PI0007651 (gene) Melon (PI 482460) v1

Overview
NamePI0007651
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr04: 12646567 .. 12647877 (-)
RNA-Seq ExpressionPI0007651
SyntenyPI0007651
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCACAACTAAGACATGCAAACGATCATCTACTACCTGGACGAGCACAAGGTTCACGGTATGCTATTTTATTTTAATTTAGATCACACAATAGTTTTAATAATAAATGAGTGATATAATTAATTCAAAACCTAAAATATTAGTTTATTAATACAGAAGGAAAGACCAATTTTGTGTAACAAGATCAGCTACTCATGTAGTTAGTCAATATAGATACATGTTTGATCTTCTTCAACGTGATCAGGTACATCAATACTAACGCTTTAATTATTTTATACATTAGTATACATATATTTAGTGATTTTTAATGTAATGCGTGATATTTCAGATTATTTGGGAGCCTTACAAAAATGTAATACATAATTTACCCAATTTCTGTACGAATGGTCAACATATATGGCGGACCATCAGTCCTCTCATATGTTTTCATATTGGTGAATGGCATTATCTTGATAAAGTGATCAGACAATTCGGTTTTAAACAAGATGTCCCATCAGAATGCAATACGGAGCCAATTCTGCACAATATTGACTTGAGAACCAGAGATTGGTCAGACAAGGTTGCACATTTGGTCGTGCGATGACAATCTCGTAGAAGATTCATTGCCACTGGAGCTTCGATTCAACAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCTGTGGGTCATCTGGTACATATTTAAATATTGAATAATTTTTTTAATTCTTTACTCAATTAACTATTCTCTTATTTTTTTTCAATTCACAGAGATCGAACAACAGAAGACTTTGTGATGTTGCAGATGATCCGCAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAAGAGATACATTATATGTACGATGTACTTATTGATACATTATATGTACGATGTACTTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGCTTTTGGAGCAGGATATTGTGATTCTGAGGTCGATATAGGATATAATGACTCAGGGGTCGATCCATCGTCTTCATACATGGATGCGGACCAGCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAAACATTCCAGTTCCACGAGAGTACCAACAAGAACCAGAGAATCAAGAAGAGCTAG

mRNA sequence

ATGGCTCCACAACTAAGACATGCAAACGATCATCTACTACCTGGACGAGCACAAGGTTCACGAAGATTCATTGCCACTGGAGCTTCGATTCAACAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCTGTGGGTCATCTGAGATCGAACAACAGAAGACTTTGTGATGTTGCAGATGATCCGCAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAAGAGATACATTATATGTACGATTTAACAGGGGACGTGTTCGAGTGGAAGAAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGCTTTTGGAGCAGGATATTGTGATTCTGAGGTCGATATAGGATATAATGACTCAGGGGTCGATCCATCGTCTTCATACATGGATGCGGACCAGCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAAACATTCCAGTTCCACGAGAGTACCAACAAGAACCAGAGAATCAAGAAGAGCTAG

Coding sequence (CDS)

ATGGCTCCACAACTAAGACATGCAAACGATCATCTACTACCTGGACGAGCACAAGGTTCACGAAGATTCATTGCCACTGGAGCTTCGATTCAACAATTTGATCAGGATGTGACTCAAGAATACATCCACTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCTGTGGGTCATCTGAGATCGAACAACAGAAGACTTTGTGATGTTGCAGATGATCCGCAACAAGTTCTTGATATATGTAATAATAATGAGAGGTACATGGAAGAGATACATTATATGTACGATTTAACAGGGGACGTGTTCGAGTGGAAGAAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCTAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGCTTTTGGAGCAGGATATTGTGATTCTGAGGTCGATATAGGATATAATGACTCAGGGGTCGATCCATCGTCTTCATACATGGATGCGGACCAGCAACTTCTTACATGCATGGACATGGACACGGACGAGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAAACATTCCAGTTCCACGAGAGTACCAACAAGAACCAGAGAATCAAGAAGAGCTAG

Protein sequence

MAPQLRHANDHLLPGRAQGSRRFIATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDICNNNERYMEEIHYMYDLTGDVFEWKKLDEVYHNVEEVPLVTQTQSQTGYGSPMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMDADQQLLTCMDMDTDEAAENITNICTMKHLQTFQFHESTNKNQRIKKS
Homology
BLAST of PI0007651 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.4e-57
Identity = 134/236 (56.78%), Postives = 143/236 (60.59%), Query Frame = 0

Query: 1   MAPQLRHANDHLLPGRAQGSR---RFIAT------------------------------- 60
           +APQL HAN+HLLPGRA GSR   +F  T                               
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  -------------------------GASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVG 120
                                    G SIQQFD DVTQEYIHWYNNITRLYITRP AAVG
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

Query: 121 HLRSNNRRLCDVADDPQQVLDICNNNERYMEEIHYMYDLT--------GDV-FEWKKLDE 169
           HLRSNN RL DVADDPQQVL+ICNNN+RYMEEIH MYDL+        G V  E  +LDE
Sbjct: 147 HLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDE 206

BLAST of PI0007651 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.4e-55
Identity = 116/151 (76.82%), Postives = 122/151 (80.79%), Query Frame = 0

Query: 27  GASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDICNN 86
           G SIQQFD DVTQEYIHWYNNITRLYITRPGAAVGHLRSNN RL DVADDPQQVL+ICNN
Sbjct: 103 GVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNN 162

Query: 87  NERYMEEIHYMYDLT--------GDV-FEWKKLDEVYHNVEEVPLVTQTQSQTGYGSPMM 146
           N+RYMEEIH MYDL+        G V  E  +LDEVYHNVEEVP  TQTQSQTGYGSPM 
Sbjct: 163 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMT 222

Query: 147 MMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           MM  FGAGY DSEV  GY D+G+ PSS YMD
Sbjct: 223 MMPTFGAGYYDSEVGTGYYDAGISPSSLYMD 253

BLAST of PI0007651 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 5.9e-54
Identity = 115/157 (73.25%), Postives = 122/157 (77.71%), Query Frame = 0

Query: 21  RRFIATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQV 80
           RRF+    SIQQFD DVTQEYIH YNNITRLYITRPGA VGHLRSNN RL DV +DPQQV
Sbjct: 274 RRFMTIEVSIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQV 333

Query: 81  LDICNNNERYMEEIHYMYDLT-------GDVF--EWKKLDEVYHNVEEVPLVTQTQSQTG 140
           LDICNNNERYME+IH +YDL         + F  E  +LDEVYHNVEEVP  TQTQSQTG
Sbjct: 334 LDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTG 393

Query: 141 YGSPMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           YGSPM MM  FGAGYCDSEV IGY D+ V P SSYMD
Sbjct: 394 YGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMD 430

BLAST of PI0007651 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.7e-51
Identity = 113/154 (73.38%), Postives = 120/154 (77.92%), Query Frame = 0

Query: 24  IATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDI 83
           +A   SIQQFD+DVTQEYIHWY+NITRLYITRPGAAVG  RSNN RL DVADD QQ LDI
Sbjct: 1   MAIRVSIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDI 60

Query: 84  CNNNERYMEEIHYMYDL--------TGDV-FEWKKLDEVYHNVEEVPLVTQTQSQTGYGS 143
           CNNNERYMEEIH MYDL         G V  E  +LD+VYHNVEEVP  TQTQSQTGYGS
Sbjct: 61  CNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGS 120

Query: 144 PMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           PM MM  F AGYCD EV IGY D+GV PSSSY+D
Sbjct: 121 PMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVD 152

BLAST of PI0007651 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 8.8e-50
Identity = 120/201 (59.70%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 24  IATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDI 83
           +A G SIQQFD DVTQEYIHWYNNITRLYITR GA    +RSNN RL DVADDPQQVLDI
Sbjct: 1   MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRLGA----VRSNNARLRDVADDPQQVLDI 60

Query: 84  CNNNERYMEEIHYMYDLT---------GDVFEWKKLDEVYHNVEEVPLVTQTQSQTGYGS 143
           CNNN RYMEEIH MY+++             E  +LDEVYHNVEEVP  TQTQSQT YGS
Sbjct: 61  CNNNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGS 120

Query: 144 PMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMDADQQLLTCMDMDTDEAAENITNICTM 203
            M MM  FG G+             +    ++M    QLLTC  MDTD A  NI NIC M
Sbjct: 121 LMTMMPTFGVGFVILRSVEDIMMQSIHRLHTWMSV-HQLLTC--MDTDVAMGNIMNICIM 180

Query: 204 KHLQTFQFHESTNKNQRIKKS 216
           KHLQ +Q  +STNKNQR K++
Sbjct: 181 KHLQMYQIDKSTNKNQRTKRT 194

BLAST of PI0007651 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-56
Identity = 134/236 (56.78%), Postives = 143/236 (60.59%), Query Frame = 0

Query: 1   MAPQLRHANDHLLPGRAQGSR---RFIAT------------------------------- 60
           +APQL HAN+HLLPGRA GSR   +F  T                               
Sbjct: 27  IAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYRYMFDLLQRDQIIWEPYKNVI 86

Query: 61  -------------------------GASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVG 120
                                    G SIQQFD DVTQEYIHWYNNITRLYITRP AAVG
Sbjct: 87  GNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVG 146

Query: 121 HLRSNNRRLCDVADDPQQVLDICNNNERYMEEIHYMYDLT--------GDV-FEWKKLDE 169
           HLRSNN RL DVADDPQQVL+ICNNN+RYMEEIH MYDL+        G V  E  +LDE
Sbjct: 147 HLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDE 206

BLAST of PI0007651 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-55
Identity = 116/151 (76.82%), Postives = 122/151 (80.79%), Query Frame = 0

Query: 27  GASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDICNN 86
           G SIQQFD DVTQEYIHWYNNITRLYITRPGAAVGHLRSNN RL DVADDPQQVL+ICNN
Sbjct: 103 GVSIQQFDIDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNN 162

Query: 87  NERYMEEIHYMYDLT--------GDV-FEWKKLDEVYHNVEEVPLVTQTQSQTGYGSPMM 146
           N+RYMEEIH MYDL+        G V  E  +LDEVYHNVEEVP  TQTQSQTGYGSPM 
Sbjct: 163 NKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMT 222

Query: 147 MMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           MM  FGAGY DSEV  GY D+G+ PSS YMD
Sbjct: 223 MMPTFGAGYYDSEVGTGYYDAGISPSSLYMD 253

BLAST of PI0007651 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-53
Identity = 115/157 (73.25%), Postives = 122/157 (77.71%), Query Frame = 0

Query: 21  RRFIATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQV 80
           RRF+    SIQQFD DVTQEYIH YNNITRLYITRPGA VGHLRSNN RL DV +DPQQV
Sbjct: 274 RRFMTIEVSIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQV 333

Query: 81  LDICNNNERYMEEIHYMYDLT-------GDVF--EWKKLDEVYHNVEEVPLVTQTQSQTG 140
           LDICNNNERYME+IH +YDL         + F  E  +LDEVYHNVEEVP  TQTQSQTG
Sbjct: 334 LDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTG 393

Query: 141 YGSPMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           YGSPM MM  FGAGYCDSEV IGY D+ V P SSYMD
Sbjct: 394 YGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMD 430

BLAST of PI0007651 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 9.6e-51
Identity = 113/154 (73.38%), Postives = 120/154 (77.92%), Query Frame = 0

Query: 24  IATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDI 83
           +A   SIQQFD+DVTQEYIHWY+NITRLYITRPGAAVG  RSNN RL DVADD QQ LDI
Sbjct: 1   MAIRVSIQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDI 60

Query: 84  CNNNERYMEEIHYMYDL--------TGDV-FEWKKLDEVYHNVEEVPLVTQTQSQTGYGS 143
           CNNNERYMEEIH MYDL         G V  E  +LD+VYHNVEEVP  TQTQSQTGYGS
Sbjct: 61  CNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGS 120

Query: 144 PMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMD 169
           PM MM  F AGYCD EV IGY D+GV PSSSY+D
Sbjct: 121 PMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVD 152

BLAST of PI0007651 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-49
Identity = 120/201 (59.70%), Postives = 134/201 (66.67%), Query Frame = 0

Query: 24  IATGASIQQFDQDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNRRLCDVADDPQQVLDI 83
           +A G SIQQFD DVTQEYIHWYNNITRLYITR GA    +RSNN RL DVADDPQQVLDI
Sbjct: 1   MAIGVSIQQFDMDVTQEYIHWYNNITRLYITRLGA----VRSNNARLRDVADDPQQVLDI 60

Query: 84  CNNNERYMEEIHYMYDLT---------GDVFEWKKLDEVYHNVEEVPLVTQTQSQTGYGS 143
           CNNN RYMEEIH MY+++             E  +LDEVYHNVEEVP  TQTQSQT YGS
Sbjct: 61  CNNNLRYMEEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGS 120

Query: 144 PMMMMSAFGAGYCDSEVDIGYNDSGVDPSSSYMDADQQLLTCMDMDTDEAAENITNICTM 203
            M MM  FG G+             +    ++M    QLLTC  MDTD A  NI NIC M
Sbjct: 121 LMTMMPTFGVGFVILRSVEDIMMQSIHRLHTWMSV-HQLLTC--MDTDVAMGNIMNICIM 180

Query: 204 KHLQTFQFHESTNKNQRIKKS 216
           KHLQ +Q  +STNKNQR K++
Sbjct: 181 KHLQMYQIDKSTNKNQRTKRT 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBF87.4e-5756.78Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH232.4e-5576.82Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DJV75.9e-5473.25Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7V3424.7e-5173.38Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3C2V98.8e-5059.70Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
KAA0038951.11.5e-5656.78mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.14.9e-5576.82mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK23842.11.2e-5373.25serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0062642.19.6e-5173.38mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0040602.11.8e-4959.70mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007651.1PI0007651.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development