PI0007022 (gene) Melon (PI 482460) v1

Overview


Name	PI0007022
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 21832053 .. 21832625 (+)
RNA-Seq Expression	PI0007022
Synteny	PI0007022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTATGCCACCACGTACCAGCAGGCGACACAAGCAGAATCAGGACGGGACGCAGGATCCTACGCAGGCTCAGTTTAAGGGAGGATCCAGTACCCCAAGAGTTCAGACTGGGGCAATAAATGAGCAGTTTGCTAGAGCTGCACAGGAGATAGGTAGGCCAGAGAGAGCAGAGCCTAATGATCCAAAAAAGATGTACGGAATAGAACGACTGAAAAAGTTGGGAGACACAATGTTTGAGGGTACCACAGATCTGACTGACGCCGAGGTTTGGTTTAATATGCTTGAGAAATGTTTCGATGTTATGAGTTGTCCCGAGGAGCGAAAAGTCAAATTGGCCACATTCCTACTGTAGAAAGAGGCAGAGGGATGGTGTAAATCCATATTAGCTAGGCGCAGTGATGCACATACTTTAGGCTGGCAGACTTTTAGAGGCATATTTGAAGACAAGTATTATCCCAACACATACTTTGAGGCAAAGAGGGACGAGTTTCTGGGGTGGAAGCAGGGGTCACTTTCATTGGCTGAGTATGAAAAGAAGTATACCGAGCTTTCACGGTATGCGATGTGA

mRNA sequence

ATGGGAGTTATGCCACCACGTACCAGCAGGCGACACAAGCAGAATCAGGACGGGACGCAGGATCCTACGCAGGCTCAGTTTAAGGGAGGATCCAGTACCCCAAGAGTTCAGACTGGGGCAATAAATGAGCAGTTTGCTAGAGCTGCACAGGAGATAGGTAGGCCAGAGAGAGCAGAGCCTAATGATCCAAAAAAGATGTACGGAATAGAACGACTGAAAAAGTTGGGAGACACAATGTTTGAGGGTACCACAGATCTGACTGACGCCGAGGTTTGGTTTAATATGCTTGAGAAATGTTTCGATGTTATGAGTTGTCCCGAGGAGCGAAAAAGGGACGAGTTTCTGGGGTGGAAGCAGGGGTCACTTTCATTGGCTGAGTATGAAAAGAAGTATACCGAGCTTTCACGGTATGCGATGTGA

Coding sequence (CDS)

ATGGGAGTTATGCCACCACGTACCAGCAGGCGACACAAGCAGAATCAGGACGGGACGCAGGATCCTACGCAGGCTCAGTTTAAGGGAGGATCCAGTACCCCAAGAGTTCAGACTGGGGCAATAAATGAGCAGTTTGCTAGAGCTGCACAGGAGATAGGTAGGCCAGAGAGAGCAGAGCCTAATGATCCAAAAAAGATGTACGGAATAGAACGACTGAAAAAGTTGGGAGACACAATGTTTGAGGGTACCACAGATCTGACTGACGCCGAGGTTTGGTTTAATATGCTTGAGAAATGTTTCGATGTTATGAGTTGTCCCGAGGAGCGAAAAAGGGACGAGTTTCTGGGGTGGAAGCAGGGGTCACTTTCATTGGCTGAGTATGAAAAGAAGTATACCGAGCTTTCACGGTATGCGATGTGA

Protein sequence

MGVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERKRDEFLGWKQGSLSLAEYEKKYTELSRYAM

Homology

[Close]

BLAST of PI0007022 vs. ExPASy TrEMBL
Match: A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 102/137 (74.45%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+
Sbjct: 271 GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFVRTTQEIGRPDRVEPS 330

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERKRDEFLGWKQGS 121
           DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM+CPEERKRDEFLG KQGS
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 122 LSLAEYEKKYTELSRYA 139
           LS+ EYE+KYTELSRYA
Sbjct: 391 LSVVEYERKYTELSRYA 407

[Close]

BLAST of PI0007022 vs. ExPASy TrEMBL
Match: A0A5A7TI15 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00260 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 102/137 (74.45%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+
Sbjct: 271 GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFVRTTQEIGRPDRVEPS 330

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERKRDEFLGWKQGS 121
           DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM+CPEERKRDEFLG KQGS
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 122 LSLAEYEKKYTELSRYA 139
           LS+ EYE+KYTELSRYA
Sbjct: 391 LSVVEYERKYTELSRYA 407

[Close]

BLAST of PI0007022 vs. ExPASy TrEMBL
Match: A0A5A7VRP7 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00360 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.5e-46
Identity = 103/155 (66.45%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 3   VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPND 62
           VMPPRTSRR +QNQDG Q PTQ    G SST RV+ GA NEQF R AQEIGRPER EP+D
Sbjct: 38  VMPPRTSRRRRQNQDGMQGPTQGPSAGESSTLRVRGGAGNEQFVRTAQEIGRPERVEPSD 97

Query: 63  PKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER------------- 122
           PK+ YGIERLKKLG T+FEG+ D  +AE W NMLEKCFDVM+CPEER             
Sbjct: 98  PKRAYGIERLKKLGATVFEGSIDPANAENWLNMLEKCFDVMNCPEERKTFRGIFEDKYYP 157

Query: 123 ------KRDEFLGWKQGSLSLAEYEKKYTELSRYA 139
                 KRDEFLG KQGSLS+AEYE+K TELSRYA
Sbjct: 158 STYCEAKRDEFLGLKQGSLSVAEYERKNTELSRYA 192

[Close]

BLAST of PI0007022 vs. ExPASy TrEMBL
Match: A0A5A7UBY2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00020 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 103/154 (66.88%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 4   MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDP 63
           MPP TSRR +QNQD  Q PTQ Q  G +STPRV+ G  NEQFARAAQEIGR ERA+ NDP
Sbjct: 1   MPPCTSRRRRQNQDRMQGPTQGQSVGKTSTPRVRGGVGNEQFARAAQEIGRLERAKSNDP 60

Query: 64  KKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER-------------- 123
           +K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM CPE+R              
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPVDAENWLNMLEKCFDVMKCPEDRKTFRGIFEDKYYPS 120

Query: 124 -----KRDEFLGWKQGSLSLAEYEKKYTELSRYA 139
                KRDEFLG KQGSLS+AEYE+KYTELSRYA
Sbjct: 121 TYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYA 154

[Close]

BLAST of PI0007022 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 105/187 (56.15%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRTSRRHKQNQD TQDPTQ Q + GSSTPR Q  A +E+FAR+AQEIGRPER  P+
Sbjct: 103 GVMPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPS 162

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER------------ 121
           DP+KMYGIERLKKLG T+FEG+TD  +AEVW NMLEKCFDVM+CP++R            
Sbjct: 163 DPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKE 222

Query: 122 ---------------------------------------KRDEFLGWKQGSLSLAEYEKK 138
                                                  KRDEF   KQGSLS+AEYE+K
Sbjct: 223 AEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERK 282

[Close]

BLAST of PI0007022 vs. NCBI nr
Match: KAA0041696.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-49
Identity = 102/137 (74.45%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+
Sbjct: 271 GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFVRTTQEIGRPDRVEPS 330

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERKRDEFLGWKQGS 121
           DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM+CPEERKRDEFLG KQGS
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 122 LSLAEYEKKYTELSRYA 139
           LS+ EYE+KYTELSRYA
Sbjct: 391 LSVVEYERKYTELSRYA 407

[Close]

BLAST of PI0007022 vs. NCBI nr
Match: TYK06319.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-49
Identity = 102/137 (74.45%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRT RR +QNQDG Q PTQ    G SST  V+ GA NEQF R  QEIGRP+R EP+
Sbjct: 271 GVMPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFVRTTQEIGRPDRVEPS 330

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEERKRDEFLGWKQGS 121
           DP+K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM+CPEERKRDEFLG KQGS
Sbjct: 331 DPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKRDEFLGLKQGS 390

Query: 122 LSLAEYEKKYTELSRYA 139
           LS+ EYE+KYTELSRYA
Sbjct: 391 LSVVEYERKYTELSRYA 407

[Close]

BLAST of PI0007022 vs. NCBI nr
Match: KAA0067829.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-45
Identity = 103/155 (66.45%), Postives = 113/155 (72.90%), Query Frame = 0


Query: 3   VMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPND 62
           VMPPRTSRR +QNQDG Q PTQ    G SST RV+ GA NEQF R AQEIGRPER EP+D
Sbjct: 38  VMPPRTSRRRRQNQDGMQGPTQGPSAGESSTLRVRGGAGNEQFVRTAQEIGRPERVEPSD 97

Query: 63  PKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER------------- 122
           PK+ YGIERLKKLG T+FEG+ D  +AE W NMLEKCFDVM+CPEER             
Sbjct: 98  PKRAYGIERLKKLGATVFEGSIDPANAENWLNMLEKCFDVMNCPEERKTFRGIFEDKYYP 157

Query: 123 ------KRDEFLGWKQGSLSLAEYEKKYTELSRYA 139
                 KRDEFLG KQGSLS+AEYE+K TELSRYA
Sbjct: 158 STYCEAKRDEFLGLKQGSLSVAEYERKNTELSRYA 192

[Close]

BLAST of PI0007022 vs. NCBI nr
Match: KAA0051049.1 (uncharacterized protein E6C27_scaffold678G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-45
Identity = 103/154 (66.88%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 4   MPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPNDP 63
           MPP TSRR +QNQD  Q PTQ Q  G +STPRV+ G  NEQFARAAQEIGR ERA+ NDP
Sbjct: 1   MPPCTSRRRRQNQDRMQGPTQGQSVGKTSTPRVRGGVGNEQFARAAQEIGRLERAKSNDP 60

Query: 64  KKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER-------------- 123
           +K YGIERLKKLG T+FEG+TD  DAE W NMLEKCFDVM CPE+R              
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPVDAENWLNMLEKCFDVMKCPEDRKTFRGIFEDKYYPS 120

Query: 124 -----KRDEFLGWKQGSLSLAEYEKKYTELSRYA 139
                KRDEFLG KQGSLS+AEYE+KYTELSRYA
Sbjct: 121 TYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYA 154

[Close]

BLAST of PI0007022 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-44
Identity = 105/187 (56.15%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 2   GVMPPRTSRRHKQNQDGTQDPTQAQFKGGSSTPRVQTGAINEQFARAAQEIGRPERAEPN 61
           GVMPPRTSRRHKQNQD TQDPTQ Q + GSSTPR Q  A +E+FAR+AQEIGRPER  P+
Sbjct: 103 GVMPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPS 162

Query: 62  DPKKMYGIERLKKLGDTMFEGTTDLTDAEVWFNMLEKCFDVMSCPEER------------ 121
           DP+KMYGIERLKKLG T+FEG+TD  +AEVW NMLEKCFDVM+CP++R            
Sbjct: 163 DPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKE 222

Query: 122 ---------------------------------------KRDEFLGWKQGSLSLAEYEKK 138
                                                  KRDEF   KQGSLS+AEYE+K
Sbjct: 223 AEGWWKSIIARRNDARTLDWQTFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERK 282

The following BLAST results are available for this feature:

BLAST of PI0007022 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7J1	1.7e-49	74.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59...	[more]
A0A5A7TI15	1.7e-49	74.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7VRP7	8.5e-46	66.45	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7UBY2	1.9e-45	66.88	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BMJ4	1.2e-44	56.15	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0007022 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041696.1	3.4e-49	74.45	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK06319.1	3.4e-49	74.45	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0067829.1	1.8e-45	66.45	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0051049.1	3.9e-45	66.88	uncharacterized protein E6C27_scaffold678G00020 [Cucumis melo var. makuwa]	[more]
TYK01041.1	2.5e-44	56.15	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]

BLAST of PI0007022 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007022.1	PI0007022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding