PI0007422 (gene) Melon (PI 482460) v1

Overview
NamePI0007422
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr06: 16288436 .. 16288729 (+)
RNA-Seq ExpressionPI0007422
SyntenyPI0007422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACGGAATCTAATCCCACCGTTGTACAAACAGACATTCGTCAGCCCAATGGATTAAAAATGATTTCGGCCCTACAGCTGAAGAAGGGCCTCGCTCGCAGTGAACCGACTTTCATGGCCACTCCGATTGAACCGCTCGGGACTCAGGAAGAAGTAGTCCCGAAAGACATTCTGCGTGCCTTAGAGAAGTATAACGACGTGATGCCTGATAGTCTGTCCGAGACTCTACCGCCAAGAAGAATAATTGATCATGAGATTGAACTGATGCCAGGGCAAAACTGCTGGCAATGA

mRNA sequence

ATGATCACGGAATCTAATCCCACCGTTGTACAAACAGACATTCGTCAGCCCAATGGATTAAAAATGATTTCGGCCCTACAGCTGAAGAAGGGCCTCGCTCGCAGTGAACCGACTTTCATGGCCACTCCGATTGAACCGCTCGGGACTCAGGAAGAAGTAGTCCCGAAAGACATTCTGCGTGCCTTAGAGAAGTATAACGACGTGATGCCTGATAGTCTGTCCGAGACTCTACCGCCAAGAAGAATAATTGATCATGAGATTGAACTGATGCCAGGGCAAAACTGCTGGCAATGA

Coding sequence (CDS)

ATGATCACGGAATCTAATCCCACCGTTGTACAAACAGACATTCGTCAGCCCAATGGATTAAAAATGATTTCGGCCCTACAGCTGAAGAAGGGCCTCGCTCGCAGTGAACCGACTTTCATGGCCACTCCGATTGAACCGCTCGGGACTCAGGAAGAAGTAGTCCCGAAAGACATTCTGCGTGCCTTAGAGAAGTATAACGACGTGATGCCTGATAGTCTGTCCGAGACTCTACCGCCAAGAAGAATAATTGATCATGAGATTGAACTGATGCCAGGGCAAAACTGCTGGCAATGA

Protein sequence

MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILRALEKYNDVMPDSLSETLPPRRIIDHEIELMPGQNCWQ
Homology
[Close]
BLAST of PI0007422 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.6e-28
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 568 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 627

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 628 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 659

[Close]
BLAST of PI0007422 vs. NCBI nr
Match: KAA0057285.1 (uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 28  VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 87

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 88  VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 119

[Close]
BLAST of PI0007422 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

[Close]
BLAST of PI0007422 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1   MITESNPTVVQTDIRQPNGLKMISALQLKKGLARSEPTFMATPIEPLGTQEEVVPKDILR 60
           +IT   P+VVQTD+RQP+GLKMISA+QLKKGL+R EPTFMA P++      E VPK+I+R
Sbjct: 572 VITGPTPSVVQTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMR 631

Query: 61  ALEKYNDVMPDSLSETLPPRRIIDHEIELMPG 93
            LEKY DVMPDSL ++LPPRR+IDHEIEL+PG
Sbjct: 632 VLEKYRDVMPDSLPKSLPPRRMIDHEIELVPG 663

The following BLAST results are available for this feature:
BLAST of PI0007422 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C4R15.6e-2868.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3BRZ65.6e-2868.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7UXR65.6e-2868.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22... [more]
A0A5A7T0E25.6e-2868.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5D3B7E75.6e-2868.48Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
BLAST of PI0007422 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067557.11.2e-2768.48reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0057285.11.2e-2768.48uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa][more]
KAA0037220.11.2e-2768.48reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta... [more]
KAA0063412.11.2e-2768.48reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0032849.11.2e-2768.48reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of PI0007422 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007422.1PI0007422.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity