PI0007665 (gene) Melon (PI 482460) v1

Overview
NamePI0007665
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionProtein TIC 214
Locationtig00003741: 105004 .. 105219 (-)
RNA-Seq ExpressionPI0007665
SyntenyPI0007665
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Protein sequence

MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHIDLLCASASSIG
Homology
[Close]
BLAST of PI0007665 vs. ExPASy TrEMBL
Match: A0A2Z7CD92 (Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-32
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71

[Close]
BLAST of PI0007665 vs. ExPASy TrEMBL
Match: A0A650F2E1 (Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-32
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDN FGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNN FYYGTAHDVHI
Sbjct: 14 MHEDNYFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNWFYYGTAHDVHI 73

Query: 61 DLLCASASSIG 72
          DLLCA ASSIG
Sbjct: 74 DLLCAFASSIG 84

[Close]
BLAST of PI0007665 vs. ExPASy TrEMBL
Match: A0A200QRC7 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-31
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE  ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71

[Close]
BLAST of PI0007665 vs. ExPASy TrEMBL
Match: A0A410PAD6 (Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREE ISNN FY GTAHD
Sbjct: 8  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREEGISNNWFYCGTAHD 67

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASASSIG
Sbjct: 68 VHIDLLCASASSIG 81

[Close]
BLAST of PI0007665 vs. ExPASy TrEMBL
Match: A0A650GBS0 (Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.4e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREESISNN FY GTAHD
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74

[Close]
BLAST of PI0007665 vs. NCBI nr
Match: KZV45020.1 (membrane protein ycf1 [Dorcoceras hygrometricum])

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-32
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWIS+HILHRALLSLPSPSSGYGRRNREE ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISEHILHRALLSLPSPSSGYGRRNREEGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCASASSIG
Sbjct: 61 DLLCASASSIG 71

[Close]
BLAST of PI0007665 vs. NCBI nr
Match: YP_009724465.1 (hypothetical chloroplast RF19 [Senegalia senegal] >QGT77101.1 hypothetical chloroplast RF19 [Senegalia senegal])

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 68/71 (95.77%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDN FGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNN FYYGTAHDVHI
Sbjct: 14 MHEDNYFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNWFYYGTAHDVHI 73

Query: 61 DLLCASASSIG 72
          DLLCA ASSIG
Sbjct: 74 DLLCAFASSIG 84

[Close]
BLAST of PI0007665 vs. NCBI nr
Match: OVA13011.1 (hypothetical protein BVC80_8945g12 [Macleaya cordata])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-31
Identity = 67/71 (94.37%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHI 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRE  ISNN FYYGTAHDVHI
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNREGGISNNWFYYGTAHDVHI 60

Query: 61 DLLCASASSIG 72
          DLLCAS SSIG
Sbjct: 61 DLLCASPSSIG 71

[Close]
BLAST of PI0007665 vs. NCBI nr
Match: YP_009561670.1 (hypothetical chloroplast RF19 [Commiphora gileadensis] >QAT19758.1 hypothetical chloroplast RF19 [Commiphora gileadensis])

HSP 1 Score: 139.8 bits (351), Expect = 9.0e-30
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREE ISNN FY GTAHD
Sbjct: 8  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREEGISNNWFYCGTAHD 67

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASASSIG
Sbjct: 68 VHIDLLCASASSIG 81

[Close]
BLAST of PI0007665 vs. NCBI nr
Match: QGW48450.1 (hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphanus sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG---RRNREESISNNRFYYGTAHD 60
          MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYG   RRNREESISNN FY GTAHD
Sbjct: 1  MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRRRRNREESISNNWFYCGTAHD 60

Query: 61 VHIDLLCASASSIG 72
          VHIDLLCASA SIG
Sbjct: 61 VHIDLLCASAFSIG 74

The following BLAST results are available for this feature:
BLAST of PI0007665 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007665 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z7CD922.7e-3295.77Membrane protein ycf1 OS=Dorcoceras hygrometricum OX=472368 GN=F511_24658 PE=4 S... [more]
A0A650F2E18.0e-3295.77Hypothetical chloroplast RF19 OS=Senegalia senegal OX=138043 GN=ycf1 PE=4 SV=1[more]
A0A200QRC72.3e-3194.37Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_8945g12 PE=4 SV=1[more]
A0A410PAD64.4e-3091.89Protein TIC 214 OS=Commiphora gileadensis OX=1700993 GN=ycf1 PE=3 SV=1[more]
A0A650GBS07.4e-3091.89Uncharacterized protein OS=Raphanus sativus OX=3726 GN=orf74e PE=4 SV=1[more]
BLAST of PI0007665 vs. NCBI nr
Match NameE-valueIdentityDescription
KZV45020.15.6e-3295.77membrane protein ycf1 [Dorcoceras hygrometricum][more]
YP_009724465.11.6e-3195.77hypothetical chloroplast RF19 [Senegalia senegal] >QGT77101.1 hypothetical chlor... [more]
OVA13011.14.8e-3194.37hypothetical protein BVC80_8945g12 [Macleaya cordata][more]
YP_009561670.19.0e-3091.89hypothetical chloroplast RF19 [Commiphora gileadensis] >QAT19758.1 hypothetical ... [more]
QGW48450.11.5e-2991.89hypothetical protein [Raphanus sativus] >QGW48605.1 hypothetical protein [Raphan... [more]
BLAST of PI0007665 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007665.1PI0007665.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion