PI0007029 (gene) Melon (PI 482460) v1

Overview
NamePI0007029
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Locationchr11: 11118242 .. 11118556 (+)
RNA-Seq ExpressionPI0007029
SyntenyPI0007029
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCTATTTGGACCAAGAACAACAAGAACCAGAAGGAAAAGGAAAAAACATGCAAGATGCTGTGATGGTGAAGATGTTGTGAAGGTTGGCTTGATCCTCTTTATCGAAACTGTGATGGTGATTCTAAAGATGTTTATAAAAGACTATGGTAAGCTCTTATCAAGTTCTTTAATTCTGAAGTCTCTTCTAAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGAAGCTTCCATATCCAGATAGAAGGGAATGGAAGGTGGGTTTGAAGCTTTCAGATCCAGATGGAAGGGAATGGAATGTGAGTTTCACATAA

mRNA sequence

ATGCTGCTATTTGGACCAAGAACAACAAGAACCAGAAGGAAAAGGAAAAAACATGCAAGATGCTGTGATGGTGAAGATGTTGTGAAGGTTGGCTTGATCCTCTTTATCGAAACTGTGATGGTGATTCTAAAGATGTTTATAAAAGACTATGGTAAGCTCTTATCAAGTTCTTTAATTCTGAAGTCTCTTCTAAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGAAGCTTCCATATCCAGATAGAAGGGAATGGAAGGTGGGTTTGAAGCTTTCAGATCCAGATGGAAGGGAATGGAATGTGAGTTTCACATAA

Coding sequence (CDS)

ATGCTGCTATTTGGACCAAGAACAACAAGAACCAGAAGGAAAAGGAAAAAACATGCAAGATGCTGTGATGGTGAAGATGTTGTGAAGGTTGGCTTGATCCTCTTTATCGAAACTGTGATGGTGATTCTAAAGATGTTTATAAAAGACTATGGTAAGCTCTTATCAAGTTCTTTAATTCTGAAGTCTCTTCTAAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGAAGCTTCCATATCCAGATAGAAGGGAATGGAAGGTGGGTTTGAAGCTTTCAGATCCAGATGGAAGGGAATGGAATGTGAGTTTCACATAA

Protein sequence

MLLFGPRTTRTRRKRKKHARCCDGEDVVKVGLILFIETVMVILKMFIKDYGKLLSSSLILKSLLNPDGREWKVGLKLPYPDRREWKVGLKLSDPDGREWNVSFT
Homology
[Close]
BLAST of PI0007029 vs. ExPASy TrEMBL
Match: A0A5D3C119 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001830 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-07
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 23 DGEDVVKVGLILFIETVMVILKMFIKDYGKLLSSSLILKSLLNPDGREWKVGL 76
          + EDVVKV L  FI+TVM+ILKMFIKD+GKLLS  +I+  L   +GREWK GL
Sbjct: 16 NNEDVVKVALTFFIKTVMMILKMFIKDHGKLLSCFMIIVLL---NGREWKAGL 65

[Close]
BLAST of PI0007029 vs. NCBI nr
Match: TYK04964.1 (B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 23 DGEDVVKVGLILFIETVMVILKMFIKDYGKLLSSSLILKSLLNPDGREWKVGL 76
          + EDVVKV L  FI+TVM+ILKMFIKD+GKLLS  +I+  L   +GREWK GL
Sbjct: 16 NNEDVVKVALTFFIKTVMMILKMFIKDHGKLLSCFMIIVLL---NGREWKAGL 65

The following BLAST results are available for this feature:
BLAST of PI0007029 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007029 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C1197.6e-0764.15B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa ... [more]
BLAST of PI0007029 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04964.11.6e-0664.15B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa][more]
BLAST of PI0007029 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007029.1PI0007029.1mRNA