PI0007515 (gene) Melon (PI 482460) v1

Overview


Name	PI0007515
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	F-box protein
Location	chr02: 21764642 .. 21765594 (-)
RNA-Seq Expression	PI0007515
Synteny	PI0007515

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAATGAATATATTGAACTTCCGGAGATGTCTGATTTTGATGAATATCGTACATTTTACCGTAACAGATTTGGATTTGGTTTTAGCGCTAAGACGAAGACATACAAAGTAGTCCAAGCTTATTGTAACCTAAGAGAATCCAATACTGCATTTTATATTTTCACATTTGGTGGAAACAATAGCGATAAATGGAGACAGCTTTGTTTAGTGCCTCTTGAGGTTCCAGGTCATGGTGTTTATTTTGATGGAGCTATCTATTGGATTGGGATAGATCCGACAAATGGACATCATTACGTTGTATTTCGGTTCGATGTTGAAACTGAGAAAATTGAAACAACGTTTTCTTTTTATAAAGTTGGTCCTTCTACAAATACGAGCATTCAGGTGTTTAATGGTAATGTGTATGCGACTTTTTACTTAGCATATCCACTTCATACCATTGAAGTGTGGAGTATGCAAAATTTAGAAGGGAAAGATAATTCATGGACAAGAGAATTTGTTATTAGTAACATGCCATATTGGATTGTGTCAAATCGTTTGAGTATCAATGTTAAACTTATTGAAAGCTATGAAGATGGAGGTATAGTGTTTTTTATCAATAATAAACATTTTATTTTGTATAATCCAAAGTTTGGAAGGTTCGAGATAATGAGGAGTCGATTTAAGCAATGCCACCCATTTACTTGTAGTTTTTGTATGTTAGATTCCTTCAACTTTGGTTCTCTCCGGAAGATACTGAATGGACAGTAGTAATACTTTGGTTCTCTTCATAAGATACTCAATGGACAATAATAATACTTTGGTTCTCTTCATAAGATATTCAATGGACATAGTAGTACTTTGGTTCTCTTCAGATATTCAGTGGACAGTATTCAGAAGATGCTCAGTGGATAGTAGAAGTATTTTCGTTCTCTTCAGATGATACTCAGTGGACAGTAGTAGATGATTGA

mRNA sequence

ATGACGAATGAATATATTGAACTTCCGGAGATGTCTGATTTTGATGAATATCGTACATTTTACCGTAACAGATTTGGATTTGGTTTTAGCGCTAAGACGAAGACATACAAAGTAGTCCAAGCTTATTGTAACCTAAGAGAATCCAATACTGCATTTTATATTTTCACATTTGGTGGAAACAATAGCGATAAATGGAGACAGCTTTGTTTAGTGCCTCTTGAGGTTCCAGGTCATGGTGTTTATTTTGATGGAGCTATCTATTGGATTGGGATAGATCCGACAAATGGACATCATTACGTTGTATTTCGGTTCGATGTTGAAACTGAGAAAATTGAAACAACGTTTTCTTTTTATAAAGTTGGTCCTTCTACAAATACGAGCATTCAGATATTCAGTGGACAGTATTCAGAAGATGCTCAGTGGATAGTAGAAGTATTTTCGTTCTCTTCAGATGATACTCAGTGGACAGTAGTAGATGATTGA

Coding sequence (CDS)

ATGACGAATGAATATATTGAACTTCCGGAGATGTCTGATTTTGATGAATATCGTACATTTTACCGTAACAGATTTGGATTTGGTTTTAGCGCTAAGACGAAGACATACAAAGTAGTCCAAGCTTATTGTAACCTAAGAGAATCCAATACTGCATTTTATATTTTCACATTTGGTGGAAACAATAGCGATAAATGGAGACAGCTTTGTTTAGTGCCTCTTGAGGTTCCAGGTCATGGTGTTTATTTTGATGGAGCTATCTATTGGATTGGGATAGATCCGACAAATGGACATCATTACGTTGTATTTCGGTTCGATGTTGAAACTGAGAAAATTGAAACAACGTTTTCTTTTTATAAAGTTGGTCCTTCTACAAATACGAGCATTCAGATATTCAGTGGACAGTATTCAGAAGATGCTCAGTGGATAGTAGAAGTATTTTCGTTCTCTTCAGATGATACTCAGTGGACAGTAGTAGATGATTGA

Protein sequence

MTNEYIELPEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLRESNTAFYIFTFGGNNSDKWRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFSFYKVGPSTNTSIQIFSGQYSEDAQWIVEVFSFSSDDTQWTVVDD

Homology

[Close]

BLAST of PI0007515 vs. ExPASy TrEMBL
Match: A0A5A7TCP6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-14
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MTNEYIELPEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQ-AYCNLRESNTAFYIFTFGG 60
           MTNE+ ELPE  +FDE   FY    GFGFS KTK YK+ +  Y +  E      I  FG 
Sbjct: 1   MTNEFFELPE-CEFDESHPFY----GFGFSLKTKQYKLFRVTYDDRYELYCIMEIMRFGD 60

