET ESSQTP+VK DKGKNVVQENQPQQ
Sbjct: 121 EQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BY54 | 1.8e-57 | 79.22 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3CD35 | 5.3e-57 | 76.62 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BDK1 | 1.2e-56 | 76.62 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7UF60 | 5.9e-56 | 76.62 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7VCU1 | 6.5e-55 | 75.97 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061113.1 | 3.8e-57 | 79.22 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
| TYK09751.1 | 1.1e-56 | 76.62 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0065806.1 | 2.5e-56 | 76.62 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ96545.1 ty3-gyp... | [more] |
| XP_031739134.1 | 7.1e-56 | 77.92 | uncharacterized protein LOC116402863 [Cucumis sativus] | [more] |
| XP_031742032.1 | 7.1e-56 | 77.92 | uncharacterized protein LOC116404025 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
