PI0007204 (gene) Melon (PI 482460) v1

Overview


Name	PI0007204
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr04: 2526575 .. 2527770 (+)
RNA-Seq Expression	PI0007204
Synteny	PI0007204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCTTCCCTCTGCCGTCGTCTCCATGGCCTCTTCAACCAATCTCGTTCCAGCACACCCGTATTCAACAAACCCGAACTGTCGCGTCCTTCTTCAGCTACCAAAAAATCCAACAAATCTCCCGCCCAACTCCTCTCACCCCCGAACAACGTCTTCAAAAGGTCGTTAAGAGGTTCATTAAGAACTCCGAGTCCGAACGATTCCGCCGCAAGAAAGATGTCTATGATTCTACAGTTCGCCTTCTTGCTGTCCGTAAAAATTTTTCCATGATTGAAGATATTATAGAAGCCCAGAAGAAGTATGAGGAAATTAAAGATGAAGGATTCGCGACCCGCCTCATTAAGCTCTATGGGAAAGCGGGTATGTTCTCTCACGCGCGCAAGTTGTTCGATCAATTGCCTGAACTGAATTGCGAGCGGACTGTTCAGTCTTTTAATGCCCTTTTGGCTTCTTGTGTTAAGTCTAAGGAATTTGATCAAGTTGAAAAGATTTTTAGGGAGGTACCACAGGAAATTTCGATAGAAGCAGATGTGATATCGTATAATATTGTTATCAATGCTTACTGCGAGATGGACGCTTTGGATAAAGCCGTCTTCTTCTTCAATGCCATGGAGAAGAATGGAATGGAGCCAAATTTGGTTACATTCAATACGCTTTTAACTGAATTCTATAGAAAGGGTCAGTTCTTAGATGGAGAAAGCATGTGGGCTAGGATGGAAAACAAGAACATTGCTCCTGATCTAATAAGTTACAATGCGAGGTTGCGAGGAATGGTTCTAGAGAAAAGAATTCAAGATGGGATTGAGTTGCTAGCTGAAATGGAGGAGAAGGAAATCAAGCCAGATGCGTACACTTACCATATTTTGATTAAAGGCTTTTGTGAAGATGGGAATTTGGAGGAAGCCAAAAAATGGTATTACAAATTGAAGGAGAGTGAAGTTAATCCAAATGCATCGACTTACAAGACACTTCTCCCCTTCCTTTGCGAGCAGGGTGATTTTGATTCTGGACTTCAGCTGTGCAAGGAGGCCATTGATAATGGATTAGTTCTTCATACAGCGGAGGTGCAGCGTGTGGTTGATGGATTGGCTGAAGTTTCCAAGATTGAAGAAGCAAAGGACCTTGTGGAGCTCTATAATTCTAAGACTAAGTTAAATTTCAAATTGAAATTTCCTGAGAAGAGCACTTGA

mRNA sequence

ATGTCTTCCTCTTCCCTCTGCCGTCGTCTCCATGGCCTCTTCAACCAATCTCGTTCCAGCACACCCGTATTCAACAAACCCGAACTGTCGCGTCCTTCTTCAGCTACCAAAAAATCCAACAAATCTCCCGTCGTTAAGAGGTTCATTAAGAACTCCGAGTCCGAACGATTCCGCCGCAAGAAAGATGTCTATGATTCTACAGTTCGCCTTCTTGCTGTCCGTAAAAATTTTTCCATGATTGAAGATATTATAGAAGCCCAGAAGAAGTATGAGGAAATTAAAGATGAAGGATTCGCGACCCGCCTCATTAAGCTCTATGGGAAAGCGGATGGGAATTTGGAGGAAGCCAAAAAATGGTATTACAAATTGAAGGAGAGTGAAGTTAATCCAAATGCATCGACTTACAAGACACTTCTCCCCTTCCTTTGCGAGCAGGGTGATTTTGATTCTGGACTTCAGCTGTGCAAGGAGGCCATTGATAATGGATTAGTTCTTCATACAGCGGAGGTGCAGCGTGTGGTTGATGGATTGGCTGAAGTTTCCAAGATTGAAGAAGCAAAGGACCTTGTGGAGCTCTATAATTCTAAGACTAAGTTAAATTTCAAATTGAAATTTCCTGAGAAGAGCACTTGA

Coding sequence (CDS)

ATGTCTTCCTCTTCCCTCTGCCGTCGTCTCCATGGCCTCTTCAACCAATCTCGTTCCAGCACACCCGTATTCAACAAACCCGAACTGTCGCGTCCTTCTTCAGCTACCAAAAAATCCAACAAATCTCCCGTCGTTAAGAGGTTCATTAAGAACTCCGAGTCCGAACGATTCCGCCGCAAGAAAGATGTCTATGATTCTACAGTTCGCCTTCTTGCTGTCCGTAAAAATTTTTCCATGATTGAAGATATTATAGAAGCCCAGAAGAAGTATGAGGAAATTAAAGATGAAGGATTCGCGACCCGCCTCATTAAGCTCTATGGGAAAGCGGATGGGAATTTGGAGGAAGCCAAAAAATGGTATTACAAATTGAAGGAGAGTGAAGTTAATCCAAATGCATCGACTTACAAGACACTTCTCCCCTTCCTTTGCGAGCAGGGTGATTTTGATTCTGGACTTCAGCTGTGCAAGGAGGCCATTGATAATGGATTAGTTCTTCATACAGCGGAGGTGCAGCGTGTGGTTGATGGATTGGCTGAAGTTTCCAAGATTGAAGAAGCAAAGGACCTTGTGGAGCTCTATAATTCTAAGACTAAGTTAAATTTCAAATTGAAATTTCCTGAGAAGAGCACTTGA

Protein sequence

MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSPVVKRFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYGKADGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAEVQRVVDGLAEVSKIEEAKDLVELYNSKTKLNFKLKFPEKST

Homology

[Close]

BLAST of PI0007204 vs. ExPASy Swiss-Prot
Match: Q9LG23 (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-14
Identity = 64/209 (30.62%), Postives = 94/209 (44.98%), Query Frame = 0


Query: 4   SSLCRRLHGLFN---------------QSRSSTPVFNKPELSRPSSATKKSNKSPVVKRF 63
           SSL R L G FN               +  + T   + P+ S  S    + N   +V++F
Sbjct: 2   SSLSRVLRGTFNTCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKF 61

Query: 64  IKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYGK 123
            K  ESERFR    VYD TVR L   K    +E+I+E QKKY ++  EGFA R+I LYGK
Sbjct: 62  KKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGK 121

Query: 124 ADGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDN-GLVLHT 183
           A G  E A+K + ++   +   +  ++  LL        FD   +L  E      +    
Sbjct: 122 A-GMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDI 181

Query: 184 AEVQRVVDGLAEVSKIEEAKDLVELYNSK 197
                ++  L E   + EA  L++   +K
Sbjct: 182 VSYNTLIKALCEKDSLPEAVALLDEIENK 209

HSP 2 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 32/99 (32.32%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 110 DGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAE 169
           +G ++EA+ WY ++ +    P+ +T+  LLP +C+ GDF+S ++L KE      ++    
Sbjct: 298 EGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTT 357

Query: 170 VQRVVDGLAEVSKIEEAKDLVELYNSKTKLNFKLKFPEK 209
           +Q++VD L + SK EEA+++V++  +   L  KL  P +
Sbjct: 358 LQQLVDELVKGSKREEAEEIVKIAKTNDFLKLKLNLPSQ 396

[Close]

BLAST of PI0007204 vs. ExPASy Swiss-Prot
Match: Q9LK57 (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-13
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 60  KKDVYDSTVRLLAVRKNFSMIEDIIEAQK-KYEEIKDEGFA-TRLIKLYGKADGNLEEAK 119
           K+D+     RLL +       E +    K K  E+K + F  T +IK +  ++G L+EA 
Sbjct: 244 KRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGF-VSEGKLDEAI 303

Query: 120 KWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAEVQRVVDGL 179
            WY +++++   P    + +LLP +C+ GD +S  +LCKE     L++  A +Q VVD L
Sbjct: 304 TWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDAL 363

Query: 180 AEVSKIEEAKDLVELYNSKTKLNFKLK-FPEK 209
            + SK +EA+++VEL  +   L  KL+ FP++
Sbjct: 364 VKGSKQDEAEEIVELAKTNDYLQCKLRLFPKE 394

[Close]

BLAST of PI0007204 vs. ExPASy Swiss-Prot
Match: Q9LK58 (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-12
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0


Query: 4   SSLCRRLHGLFNQSRSSTPVFNKP------------------------ELSRPSSATKKS 63
           SSL  RLHG+F +S  +T    KP                        + S  +  +K S
Sbjct: 6   SSLYSRLHGIFKESSIATAKSAKPRSQTKSTKFPSKLKASTASVGDGGQSSNDAKDSKNS 65

Query: 64  NKSPVVKRFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFA 123
             +  V++F ++ ESE FR+   +Y + +R L   K FS I+++++ QKK+++IK E F 
Sbjct: 66  KLTQKVEKFKRSCESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFV 125

Query: 124 TRLIKLYGKA----------------------------------DGNLEEAKKWYYKLKE 163
            R++ LYG +                                     L+EA K + +L E
Sbjct: 126 IRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPE 185

[Close]

BLAST of PI0007204 vs. ExPASy Swiss-Prot
Match: Q8LE47 (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.9e-10
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 110 DGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAE 169
           + + EEAKK +  +      P++  Y TL+ +LC+ GDF++ L LCKE+++   V   + 
Sbjct: 305 EDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSI 364

Query: 170 VQRVVDGLAEVSKIEEAKDLVELYNSKTKLNFKL 204
           ++ +V+GLA+ SK+EEAK+L+     K   N +L
Sbjct: 365 MKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVEL 398

[Close]

BLAST of PI0007204 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 61  KDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFA------TRLIKLYGKADGNLE 120
           +D+    +   A+   F  I D++EA K + E+  +G        T LI  Y KA G+++
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA-GHMK 439

Query: 121 EAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAEVQRVV 180
           +A + +  + ++  +PN  TY TL+  LC++GD DS  +L  E    GL  +      +V
Sbjct: 440 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 499

Query: 181 DGLAEVSKIEEAKDLV 191
           +GL +   IEEA  LV
Sbjct: 500 NGLCKSGNIEEAVKLV 514

[Close]

BLAST of PI0007204 vs. ExPASy TrEMBL
Match: A0A0A0KLB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516700 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.4e-63
Identity = 166/354 (46.89%), Postives = 180/354 (50.85%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           M SSSL RRLHG+FN SRS T  FNK   S PSSAT+K NKS              +V +
Sbjct: 1   MFSSSLSRRLHGIFNHSRSPTSRFNKSNPSLPSSATQKCNKSTAATPLTAEEHLQNIVDK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKN+ES+RFR +K  YDSTVRLLAVRK FS+IEDIIEAQKKYE+IK EGFATRLIKLYG
Sbjct: 61  FIKNTESQRFRHQKGTYDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKVEGFATRLIKLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMEVPQEVSIKADVISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLTA 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 LYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEEKEIKPD 240

[Close]

BLAST of PI0007204 vs. ExPASy TrEMBL
Match: A0A5D3CPX8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006920 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.5e-62
Identity = 172/398 (43.22%), Postives = 184/398 (46.23%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           MSSSSL RRLHG+FN SRS T +FNKP LS PSSATKKSNKSP             +  +
Sbjct: 1   MSSSSLFRRLHGIFNHSRSPTRIFNKPNLSLPSSATKKSNKSPAATPLTAEQGLQELANK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKNSES+ FRRKK  YD T+RLLAVRK+FSMIEDIIEAQKKYE+IKDEGFATRLI LYG
Sbjct: 61  FIKNSESKLFRRKKGTYDYTIRLLAVRKSFSMIEDIIEAQKKYEDIKDEGFATRLIMLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMLSHARKLFDELPALNCERTVRSFNALLSSCVNSKEFDQVEKIFREVPRELSIEADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 RSYNIVINAYCEMDALDKAILFFNDMEKNGMEPDLVTFNTLLAALYRKGQFSDGESMWAM 240

[Close]

BLAST of PI0007204 vs. ExPASy TrEMBL
Match: A0A5A7UGU3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003530 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.5e-62
Identity = 172/398 (43.22%), Postives = 184/398 (46.23%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           MSSSSL RRLHG+FN SRS T +FNKP LS PSSATKKSNKSP             +  +
Sbjct: 1   MSSSSLFRRLHGIFNHSRSPTRIFNKPNLSLPSSATKKSNKSPAATPLTAEQGLQELANK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKNSES+ FRRKK  YD T+RLLAVRK+FSMIEDIIEAQKKYE+IKDEGFATRLI LYG
Sbjct: 61  FIKNSESKLFRRKKGTYDYTIRLLAVRKSFSMIEDIIEAQKKYEDIKDEGFATRLIMLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMLSHARKLFDELPALNCERTVRSFNALLSSCVNSKEFDQVEKIFREVPRELSIEADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 RSYNIVINAYCEMDALDKAILFFNDMEKNGMEPDLVTFNTLLAALYRKGQFSDGESIWAM 240

[Close]

BLAST of PI0007204 vs. ExPASy TrEMBL
Match: A0A1S3AZY0 (pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103484574 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.5e-62
Identity = 172/398 (43.22%), Postives = 184/398 (46.23%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           MSSSSL RRLHG+FN SRS T +FNKP LS PSSATKKSNKSP             +  +
Sbjct: 1   MSSSSLFRRLHGIFNHSRSPTRIFNKPNLSLPSSATKKSNKSPAATPLTAEQGLQELANK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKNSES+ FRRKK  YD T+RLLAVRK+FSMIEDIIEAQKKYE+IKDEGFATRLI LYG
Sbjct: 61  FIKNSESKLFRRKKGTYDYTIRLLAVRKSFSMIEDIIEAQKKYEDIKDEGFATRLIMLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMLSHARKLFDELPALNCERTVRSFNALLSSCVNSKEFDQVEKIFREVPRELSIEADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 RSYNIVINAYCEMDALDKAILFFNDMEKNGMEPDLVTFNTLLAALYRKGQFSDGESIWAM 240

[Close]

BLAST of PI0007204 vs. ExPASy TrEMBL
Match: A0A5A7UC35 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006900 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 7.0e-60
Identity = 171/399 (42.86%), Postives = 182/399 (45.61%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP--------------VVK 60
           M SSSL RRLHG+FN SRS TP FNKP  S PSSATKK NKS               +V 
Sbjct: 1   MFSSSLSRRLHGIFNHSRSPTPRFNKPNPSPPSSATKKCNKSTAATPLTSEQRRFQNLVD 60

Query: 61  RFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLY 120
           RFIKNSES+RFR+ K  YD TVR+LAVRKNFSMIEDIIEAQKKYEEIK+EGFATRLIKLY
Sbjct: 61  RFIKNSESKRFRQNKGKYDYTVRVLAVRKNFSMIEDIIEAQKKYEEIKEEGFATRLIKLY 120

Query: 121 GKA--------------------------------------------------------- 180
           GKA                                                         
Sbjct: 121 GKAGMISHARKLFDELPALNCERTAQSFNALLASCVKCKEFDQVDKIFREVQQEVSIKAD 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 VISYNIVINAYCEMDALDKAILFFNDMEKNGMEPNLVTFNTLLTALYRKGQFLDGESIWA 240

[Close]

BLAST of PI0007204 vs. NCBI nr
Match: TYK13084.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 172/398 (43.22%), Postives = 184/398 (46.23%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           MSSSSL RRLHG+FN SRS T +FNKP LS PSSATKKSNKSP             +  +
Sbjct: 1   MSSSSLFRRLHGIFNHSRSPTRIFNKPNLSLPSSATKKSNKSPAATPLTAEQGLQELANK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKNSES+ FRRKK  YD T+RLLAVRK+FSMIEDIIEAQKKYE+IKDEGFATRLI LYG
Sbjct: 61  FIKNSESKLFRRKKGTYDYTIRLLAVRKSFSMIEDIIEAQKKYEDIKDEGFATRLIMLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMLSHARKLFDELPALNCERTVRSFNALLSSCVNSKEFDQVEKIFREVPRELSIEADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 RSYNIVINAYCEMDALDKAILFFNDMEKNGMEPDLVTFNTLLAALYRKGQFSDGESMWAM 240

[Close]

BLAST of PI0007204 vs. NCBI nr
Match: XP_008439937.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Cucumis melo] >KAA0052739.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-61
Identity = 172/398 (43.22%), Postives = 184/398 (46.23%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           MSSSSL RRLHG+FN SRS T +FNKP LS PSSATKKSNKSP             +  +
Sbjct: 1   MSSSSLFRRLHGIFNHSRSPTRIFNKPNLSLPSSATKKSNKSPAATPLTAEQGLQELANK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKNSES+ FRRKK  YD T+RLLAVRK+FSMIEDIIEAQKKYE+IKDEGFATRLI LYG
Sbjct: 61  FIKNSESKLFRRKKGTYDYTIRLLAVRKSFSMIEDIIEAQKKYEDIKDEGFATRLIMLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMLSHARKLFDELPALNCERTVRSFNALLSSCVNSKEFDQVEKIFREVPRELSIEADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 RSYNIVINAYCEMDALDKAILFFNDMEKNGMEPDLVTFNTLLAALYRKGQFSDGESIWAM 240

[Close]

BLAST of PI0007204 vs. NCBI nr
Match: KAA0052740.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK13083.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-59
Identity = 171/399 (42.86%), Postives = 182/399 (45.61%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP--------------VVK 60
           M SSSL RRLHG+FN SRS TP FNKP  S PSSATKK NKS               +V 
Sbjct: 1   MFSSSLSRRLHGIFNHSRSPTPRFNKPNPSPPSSATKKCNKSTAATPLTSEQRRFQNLVD 60

Query: 61  RFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLY 120
           RFIKNSES+RFR+ K  YD TVR+LAVRKNFSMIEDIIEAQKKYEEIK+EGFATRLIKLY
Sbjct: 61  RFIKNSESKRFRQNKGKYDYTVRVLAVRKNFSMIEDIIEAQKKYEEIKEEGFATRLIKLY 120

Query: 121 GKA--------------------------------------------------------- 180
           GKA                                                         
Sbjct: 121 GKAGMISHARKLFDELPALNCERTAQSFNALLASCVKCKEFDQVDKIFREVQQEVSIKAD 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 VISYNIVINAYCEMDALDKAILFFNDMEKNGMEPNLVTFNTLLTALYRKGQFLDGESIWA 240

[Close]

BLAST of PI0007204 vs. NCBI nr
Match: XP_008441088.2 (PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-59
Identity = 171/399 (42.86%), Postives = 182/399 (45.61%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP--------------VVK 60
           M SSSL RRLHG+FN SRS TP FNKP  S PSSATKK NKS               +V 
Sbjct: 1   MFSSSLSRRLHGIFNHSRSPTPRFNKPNPSPPSSATKKCNKSTAATPLTSEQRRFQNLVD 60

Query: 61  RFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLY 120
           RFIKNSES+RFR+ K  YD TVR+LAVRKNFSMIEDIIEAQKKYEEIK+EGFATRLIKLY
Sbjct: 61  RFIKNSESKRFRQNKGKYDYTVRVLAVRKNFSMIEDIIEAQKKYEEIKEEGFATRLIKLY 120

Query: 121 GKA--------------------------------------------------------- 180
           GKA                                                         
Sbjct: 121 GKAGMISHARKLFDELPALNCERTAQSFNALLASCVKCKEFDQVDKIFREVQQEVSIKAD 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 VISYNIVINAYCEMDALDKAILFFNDMEKNGMEPNLVTFNTLLTALYRKGQFLDGESIWA 240

[Close]

BLAST of PI0007204 vs. NCBI nr
Match: XP_031742914.1 (pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Cucumis sativus] >KAE8647676.1 hypothetical protein Csa_003894 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-58
Identity = 166/398 (41.71%), Postives = 181/398 (45.48%), Query Frame = 0


Query: 1   MSSSSLCRRLHGLFNQSRSSTPVFNKPELSRPSSATKKSNKSP-------------VVKR 60
           M SSSL RRLHG+FN SRS T  FNK   S PSSAT+K NKS              +V +
Sbjct: 1   MFSSSLSRRLHGIFNHSRSPTSRFNKSNPSLPSSATQKCNKSTAATPLTAEEHLQNIVDK 60

Query: 61  FIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYG 120
           FIKN+ES+RFR +K  YDSTVRLLAVRK FS+IEDIIEAQKKYE+IK EGFATRLIKLYG
Sbjct: 61  FIKNTESQRFRHQKGTYDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKVEGFATRLIKLYG 120

Query: 121 KA---------------------------------------------------------- 180
           KA                                                          
Sbjct: 121 KAGMFSHARKLFDELPELNCERTVKSFNSLLASCVKSKELDQVEKIFREVPQEVSIKADV 180

Query: 181 ------------------------------------------------------------ 211
                                                                       
Sbjct: 181 ISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLTALYRKGQFFDGERVWAT 240

[Close]

BLAST of PI0007204 vs. TAIR 10
Match: AT1G55890.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-15
Identity = 64/209 (30.62%), Postives = 94/209 (44.98%), Query Frame = 0


Query: 4   SSLCRRLHGLFN---------------QSRSSTPVFNKPELSRPSSATKKSNKSPVVKRF 63
           SSL R L G FN               +  + T   + P+ S  S    + N   +V++F
Sbjct: 2   SSLSRVLRGTFNTCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKF 61

Query: 64  IKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFATRLIKLYGK 123
            K  ESERFR    VYD TVR L   K    +E+I+E QKKY ++  EGFA R+I LYGK
Sbjct: 62  KKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGK 121

Query: 124 ADGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDN-GLVLHT 183
           A G  E A+K + ++   +   +  ++  LL        FD   +L  E      +    
Sbjct: 122 A-GMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDI 181

Query: 184 AEVQRVVDGLAEVSKIEEAKDLVELYNSK 197
                ++  L E   + EA  L++   +K
Sbjct: 182 VSYNTLIKALCEKDSLPEAVALLDEIENK 209

HSP 2 Score: 70.1 bits (170), Expect = 2.4e-12
Identity = 32/99 (32.32%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 110 DGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAE 169
           +G ++EA+ WY ++ +    P+ +T+  LLP +C+ GDF+S ++L KE      ++    
Sbjct: 298 EGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTT 357

Query: 170 VQRVVDGLAEVSKIEEAKDLVELYNSKTKLNFKLKFPEK 209
           +Q++VD L + SK EEA+++V++  +   L  KL  P +
Sbjct: 358 LQQLVDELVKGSKREEAEEIVKIAKTNDFLKLKLNLPSQ 396

[Close]

BLAST of PI0007204 vs. TAIR 10
Match: AT3G13160.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-14
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 60  KKDVYDSTVRLLAVRKNFSMIEDIIEAQK-KYEEIKDEGFA-TRLIKLYGKADGNLEEAK 119
           K+D+     RLL +       E +    K K  E+K + F  T +IK +  ++G L+EA 
Sbjct: 244 KRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGF-VSEGKLDEAI 303

Query: 120 KWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAEVQRVVDGL 179
            WY +++++   P    + +LLP +C+ GD +S  +LCKE     L++  A +Q VVD L
Sbjct: 304 TWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDAL 363

Query: 180 AEVSKIEEAKDLVELYNSKTKLNFKLK-FPEK 209
            + SK +EA+++VEL  +   L  KL+ FP++
Sbjct: 364 VKGSKQDEAEEIVELAKTNDYLQCKLRLFPKE 394

[Close]

BLAST of PI0007204 vs. TAIR 10
Match: AT3G13150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-13
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0


Query: 4   SSLCRRLHGLFNQSRSSTPVFNKP------------------------ELSRPSSATKKS 63
           SSL  RLHG+F +S  +T    KP                        + S  +  +K S
Sbjct: 6   SSLYSRLHGIFKESSIATAKSAKPRSQTKSTKFPSKLKASTASVGDGGQSSNDAKDSKNS 65

Query: 64  NKSPVVKRFIKNSESERFRRKKDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFA 123
             +  V++F ++ ESE FR+   +Y + +R L   K FS I+++++ QKK+++IK E F 
Sbjct: 66  KLTQKVEKFKRSCESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFV 125

Query: 124 TRLIKLYGKA----------------------------------DGNLEEAKKWYYKLKE 163
            R++ LYG +                                     L+EA K + +L E
Sbjct: 126 IRIMLLYGYSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPE 185

[Close]

BLAST of PI0007204 vs. TAIR 10
Match: AT1G61870.1 (pentatricopeptide repeat 336 )

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 110 DGNLEEAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAE 169
           + + EEAKK +  +      P++  Y TL+ +LC+ GDF++ L LCKE+++   V   + 
Sbjct: 305 EDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSI 364

Query: 170 VQRVVDGLAEVSKIEEAKDLVELYNSKTKLNFKL 204
           ++ +V+GLA+ SK+EEAK+L+     K   N +L
Sbjct: 365 MKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVEL 398

[Close]

BLAST of PI0007204 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-10
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 61  KDVYDSTVRLLAVRKNFSMIEDIIEAQKKYEEIKDEGFA------TRLIKLYGKADGNLE 120
           +D+    +   A+   F  I D++EA K + E+  +G        T LI  Y KA G+++
Sbjct: 380 RDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA-GHMK 439

Query: 121 EAKKWYYKLKESEVNPNASTYKTLLPFLCEQGDFDSGLQLCKEAIDNGLVLHTAEVQRVV 180
           +A + +  + ++  +PN  TY TL+  LC++GD DS  +L  E    GL  +      +V
Sbjct: 440 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIV 499

Query: 181 DGLAEVSKIEEAKDLV 191
           +GL +   IEEA  LV
Sbjct: 500 NGLCKSGNIEEAVKLV 514

The following BLAST results are available for this feature:

BLAST of PI0007204 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LG23	5.6e-14	30.62	Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop...	[more]
Q9LK57	4.7e-13	33.55	Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidop...	[more]
Q9LK58	6.9e-12	26.61	Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX...	[more]
Q8LE47	4.9e-10	36.17	Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop...	[more]
Q0WVK7	4.2e-09	31.62	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]

BLAST of PI0007204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLB2	1.4e-63	46.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516700 PE=4 SV=1	[more]
A0A5D3CPX8	7.5e-62	43.22	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UGU3	7.5e-62	43.22	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3AZY0	7.5e-62	43.22	pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like OS=Cuc...	[more]
A0A5A7UC35	7.0e-60	42.86	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of PI0007204 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13084.1	1.5e-61	43.22	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008439937.1	1.5e-61	43.22	PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-...	[more]
KAA0052740.1	1.4e-59	42.86	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK13083...	[more]
XP_008441088.2	1.4e-59	42.86	PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Cucumis m...	[more]
XP_031742914.1	3.6e-58	41.71	pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Cucum...	[more]

BLAST of PI0007204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55890.1	4.0e-15	30.62	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13160.1	3.4e-14	33.55	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13150.1	4.9e-13	26.61	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G61870.1	3.5e-11	36.17	pentatricopeptide repeat 336	[more]
AT1G05670.1	3.0e-10	31.62	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 35..204 e-value: 8.8E-16 score: 60.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 134..164 e-value: 0.0017 score: 16.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 131..165 score: 9.20755
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..43
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 110..206
None	No IPR available	PANTHER	PTHR46128:SF161	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 110..206
None	No IPR available	PANTHER	PTHR46128:SF161	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 28..109
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 28..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007204.1	PI0007204.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding