PI0007109 (gene) Melon (PI 482460) v1

Overview


Name	PI0007109
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 29451622 .. 29452149 (+)
RNA-Seq Expression	PI0007109
Synteny	PI0007109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTGGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCAAAAGAAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAAGCTTCCATTGAAAAAGGGACCCATCAGCTCAGAGAAAAGGTGGAGATTCTGAAATGGGTGTTTTTAGAAAATTTGGTGAGAAATGGACAGGTCGTAGGGGTTTGAATGAAGAGAAAAAAAAAGTCCAAATCGTCAACTGGGGAAGCGATTGAGAAGTGAGAAAGTGGCCAAATTAGAGATTTCAAAGGGGGAAAAATGAGTAGAATAGTTAAAAGAGTGTGTGGTGATTAGTGTAAGAACTAAGAAATCTGTTGAGAAACCGAAGGTTGTTATTATATAAGGAGAGTAGGTGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTTTCTCTACATAAATGGTCGATTTTTCAAGGAAAAACGAAGCACATGATTCAATTTAACAAACTTCTATGA

mRNA sequence

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTGGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCAAAAGAAAAAACGAGAAAAGGTGGAGATTCTGAAATGGGTGTTTTTAGAAAATTTGGTGAGAAATGGACAGGTCGTAGGGGTTTGAATGAAGAGAAAAAAAAAGTCCAAATCGAGAGTAGGTGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTTTCTCTACATAAATGGTCGATTTTTCAAGGAAAAACGAAGCACATGATTCAATTTAACAAACTTCTATGA

Coding sequence (CDS)

ATGAAGGGAGCTAAAATGGAAGAAACCGATCAATCTGTGGCTCAGCACAGAGGTTATGGAAAGGCTGCAACAGACCCAAAAGAAAAAACGAGAAAAGGTGGAGATTCTGAAATGGGTGTTTTTAGAAAATTTGGTGAGAAATGGACAGGTCGTAGGGGTTTGAATGAAGAGAAAAAAAAAGTCCAAATCGAGAGTAGGTGGCCAAGTTCTCTGGTTTTCAGGCAACCGGTAATGGGTTCTGCATTTTCTCTACATAAATGGTCGATTTTTCAAGGAAAAACGAAGCACATGATTCAATTTAACAAACTTCTATGA

Protein sequence

MKGAKMEETDQSVAQHRGYGKAATDPKEKTRKGGDSEMGVFRKFGEKWTGRRGLNEEKKKVQIESRWPSSLVFRQPVMGSAFSLHKWSIFQGKTKHMIQFNKLL

Homology

[Close]

BLAST of PI0007109 vs. ExPASy TrEMBL
Match: A0A0A0LJU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 84/108 (77.78%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MKGAKMEETDQSVAQHRGYGKAATDPKEKTRKGGDSEMGVFRKFGEKWTGRRGLNEEKK- 60
           MKGAKMEETDQSVAQHRGYGKAATDP+ K             KFGEKWTGR GLNEEKK 
Sbjct: 1   MKGAKMEETDQSVAQHRGYGKAATDPQRKN-----------EKFGEKWTGRWGLNEEKKI 60

Query: 61  KVQI---ESRWPSSLVFRQPVMGSAFSLHKWSIFQGKTKHMIQFNKLL 105
           KVQI   ESR PSSLVFRQPVMGSA SLHKWSI QGKTK MIQFNKLL
Sbjct: 61  KVQIVNWESRRPSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

[Close]

BLAST of PI0007109 vs. NCBI nr
Match: KGN62028.1 (hypothetical protein Csa_006660 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.3e-32
Identity = 84/108 (77.78%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MKGAKMEETDQSVAQHRGYGKAATDPKEKTRKGGDSEMGVFRKFGEKWTGRRGLNEEKK- 60
           MKGAKMEETDQSVAQHRGYGKAATDP+ K             KFGEKWTGR GLNEEKK 
Sbjct: 1   MKGAKMEETDQSVAQHRGYGKAATDPQRKN-----------EKFGEKWTGRWGLNEEKKI 60

Query: 61  KVQI---ESRWPSSLVFRQPVMGSAFSLHKWSIFQGKTKHMIQFNKLL 105
           KVQI   ESR PSSLVFRQPVMGSA SLHKWSI QGKTK MIQFNKLL
Sbjct: 61  KVQIVNWESRRPSSLVFRQPVMGSALSLHKWSISQGKTKEMIQFNKLL 97

The following BLAST results are available for this feature:

BLAST of PI0007109 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJU1	3.1e-32	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1	[more]

BLAST of PI0007109 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62028.1	6.3e-32	77.78	hypothetical protein Csa_006660 [Cucumis sativus]	[more]

BLAST of PI0007109 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007109.1	PI0007109.1	mRNA