PI0007411 (gene) Melon (PI 482460) v1

Overview


Name	PI0007411
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr06: 15850242 .. 15850655 (-)
RNA-Seq Expression	PI0007411
Synteny	PI0007411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCGTTCCATTCTAAAAGCAATTTTCCATAAGGCTCTTACAAATCTTGGAGTTAATATAAGTTATCAAAAAGCTTGGAGGGCAAAAGAACACATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGATTGAATCTAACCCATGTATGATTAGCTTCCTATATCAAATTTACATTTATTTGCAGATAAATGGGGATAGACAAATATCACAGCCTATCTAGATAGACAAATATTAGCATTTATGACATTCTATTTGTTATTTTTTATTGGTGTGATAGAAATGTTTTGTAATTTTTATAGGTACATGCACTGCTTTAGAGATGGATGATAGTTGTCATTTCAAGTTTTGCTTTATGGCTTTTGTCTCATAA

mRNA sequence

ATGTCTACTGATCGTTCCATTCTAAAAGCAATTTTCCATAAGGCTCTTACAAATCTTGGAGTTAATATAAGTTATCAAAAAGCTTGGAGGGCAAAAGAACACATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGATTGAATCTAACCCATGTACATGCACTGCTTTAGAGATGGATGATAGTTGTCATTTCAAGTTTTGCTTTATGGCTTTTGTCTCATAA

Coding sequence (CDS)

ATGTCTACTGATCGTTCCATTCTAAAAGCAATTTTCCATAAGGCTCTTACAAATCTTGGAGTTAATATAAGTTATCAAAAAGCTTGGAGGGCAAAAGAACACATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGATTGAATCTAACCCATGTACATGCACTGCTTTAGAGATGGATGATAGTTGTCATTTCAAGTTTTGCTTTATGGCTTTTGTCTCATAA

Protein sequence

MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIESNPCTCTALEMDDSCHFKFCFMAFVS

Homology

[Close]

BLAST of PI0007411 vs. ExPASy TrEMBL
Match: A0A5A7SVW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G001160 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS D SI K I HKA TNLGVNISY+KAWRAKEH+VKIL GDTVESY LIP FFDKL++S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NPCTCTALEMDDS HFKFCFMAF
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. ExPASy TrEMBL
Match: A0A5D3B9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00450 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS D SI K I HKA TNLGVNISY+KAWRAKEH+VKIL GDTVESY LIP FFDKL++S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NPCTCTALEMDDS HFKFCFMAF
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. ExPASy TrEMBL
Match: A0A5A7TJB7 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00980 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-31
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS DRSILK I HK  TNLGVNISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 39  MSIDRSILKEIVHKTRTNLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALE+DD  HFKFCFMAF
Sbjct: 99  NPGTCTALEIDDCGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MST+RSI   I HKA TNLG+NISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALEMDDS HFKFCFMAF
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAF 101

[Close]

BLAST of PI0007411 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.6e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MST+RSI   I HKA TNLG+NISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALEMDDS HFKFCFMAF
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAF 101

[Close]

BLAST of PI0007411 vs. NCBI nr
Match: KAA0033561.1 (uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS D SI K I HKA TNLGVNISY+KAWRAKEH+VKIL GDTVESY LIP FFDKL++S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NPCTCTALEMDDS HFKFCFMAF
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. NCBI nr
Match: TYJ95626.1 (uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS D SI K I HKA TNLGVNISY+KAWRAKEH+VKIL GDTVESY LIP FFDKL++S
Sbjct: 39  MSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGDTVESYALIPRFFDKLVKS 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NPCTCTALEMDDS HFKFCFMAF
Sbjct: 99  NPCTCTALEMDDSGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 7.5e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MST+RSI   I HKA TNLG+NISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALEMDDS HFKFCFMAF
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAF 101

[Close]

BLAST of PI0007411 vs. NCBI nr
Match: KAA0041797.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 7.5e-31
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MS DRSILK I HK  TNLGVNISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 39  MSIDRSILKEIVHKTRTNLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 98

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALE+DD  HFKFCFMAF
Sbjct: 99  NPGTCTALEIDDCGHFKFCFMAF 121

[Close]

BLAST of PI0007411 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 7.5e-31
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1   MSTDRSILKAIFHKALTNLGVNISYQKAWRAKEHIVKILKGDTVESYTLIPSFFDKLIES 60
           MST+RSI   I HKA TNLG+NISYQKAWRAKEH+VKIL GDTVESY LIP FFDKL+ES
Sbjct: 19  MSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVES 78

Query: 61  NPCTCTALEMDDSCHFKFCFMAF 84
           NP TCTALEMDDS HFKFCFMAF
Sbjct: 79  NPGTCTALEMDDSGHFKFCFMAF 101

The following BLAST results are available for this feature:

BLAST of PI0007411 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVW4	1.6e-31	83.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9S0	1.6e-31	83.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJB7	3.6e-31	83.13	Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T2W2	3.6e-31	83.13	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	3.6e-31	83.13	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of PI0007411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033561.1	3.4e-31	83.13	uncharacterized protein E6C27_scaffold261G001160 [Cucumis melo var. makuwa]	[more]
TYJ95626.1	3.4e-31	83.13	uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa]	[more]
TYK02872.1	7.5e-31	83.13	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0041797.1	7.5e-31	83.13	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 prot...	[more]
KAA0037812.1	7.5e-31	83.13	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]

BLAST of PI0007411 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007411.1	PI0007411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding