PI0007532 (gene) Melon (PI 482460) v1

Overview


Name	PI0007532
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S ribosomal protein L44
Location	chr04: 11393670 .. 11395289 (+)
RNA-Seq Expression	PI0007532
Synteny	PI0007532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGCGAATAGCTGTAGTTACGTGTTTTTTGTTTTTTTCGTAGTATCACTTGATCTAGGACTTTGTTAGAAGTTAACTGGTTTATCTGTTGTACTCGAGCTTAGTTTGGCTTAGTTAGCGAGGTGAGAACGTAAGTTCTATGGGGCTAGTTTTAGAATAAGCCATCTGAATCATCTGGCAGCTTGTGCGTGATCATGTTGATTTGGAAGTATTTTTGCTGCACAGACTGTAAGAGAATGAATTGAAGGATTACTGATATTTGTAGCTTATGGAAACTGGGCCCTGGATTTAGGATTTGCACGATTGCTGCATACAAGTGAAATCTGTAGTGTCACTGAACTCTTACTGTTCTTTTGGATAAGAAACAATTTTATTGATGTTTGAAATTACCAAAGGGGAACCCCAATAAGAGTAATTACAGAAGGCTTCTCCAATAAGAGAGGAAGGAGAAATTACTAAAGTGATGGAAGAGAGGGGATACCACTGAATTTTTGAACGCTTTAGTATTGAGTGGGATTGGGATGTTTCATCCAAAAATTGCTTAAAAGAATGAAATTATCACGAGGTAAACATTGCACATAGAGTGGATTATAAATTCTGGAGCTTTGATTATAGTAAGTTTGTTGTTGTGCCCCTCTGAAGGAAATTTTAAACCATGGATTCAAAAGGCAGTAGTGGGATTGTAGTATCTATGTGTTTTTTTGTCATTACAACTTGTAGCGTTGTGGTTTAAGATTTGATTTGTTGATATGGTTATGGCAAACAGGTGAACGTTCCCAAGACCAAGAAAACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAATTGTCTCACATCCGGTCAAATTCTCACTTTCTCCTTTTCTGTGTGCTGTCTAGATTAGAACTGAACTGAAACTCCTGAATCTCACAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGTCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTCAGAATGCAAAGTATTCTGTTTTTTTTTCTTTTATGATCTCTCTCAATGAAGTATCTTGATAATTTTGCAAAAAATCTTTCAAGCATATAGATCCATTCTCGTACTACCTATGGCTGTTGGTTCAAATAGTGTTAATATGTTTTCCTCCCCGTAAAGTAAATACCCATTGCTATACTAGTGAAGACAGTTCATATTTGATACCTGGTTTTAAATGCCTTTACCTTTGGGGTAGTGTTGTTTTATCCATTCCAGTACTTGAGTACAGTTTCGTAATGAGTGACCATCGAATTGGTACATGCTGGGATAATTGCAATATTTGAAGTAATTGTTTGCTCTTTAAGACATGCAAGTCCAAATGAGAAACCTAATTGTTAGATATTATCTGGTGGATATTGTGCGGGTTCCTTATCTTCATGTCTTAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG

mRNA sequence

ATGGAGAGGCGAATAGCTGTGAACGTTCCCAAGACCAAGAAAACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGTCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG

Coding sequence (CDS)

ATGGAGAGGCGAATAGCTGTGAACGTTCCCAAGACCAAGAAAACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTTCACAAGAAGGCAAAAACGACCAAGAAGATTGTGTTGAGGCTTCAGTGTCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAG

Protein sequence

MERRIAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF

Homology

[Close]

BLAST of PI0007532 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of PI0007532 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 204.5 bits (519), Expect = 6.1e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of PI0007532 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 110
           AKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of PI0007532 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 110
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of PI0007532 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-42
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 110
           AKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 62  AKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of PI0007532 vs. ExPASy TrEMBL
Match: A0A5D3C196 (60S ribosomal protein L44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00120 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           I VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 9   IVVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 68

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 69  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of PI0007532 vs. ExPASy TrEMBL
Match: A0A7J7DEP2 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00373 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 4   RIAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 63
           +I VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 61  QIMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 120

Query: 64  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 167

[Close]