Query: 61  NNSDK--WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFSF 120
            +  K  WR     P+    HG Y +G IYW+G +   G  +V++  DVETE+IE+  + 
Sbjct: 61  RSGTKEEWRHFKCPPISFDNHGAYLNGVIYWVGKE--EGKEHVIYALDVETEQIESV-AV 117

Query: 121 YKVGP 123
            +VGP
Sbjct: 121 LEVGP 117

[Close]

BLAST of PI0007515 vs. ExPASy TrEMBL
Match: A0A0A0KSJ2 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.1e-11
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MTNEYIEL---PEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLRESNTAFYIFTF 60
           MTNE+  L   P++ + ++   FY    GFGF+ KTK YK+ +A  +  +S+    +  F
Sbjct: 144 MTNEFFILSTQPKVKN-EDISCFY----GFGFNLKTKQYKLFKAIHDEEDSHLMMEVMRF 203

Query: 61  GGNNSDK-WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFS 120
           G N   K WR L  +P      GVY +G IYWIG    N    V++  +VETEKIE + +
Sbjct: 204 GKNEETKEWRHLTCLPFVFYCDGVYLNGVIYWIGRQKEN--KSVIYSLNVETEKIE-SIT 263

Query: 121 FYKVGPSTNTS 128
             KV PS NTS
Sbjct: 264 VLKVDPSYNTS 266

[Close]

BLAST of PI0007515 vs. ExPASy TrEMBL
Match: A0A0A0KUJ1 (FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   MTNEYIELPEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLR-ESNTAFYIFTFGG 60
           MTNE++ELP+  ++DE   +Y    GFGF+ KTK YK+ +     R E  +   I  FG 
Sbjct: 63  MTNEFLELPD-REYDESSPYY----GFGFNPKTKQYKLFRVTERDRYEFYSIMEIMRFGD 122

Query: 61  NNSDK--WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFSF 120
            +  K  WR     P+    HG Y +G IYW+G +   G  YV++  DVETE++E     
Sbjct: 123 RSETKEEWRHFKCPPISFDDHGAYLNGVIYWMGKE--KGKAYVIYALDVETEQMELVADL 179

Query: 121 YKVGP 123
            +VGP
Sbjct: 183 -EVGP 179

[Close]

BLAST of PI0007515 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 1   MTNEYIELPEMS-DFDEYRTFYRNRFGFGFSAKTKTYKVV----QAYCNLRESNTAFYIF 60
           MTNE++E+P+   + D +        GFGFS +TK YK+     +   NL++ +    IF
Sbjct: 140 MTNEFMEIPQPEIELDVH------SIGFGFSPRTKQYKLFRTEPEVLENLKKCHYIMEIF 199

Query: 61  TFGGNNSDKWRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTF 120
           TF  N   +WR    +P  V  HG Y +G IYWIG         V++  DV+TE++E T 
Sbjct: 200 TF-DNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEGEAVIYALDVDTEQMECTA 259

Query: 121 SFYKVGPS-TNTSIQIF 132
           +  ++GPS  N SI+IF
Sbjct: 260 TL-EIGPSLKNGSIKIF 268

[Close]

BLAST of PI0007515 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 0


Query: 1   MTNEYIELPEMS-DFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLRESNTAFYIFTFGG 60
           MTNE++++P    D D Y  FY    G GFS  TK YK+ +   N   +++  YI TF  
Sbjct: 147 MTNEFLQVPRHELDGDNY--FY----GLGFSPTTKQYKMFRV--NPNNNSSIMYILTFRR 206

Query: 61  NNS----DKWRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTF 120
           + +    ++WRQL  +P+ +   GVY +G IYW+G      + Y ++  +VETE+IE + 
Sbjct: 207 SETNYKYNQWRQLHSLPILICCDGVYLNGFIYWMGRKQYKENEYTIYALNVETEQIELS- 266

Query: 121 SFYKVGPSTNTSI 129
           +   +GP + +SI
Sbjct: 267 AVLHLGPFSTSSI 270

[Close]

BLAST of PI0007515 vs. NCBI nr
Match: KAA0039401.1 (F-box protein [Cucumis melo var. makuwa] >TYK00589.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MTNEYIELPEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQ-AYCNLRESNTAFYIFTFGG 60
           MTNE+ ELPE  +FDE   FY    GFGFS KTK YK+ +  Y +  E      I  FG 
Sbjct: 1   MTNEFFELPE-CEFDESHPFY----GFGFSLKTKQYKLFRVTYDDRYELYCIMEIMRFGD 60

Query: 61  NNSDK--WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFSF 120
            +  K  WR     P+    HG Y +G IYW+G +   G  +V++  DVETE+IE+  + 
Sbjct: 61  RSGTKEEWRHFKCPPISFDNHGAYLNGVIYWVGKE--EGKEHVIYALDVETEQIESV-AV 117

Query: 121 YKVGP 123
            +VGP
Sbjct: 121 LEVGP 117

[Close]

BLAST of PI0007515 vs. NCBI nr
Match: XP_004141602.1 (F-box protein At3g07870 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-11
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MTNEYIEL---PEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLRESNTAFYIFTF 60
           MTNE+  L   P++ + ++   FY    GFGF+ KTK YK+ +A  +  +S+    +  F
Sbjct: 144 MTNEFFILSTQPKVKN-EDISCFY----GFGFNLKTKQYKLFKAIHDEEDSHLMMEVMRF 203

Query: 61  GGNNSDK-WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFS 120
           G N   K WR L  +P      GVY +G IYWIG    N    V++  +VETEKIE + +
Sbjct: 204 GKNEETKEWRHLTCLPFVFYCDGVYLNGVIYWIGRQKEN--KSVIYSLNVETEKIE-SIT 263

Query: 121 FYKVGPSTNTS 128
             KV PS NTS
Sbjct: 264 VLKVDPSYNTS 266

[Close]

BLAST of PI0007515 vs. NCBI nr
Match: KAE8648955.1 (hypothetical protein Csa_007901 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-11
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MTNEYIEL---PEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLRESNTAFYIFTF 60
           MTNE+  L   P++ + ++   FY    GFGF+ KTK YK+ +A  +  +S+    +  F
Sbjct: 55  MTNEFFILSTQPKVKN-EDISCFY----GFGFNLKTKQYKLFKAIHDEEDSHLMMEVMRF 114

Query: 61  GGNNSDK-WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFS 120
           G N   K WR L  +P      GVY +G IYWIG    N    V++  +VETEKIE + +
Sbjct: 115 GKNEETKEWRHLTCLPFVFYCDGVYLNGVIYWIGRQKEN--KSVIYSLNVETEKIE-SIT 174

Query: 121 FYKVGPSTNTS 128
             KV PS NTS
Sbjct: 175 VLKVDPSYNTS 177

[Close]

BLAST of PI0007515 vs. NCBI nr
Match: XP_004141601.1 (F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_008830 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-11
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 1   MTNEYIELPEMSDFDEYRTFYRNRFGFGFSAKTKTYKVVQAYCNLR-ESNTAFYIFTFGG 60
           MTNE++ELP+  ++DE   +Y    GFGF+ KTK YK+ +     R E  +   I  FG 
Sbjct: 63  MTNEFLELPD-REYDESSPYY----GFGFNPKTKQYKLFRVTERDRYEFYSIMEIMRFGD 122

Query: 61  NNSDK--WRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTFSF 120
            +  K  WR     P+    HG Y +G IYW+G +   G  YV++  DVETE++E     
Sbjct: 123 RSETKEEWRHFKCPPISFDDHGAYLNGVIYWMGKE--KGKAYVIYALDVETEQMELVADL 179

Query: 121 YKVGP 123
            +VGP
Sbjct: 183 -EVGP 179

[Close]

BLAST of PI0007515 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 1   MTNEYIELPEMS-DFDEYRTFYRNRFGFGFSAKTKTYKVV----QAYCNLRESNTAFYIF 60
           MTNE++E+P+   + D +        GFGFS +TK YK+     +   NL++ +    IF
Sbjct: 140 MTNEFMEIPQPEIELDVH------SIGFGFSPRTKQYKLFRTEPEVLENLKKCHYIMEIF 199

Query: 61  TFGGNNSDKWRQLCLVPLEVPGHGVYFDGAIYWIGIDPTNGHHYVVFRFDVETEKIETTF 120
           TF  N   +WR    +P  V  HG Y +G IYWIG         V++  DV+TE++E T 
Sbjct: 200 TF-DNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEGEAVIYALDVDTEQMECTA 259

Query: 121 SFYKVGPS-TNTSIQIF 132
           +  ++GPS  N SI+IF
Sbjct: 260 TL-EIGPSLKNGSIKIF 268

The following BLAST results are available for this feature:

BLAST of PI0007515 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007515 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCP6	9.9e-14	41.60	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002060...	[more]
A0A0A0KSJ2	2.1e-11	39.69	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643290 PE=4 ...	[more]
A0A0A0KUJ1	2.7e-11	38.40	FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 ...	[more]
A0A1S3CB99	6.0e-11	37.23	F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1	[more]
A0A5A7TCF3	3.9e-10	35.34	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ...	[more]

BLAST of PI0007515 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039401.1	2.0e-13	41.60	F-box protein [Cucumis melo var. makuwa] >TYK00589.1 F-box protein [Cucumis melo...	[more]
XP_004141602.1	4.3e-11	39.69	F-box protein At3g07870 [Cucumis sativus]	[more]
KAE8648955.1	4.3e-11	39.69	hypothetical protein Csa_007901 [Cucumis sativus]	[more]
XP_004141601.1	5.6e-11	38.40	F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_0...	[more]
XP_008459707.1	1.2e-10	37.23	PREDICTED: F-box protein At3g07870-like [Cucumis melo]	[more]

BLAST of PI0007515 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 22..117 e-value: 3.5E-14 score: 50.7
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007515.1	PI0007515.1	mRNA