PI0007077 (gene) Melon (PI 482460) v1

Overview
NamePI0007077
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr02: 17304138 .. 17304512 (+)
RNA-Seq ExpressionPI0007077
SyntenyPI0007077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGAATTTGAACAGGTCATTAGTCGTGATCTTGTAATGGATCCACAAGAAGCTGCTAGACTCCTAAATGTGTTCACAACTTCTCAACGTCAGTTACTAATGACGTTGGAGTTATTAATGAACAACCACAGGAGGATACAACATACAACATATGACGCTAGGCATAGAATTAGGCAGCTAGAGTACTTCTGCATGATCCATGAATCCGACCTAGTATGTCGTCAAAGTACTAGAATGGACAGAAGATGTTTTGCCATTCTATGCCACCTACTTAGGATGACTTCTGGATTAGGGTCCACGGAAGTCGTCGACATCGAGGAGATGGTCGTCATGTTCCTACACGTACTCGCGTACGAAGTGAAGAACTGA

mRNA sequence

ATGGAAAATGAATTTGAACAGGTCATTAGTCGTGATCTTGTAATGGATCCACAAGAAGCTGCTAGACTCCTAAATGTGTTCACAACTTCTCAACGTCAGTTACTAATGACGTTGGAGTTATTAATGAACAACCACAGGAGGATACAACATACAACATATGACGCTAGGCATAGAATTAGGCAGCTAGAGTACTTCTGCATGATCCATGAATCCGACCTAGTATGTCGTCAAAGTACTAGAATGGACAGAAGATGTTTTGCCATTCTATGCCACCTACTTAGGATGACTTCTGGATTAGGGTCCACGGAAGTCGTCGACATCGAGGAGATGGTCGTCATGTTCCTACACGTACTCGCGTACGAAGTGAAGAACTGA

Coding sequence (CDS)

ATGGAAAATGAATTTGAACAGGTCATTAGTCGTGATCTTGTAATGGATCCACAAGAAGCTGCTAGACTCCTAAATGTGTTCACAACTTCTCAACGTCAGTTACTAATGACGTTGGAGTTATTAATGAACAACCACAGGAGGATACAACATACAACATATGACGCTAGGCATAGAATTAGGCAGCTAGAGTACTTCTGCATGATCCATGAATCCGACCTAGTATGTCGTCAAAGTACTAGAATGGACAGAAGATGTTTTGCCATTCTATGCCACCTACTTAGGATGACTTCTGGATTAGGGTCCACGGAAGTCGTCGACATCGAGGAGATGGTCGTCATGTTCCTACACGTACTCGCGTACGAAGTGAAGAACTGA

Protein sequence

MENEFEQVISRDLVMDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLVCRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN
Homology
[Close]
BLAST of PI0007077 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD  E A ++N F  SQRQLL+ LELL N+ +RI H  Y+ RHRIRQL YF MIHESDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRRCFAILCHLLR  +GL STEVVD+EEMV MFLH+LA++VKN
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKN 110

[Close]
BLAST of PI0007077 vs. ExPASy TrEMBL
Match: A0A5A7UUT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00380 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.5e-35
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD Q    +L  FT++QRQ+L+TLELLMNN++R+ HT  D RHRIR+L YF MIHESDLV
Sbjct: 1   MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRR FAILCHLLR  +GL STE+VD+EEMV MFLHVLA++VKN
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110

[Close]
BLAST of PI0007077 vs. ExPASy TrEMBL
Match: A0A5A7U3B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00460 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD Q    +L  FT +QRQ+L+TLELLMNN++R+ HT  D RHRIR+L YF MIHESDLV
Sbjct: 1   MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPSDTRHRIRELAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRR FAILCHLLR  +GL STE+VD+EEMV MFLHVLA++VKN
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110

[Close]
BLAST of PI0007077 vs. ExPASy TrEMBL
Match: A0A5D3BWN8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00100 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           M+ Q    +L VFT +QRQ+L+TLELLMN +RRI HT  D RHRIRQL YF MIHESDLV
Sbjct: 1   MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMD+R FAILCHLLR   GL STE+VDIEEMV MFLHVLAY VKN
Sbjct: 61  CRQSTRMDKRTFAILCHLLRTVYGLSSTEIVDIEEMVAMFLHVLAYNVKN 110

[Close]
BLAST of PI0007077 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 78/110 (70.91%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD QE A ++N F  SQRQLL+ LELL N+ +RI H  Y+ RHRIRQL YF MIH SDLV
Sbjct: 1   MDEQELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CR+STRMDRRCFAILCHLLR  +GL STEVVD+EEMV MFLH+LA++VKN
Sbjct: 61  CRESTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKN 110

[Close]
BLAST of PI0007077 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.3e-35
Identity = 79/110 (71.82%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD  E A ++N F  SQRQLL+ LELL N+ +RI H  Y+ RHRIRQL YF MIHESDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRRCFAILCHLLR  +GL STEVVD+EEMV MFLH+LA++VKN
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKN 110

[Close]
BLAST of PI0007077 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 7.3e-35
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD Q    +L  FT++QRQ+L+TLELLMNN++R+ HT  D RHRIR+L YF MIHESDLV
Sbjct: 1   MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRR FAILCHLLR  +GL STE+VD+EEMV MFLHVLA++VKN
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110

[Close]
BLAST of PI0007077 vs. NCBI nr
Match: KAA0048777.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD Q    +L  FT +QRQ+L+TLELLMNN++R+ HT  D RHRIR+L YF MIHESDLV
Sbjct: 1   MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPSDTRHRIRELAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMDRR FAILCHLLR  +GL STE+VD+EEMV MFLHVLA++VKN
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110

[Close]
BLAST of PI0007077 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 78/110 (70.91%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           MD QE A ++N F  SQRQLL+ LELL N+ +RI H  Y+ RHRIRQL YF MIH SDLV
Sbjct: 1   MDEQELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CR+STRMDRRCFAILCHLLR  +GL STEVVD+EEMV MFLH+LA++VKN
Sbjct: 61  CRESTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKN 110

[Close]
BLAST of PI0007077 vs. NCBI nr
Match: KAA0050301.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 15  MDPQEAARLLNVFTTSQRQLLMTLELLMNNHRRIQHTTYDARHRIRQLEYFCMIHESDLV 74
           M+ Q    +L VFT +QRQ+L+TLELLMN +RRI HT  D RHRIRQL YF MIHESDLV
Sbjct: 1   MNQQTLLGVLTVFTLAQRQILLTLELLMNYNRRITHTPSDTRHRIRQLAYFRMIHESDLV 60

Query: 75  CRQSTRMDRRCFAILCHLLRMTSGLGSTEVVDIEEMVVMFLHVLAYEVKN 125
           CRQSTRMD+R FAILCHLLR   GL STE+VDIEEMV MFLHVLAY VKN
Sbjct: 61  CRQSTRMDKRTFAILCHLLRTVYGLSSTEIVDIEEMVAMFLHVLAYNVKN 110

The following BLAST results are available for this feature:
BLAST of PI0007077 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007077 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VHB02.1e-3571.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UUT33.5e-3570.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U3B34.6e-3570.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BWN87.9e-3573.64Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TWH87.9e-3570.91Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0007077 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065736.14.3e-3571.82retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058874.17.3e-3570.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048777.19.5e-3570.91retrotransposon protein [Cucumis melo var. makuwa] >TYK31557.1 retrotransposon p... [more]
KAA0047510.11.6e-3470.91retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050301.11.6e-3473.64retrotransposon protein [Cucumis melo var. makuwa] >TYK03520.1 retrotransposon p... [more]
BLAST of PI0007077 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007077.1PI0007077.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding