PI0007656 (gene) Melon (PI 482460) v1

Overview
NamePI0007656
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr05: 9273121 .. 9273798 (-)
RNA-Seq ExpressionPI0007656
SyntenyPI0007656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTCGAACATGCGTGGTGGTGGTGATGATAGAGAAATTCGTTCCATTTTCGTTGCCTTTGCGTCGCGGGGTTCAAGTCAAAACCCGTTAGGCGGTGCGGGGTCTTAAGTCTTGAACTCTAATTTCTTCACCTACTTTTTAAACCCATTTTTTCCCCTTTTCCCTCTAGCATTCGGAGTTTAATTAGAGTTTTGAAATTGAAAAAGAAAAGAAAAAAGAAATTGGGGGCAAGGCAAACTAGCTCAGCCAGGTTCAAATTGAAAAATAAAAAAAGAAAAGGAAAATTTAAAGAAAAATAAGAAAACGAGACAAAGAAAAGAAAGAAGAAAAGTAGCAAACATTTCTTTGGTTTCTTCCTCTTCCTCCATCTTCCTGCAGTTTCATCTTTTCTGCTGCATCCCTCTCGATCTCTCCCTCTTTCTTTCACCTCCGGACACCACACACCGCACCGCCAGGCCCCAGCCCTCCATTTCTGAGCTACCGGTTGCTTTGTTTCTTCCTTTTCGGCAACAGCGTTAAGCCCCACCTGGTGGTGGTTCTTGATCTGCCTCACCACGAGCTTCACCCTCGCCTTCTCAGCTAACCGGCTGTCGCTTCATCCAATCAGTTGCCAACAGATCATTGCCGTGTATTTCCCCTCTGTTCGACGAGTATCAGTACTCACGCACTTGA

mRNA sequence

ATGGAGGATTCGAACATGCGTGGTGGTGGTGATGATAGAGAAATTCGTTCCATTTTCTTTCATCTTTTCTGCTGCATCCCTCTCGATCTCTCCCTCTTTCTTTCACCTCCGGACACCACACACCGCACCGCCAGGCCCCAGCCCTCCATTTCTGAGCTACCGGTTGCTTTGTTTCTTCCTTTTCGGCAACAGCCTTCACCCTCGCCTTCTCAGCTAACCGGCTGTCGCTTCATCCAATCAGTTGCCAACAGATCATTGCCGTGTATTTCCCCTCTGTTCGACGAGTATCAGTACTCACGCACTTGA

Coding sequence (CDS)

ATGGAGGATTCGAACATGCGTGGTGGTGGTGATGATAGAGAAATTCGTTCCATTTTCTTTCATCTTTTCTGCTGCATCCCTCTCGATCTCTCCCTCTTTCTTTCACCTCCGGACACCACACACCGCACCGCCAGGCCCCAGCCCTCCATTTCTGAGCTACCGGTTGCTTTGTTTCTTCCTTTTCGGCAACAGCCTTCACCCTCGCCTTCTCAGCTAACCGGCTGTCGCTTCATCCAATCAGTTGCCAACAGATCATTGCCGTGTATTTCCCCTCTGTTCGACGAGTATCAGTACTCACGCACTTGA

Protein sequence

MEDSNMRGGGDDREIRSIFFHLFCCIPLDLSLFLSPPDTTHRTARPQPSISELPVALFLPFRQQPSPSPSQLTGCRFIQSVANRSLPCISPLFDEYQYSRT
Homology
[Close]
BLAST of PI0007656 vs. ExPASy TrEMBL
Match: A0A0A0LID0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150010 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 61/113 (53.98%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 1   MEDSNMRGGGDDREIRSIFFHLFCCIPLDLSLFLSPPDTTHRTARPQPSIS--------- 60
           M+D++M GG      R + FHLFCCIPLDLS  LSPPDT    A P P +S         
Sbjct: 10  MKDTDMHGGVHS---RCLCFHLFCCIPLDLSFSLSPPDTAPPGASP-PFLSYRLLCFFLF 69

Query: 61  ------ELPVALFLPFRQQPSPSPSQLTGCRFIQSVANRSLPCISPLFDEYQY 99
                  L V L LP   + SP+PS+LTGC FIQSVANRSL CISPLFDEY Y
Sbjct: 70  GNSVKPSLVVVLDLP-HPRASPTPSRLTGCHFIQSVANRSLTCISPLFDEYHY 117

[Close]
BLAST of PI0007656 vs. NCBI nr
Match: KAE8651780.1 (hypothetical protein Csa_006018, partial [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14
Identity = 52/90 (57.78%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 20 FHLFCCIPLDLSLFLSPPDTTHRTARPQPSIS---------------ELPVALFLPFRQQ 79
          FHLFCCIPLDLS  LSPPDT    A P P +S                L V L LP   +
Sbjct: 1  FHLFCCIPLDLSFSLSPPDTAPPGASP-PFLSYRLLCFFLFGNSVKPSLVVVLDLP-HPR 60

Query: 80 PSPSPSQLTGCRFIQSVANRSLPCISPLFD 95
           SP+PS+LTGC FIQSVANRSL CISPLFD
Sbjct: 61 ASPTPSRLTGCHFIQSVANRSLTCISPLFD 88

The following BLAST results are available for this feature:
BLAST of PI0007656 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007656 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LID01.1e-1853.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G150010 PE=4 SV=1[more]
BLAST of PI0007656 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651780.14.4e-1457.78hypothetical protein Csa_006018, partial [Cucumis sativus][more]
BLAST of PI0007656 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007656.1PI0007656.1mRNA