PI0007036 (gene) Melon (PI 482460) v1

Overview
NamePI0007036
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr03: 9028953 .. 9029708 (-)
RNA-Seq ExpressionPI0007036
SyntenyPI0007036
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATAATAACAATAGAAATGCACCTCTGCCACAAGCTGCCCAAGAACCAAACACCGCCTACATGGCGCATGATGTGGACAGGCCAATTAGGTCATATGTTGCACCCAACCTCTACAACTTCAACCAAGGGATTGCCTACCCTGTGTTCGACGAAAATGCAAGATTTGAAATCAAGCCTGTAATGCTGCAGATGATTCAAAACGCCGGTCAGTTTGGCAGTCGTTCTGGGGAAGATCGACATGAGCACATTAGAAGTTTCTACTCTATCTGTGCTTCCTTCCATATGCTAGGCAACTCACTTGAAGAATTGAGATTCACACTTTCCCGTTAACTCTAAGGAATGAGGCAAAAATGTGGGCCAACGCCATGGAAGATGGCGAGGTGGGAACATGGGATAAATTAATAGAAAAATTTATGAAGAAATTTTCCCCACCTCACGAGAACGCCAAAAGAAGGTAGGAGCTCATGAGCTTTCAACAAAAAGATAGAGAGAACCTACATGACGCGTGGAGTAGGTTCAAGAGGATGGTAAAAAACATGCCCCCACAATGGCATTCCCAAATGCATATTGATGGAGGTGTTCTATTTTGGCTTGAACAAGACAACACAACAGACTGCTGATGCTATGTTTGTAGGTGGTATGTTGAAAAGCTCCTACAACCAAATTAAGGCAACACTGGACATGATGACCAATAATAATGAAGAATGGGAAAAAGATGATTTCGACAATTGTCGAGAAGGACGTGGATGA

mRNA sequence

ATGGAAAATAATAACAATAGAAATGCACCTCTGCCACAAGCTGCCCAAGAACCAAACACCGCCTACATGGCGCATGATGTGGACAGGCCAATTAGGTCATATGTTGCACCCAACCTCTACAACTTCAACCAAGGGATTGCCTACCCTGTGTTCGACGAAAATGCAAGATTTGAAATCAAGCCTGTAATGCTGCAGATGATTCAAAACGCCGGTGGTATGTTGAAAAGCTCCTACAACCAAATTAAGGCAACACTGGACATGATGACCAATAATAATGAAGAATGGGAAAAAGATGATTTCGACAATTGTCGAGAAGGACGTGGATGA

Coding sequence (CDS)

ATGGAAAATAATAACAATAGAAATGCACCTCTGCCACAAGCTGCCCAAGAACCAAACACCGCCTACATGGCGCATGATGTGGACAGGCCAATTAGGTCATATGTTGCACCCAACCTCTACAACTTCAACCAAGGGATTGCCTACCCTGTGTTCGACGAAAATGCAAGATTTGAAATCAAGCCTGTAATGCTGCAGATGATTCAAAACGCCGGTGGTATGTTGAAAAGCTCCTACAACCAAATTAAGGCAACACTGGACATGATGACCAATAATAATGAAGAATGGGAAAAAGATGATTTCGACAATTGTCGAGAAGGACGTGGATGA

Protein sequence

MENNNNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPVMLQMIQNAGGMLKSSYNQIKATLDMMTNNNEEWEKDDFDNCREGRG
Homology
BLAST of PI0007036 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1  MENNNNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIK 60
          M N NN+  P  QAAQ  N  Y+A D DRPIRSY +PNLY+FN GIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVMLQMIQNAG 72
           VMLQ+IQNAG
Sbjct: 61 LVMLQIIQNAG 71

BLAST of PI0007036 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.9e-15
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 5  NNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPVML 64
          NN+N P  Q  QE N AY+AHD+D+PI+SY +PNLY+FN GIAY  F EN  FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 65 QMIQNAG 72
           M QNAG
Sbjct: 62 YMTQNAG 68

BLAST of PI0007036 vs. ExPASy TrEMBL
Match: A0A5D3D4Y1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001280 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 21 AYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPVMLQM----IQNAGGMLKS 80
          AY+AHD+DR IRSY + N Y+FN GIAYPV  E+ RFEIK VM QM        GGML+S
Sbjct: 8  AYLAHDLDRLIRSYTSSNQYDFNPGIAYPVSGEDVRFEIKHVMPQMETADAVFVGGMLRS 67

Query: 81 SYNQIKATLDMMTNNNEE 95
          SYNQIK  L  M + +++
Sbjct: 68 SYNQIKTMLSAMASKSQK 85

BLAST of PI0007036 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MENNNNRNAPLPQAAQ-EPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEI 60
          M +N N   PL  A Q + N   +AH++D PIR+Y + NLY+FN GIAY VF ENA FE+
Sbjct: 1  MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 61 KPVMLQMIQNAG 72
          KPVMLQMIQ AG
Sbjct: 61 KPVMLQMIQKAG 72

BLAST of PI0007036 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 3   NNNNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPV 62
           + NN+ AP  QA Q  N  Y+AH+ DRPIRS  +PNLY FN GI YP F EN RF+IKPV
Sbjct: 37  SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63  MLQMI 68
           ML ++
Sbjct: 97  MLSLL 101

BLAST of PI0007036 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 1  MENNNNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIK 60
          M N NN+  P  QAAQ  N  Y+A D DRPIRSY +PNLY+FN GIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVMLQMIQNAG 72
           VMLQ+IQNAG
Sbjct: 61 LVMLQIIQNAG 71

BLAST of PI0007036 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 5  NNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPVML 64
          NN+N P  Q  QE N AY+AHD+D+PI+SY +PNLY+FN GIAY  F EN  FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 65 QMIQNAG 72
           M QNAG
Sbjct: 62 YMTQNAG 68

BLAST of PI0007036 vs. NCBI nr
Match: KAA0064228.1 (hypothetical protein E6C27_scaffold548G001790 [Cucumis melo var. makuwa] >TYK18598.1 hypothetical protein E5676_scaffold119G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-13
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 21 AYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPVMLQM----IQNAGGMLKS 80
          AY+AHD+DR IRSY + N Y+FN GIAYPV  E+ RFEIK VM QM        GGML+S
Sbjct: 8  AYLAHDLDRLIRSYTSSNQYDFNPGIAYPVSGEDVRFEIKHVMPQMETADAVFVGGMLRS 67

Query: 81 SYNQIKATLDMMTNNNEE 95
          SYNQIK  L  M + +++
Sbjct: 68 SYNQIKTMLSAMASKSQK 85

BLAST of PI0007036 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MENNNNRNAPLPQAAQ-EPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEI 60
          M +N N   PL  A Q + N   +AH++D PIR+Y + NLY+FN GIAY VF ENA FE+
Sbjct: 1  MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 61 KPVMLQMIQNAG 72
          KPVMLQMIQ AG
Sbjct: 61 KPVMLQMIQKAG 72

BLAST of PI0007036 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-12
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 3   NNNNRNAPLPQAAQEPNTAYMAHDVDRPIRSYVAPNLYNFNQGIAYPVFDENARFEIKPV 62
           + NN+ AP  QA Q  N  Y+AH+ DRPIRS  +PNLY FN GI YP F EN RF+IKPV
Sbjct: 37  SQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPV 96

Query: 63  MLQMI 68
           ML ++
Sbjct: 97  MLSLL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U71.3e-1767.61Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN87.9e-1562.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D4Y13.3e-1356.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN12.1e-1258.33Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CAB52.8e-1258.46Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
KAA0062403.12.7e-1767.61putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.11.6e-1462.69hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
KAA0064228.16.8e-1356.41hypothetical protein E6C27_scaffold548G001790 [Cucumis melo var. makuwa] >TYK185... [more]
TYK02149.14.4e-1258.33putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
TYK08803.15.8e-1258.46Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007036.1PI0007036.1mRNA