BLAST of PI0007532 vs. ExPASy TrEMBL
Match: F6HF51 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 6   AVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 65
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 248 SVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 307

Query: 66  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 308 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 352

[Close]

BLAST of PI0007532 vs. ExPASy TrEMBL
Match: A0A1R3H6E5 (Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           + VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 2   LEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 61

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 107

[Close]

BLAST of PI0007532 vs. ExPASy TrEMBL
Match: A0A2G9G523 (60S ribosomal protein L44 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27076 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           + VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 20  LEVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 79

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 80  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 125

[Close]

BLAST of PI0007532 vs. NCBI nr
Match: KAF5744793.1 (hypothetical protein HS088_TW07G00373 [Tripterygium wilfordii])

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 4   RIAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 63
           +I VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 61  QIMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 120

Query: 64  HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 121 HKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 167

[Close]

BLAST of PI0007532 vs. NCBI nr
Match: KAA0052770.1 (60S ribosomal protein L44-like [Cucumis melo var. makuwa] >TYK04186.1 60S ribosomal protein L44-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           I VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 9   IVVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 68

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 69  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 114

[Close]

BLAST of PI0007532 vs. NCBI nr
Match: CBI27145.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 4.0e-53
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           I VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 4   IQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 63

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 64  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 109

[Close]

BLAST of PI0007532 vs. NCBI nr
Match: KAF7152886.1 (hypothetical protein RHSIM_Rhsim01G0066500 [Rhododendron simsii] >KAF7153129.1 hypothetical protein RHSIM_Rhsim01G0065700 [Rhododendron simsii])

HSP 1 Score: 217.6 bits (553), Expect = 5.3e-53
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 5   IAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 64
           + VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH
Sbjct: 14  VQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFH 73

Query: 65  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 74  KKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 119

[Close]

BLAST of PI0007532 vs. NCBI nr
Match: KAG8473375.1 (hypothetical protein CXB51_035498 [Gossypium anomalum])

HSP 1 Score: 217.2 bits (552), Expect = 6.9e-53
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 2   ERRIAVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 61
           E  + VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 16  ESVLQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 75

Query: 62  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 76  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 124

[Close]

BLAST of PI0007532 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of PI0007532 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-53
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 7   VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
           VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67  AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 111
           AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 62  AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of PI0007532 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 7  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 66
          VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 67 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 99
          AKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 62 AKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of PI0007532 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	1.5e-55	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	6.1e-52	93.27	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	3.3e-42	77.67	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	5.7e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	5.7e-42	77.67	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of PI0007532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C196	1.5e-53	99.06	60S ribosomal protein L44-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A7J7DEP2	1.5e-53	98.13	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00373 ...	[more]
F6HF51	3.3e-53	99.05	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02080 PE=3 SV=...	[more]
A0A1R3H6E5	3.3e-53	98.11	Ribosomal protein L44e OS=Corchorus olitorius OX=93759 GN=COLO4_30903 PE=3 SV=1	[more]
A0A2G9G523	3.3e-53	98.11	60S ribosomal protein L44 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27076...	[more]

BLAST of PI0007532 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5744793.1	3.1e-53	98.13	hypothetical protein HS088_TW07G00373 [Tripterygium wilfordii]	[more]
KAA0052770.1	3.1e-53	99.06	60S ribosomal protein L44-like [Cucumis melo var. makuwa] >TYK04186.1 60S riboso...	[more]
CBI27145.3	4.0e-53	99.06	unnamed protein product, partial [Vitis vinifera]	[more]
KAF7152886.1	5.3e-53	98.11	hypothetical protein RHSIM_Rhsim01G0066500 [Rhododendron simsii] >KAF7153129.1 h...	[more]
KAG8473375.1	6.9e-53	96.33	hypothetical protein CXB51_035498 [Gossypium anomalum]	[more]

BLAST of PI0007532 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	4.3e-53	93.27	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	4.3e-53	93.27	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	1.1e-45	92.39	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 24..98 e-value: 8.6E-35 score: 119.1
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 4..110
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 68..79
None	No IPR available	GENE3D	3.10.450.80		coord: 6..110 e-value: 9.7E-51 score: 172.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..53
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 4..110
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 7..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007532.1	PI0007532.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0006412	translation
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009408	response to heat
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding