PI0007007 (gene) Melon (PI 482460) v1

Overview


Name	PI0007007
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr11: 13322313 .. 13323230 (-)
RNA-Seq Expression	PI0007007
Synteny	PI0007007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTGGGTGCGACCTTCCTTTGGAAAGTGTTTGTATGGATCAATAACAAGGTAAATATGGAAAGTGTTCATGGTAAGGGGGAGAAGAACGCATGTCAACGTATCCTACGGTCTCCTACATTATGTTACACCATGAGATTTCTATGATTTGCTTGTGTGTCGTCTCCTAGAGCGATCATCCCTTTGAAAGGCCTGATCATAGAAGTTAGAACAACACAAACTTCAGAAATGGATAGGATTTCTTAGGTTAATCTTCAACAATTGTCTTTCCTAACGGTAGCCTGTTGAAACGTACCTATGGGATCTGAAAATGGTAAGGTCACATTTACAGGATAAATTAAGTCAGTTAATGAATCATTGACCAAACAACGGTAGCTAAGAACTATAGGAATACGAGTTATTCTAGTATTAGTAATTAGCTGAGATTATCTCAATTCAGGAGAGAAGTAGTTGATCACCCTTTGGTGACTGTTGCTTTAAACTTCTAAAGTATCGTTGCAAAAACTAAATCACTTTTTTATTAGGGTTTGATTGTTTATTTTTGTTGAGTTGATTAGATTTTTATGTAATGGGTTAAGGCAAAGATAACTAATACGGTCAATTTTTTGTTTTTAGCAAGTCTTCCTTTATTATTGCACTGCTAAAAAACGAAAAGTTAATTGGTGAAAATTATGCGATGTGGAAGTCAAACCTGAATATGATTCTGGTTATTGATGATCTACTCTTTGTCTTAATGGAAGCATGTCCTCTTTTCTCTACTCGAAATGCATCCCAAACTGTCAAGGATGCGTATTACCGTTGGACAAAGGCCAATGACAAGACTCGTATCTACATCTTGGCCAGTGTGCTTGATGTACTGAGCAAGAAGCATGAGGTCATGGTCACTGCACATCAGATCATGGACTCCCTCTAG

mRNA sequence

ATGTCGTCCTGGGTGCGACCTTCCTTTGGAAAGTGTTTGTATGGATCAATAACAAGCAAGTCTTCCTTTATTATTGCACTGCTAAAAAACGAAAAGTTAATTGGTGAAAATTATGCGATGTGGAAGTCAAACCTGAATATGATTCTGGTTATTGATGATCTACTCTTTGTCTTAATGGAAGCATGTCCTCTTTTCTCTACTCGAAATGCATCCCAAACTGTCAAGGATGCGTATTACCGTTGGACAAAGGCCAATGACAAGACTCGTATCTACATCTTGGCCAGTGTGCTTGATGTACTGAGCAAGAAGCATGAGGTCATGGTCACTGCACATCAGATCATGGACTCCCTCTAG

Coding sequence (CDS)

ATGTCGTCCTGGGTGCGACCTTCCTTTGGAAAGTGTTTGTATGGATCAATAACAAGCAAGTCTTCCTTTATTATTGCACTGCTAAAAAACGAAAAGTTAATTGGTGAAAATTATGCGATGTGGAAGTCAAACCTGAATATGATTCTGGTTATTGATGATCTACTCTTTGTCTTAATGGAAGCATGTCCTCTTTTCTCTACTCGAAATGCATCCCAAACTGTCAAGGATGCGTATTACCGTTGGACAAAGGCCAATGACAAGACTCGTATCTACATCTTGGCCAGTGTGCTTGATGTACTGAGCAAGAAGCATGAGGTCATGGTCACTGCACATCAGATCATGGACTCCCTCTAG

Protein sequence

MSSWVRPSFGKCLYGSITSKSSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYRWTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL

Homology

[Close]

BLAST of PI0007007 vs. ExPASy TrEMBL
Match: A0A5A7USZ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006070 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 22  SFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYRW 81
           S IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T+ ASQ+V+DAY RW
Sbjct: 3   SSIIALLKKDQLTGENYATWKSKLNMILVIADLSFVLMEECPPFPTKYASQSVRDAYDRW 62

Query: 82  TKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           TKANDK R++ILAS+ D+LSKKHE+MVTAHQIMDSL
Sbjct: 63  TKANDKARLHILASMFDILSKKHEIMVTAHQIMDSL 98

[Close]

BLAST of PI0007007 vs. ExPASy TrEMBL
Match: A0A5A7VAN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00280 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYAMWKS LNMILVI DL FVL+E CP   T+NASQ+V+DAY  
Sbjct: 2   SSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPLPTKNASQSVRDAYDC 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R+YIL S+ D+LSKKHE+MVTAHQIMDSL
Sbjct: 62  WTKANDKARLYILTSMSDILSKKHEIMVTAHQIMDSL 98

[Close]

BLAST of PI0007007 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.5e-31
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

[Close]

BLAST of PI0007007 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.5e-31
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

[Close]

BLAST of PI0007007 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.5e-31
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

[Close]

BLAST of PI0007007 vs. NCBI nr
Match: KAA0058278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.6e-31
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 22  SFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYRW 81
           S IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T+ ASQ+V+DAY RW
Sbjct: 3   SSIIALLKKDQLTGENYATWKSKLNMILVIADLSFVLMEECPPFPTKYASQSVRDAYDRW 62

Query: 82  TKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           TKANDK R++ILAS+ D+LSKKHE+MVTAHQIMDSL
Sbjct: 63  TKANDKARLHILASMFDILSKKHEIMVTAHQIMDSL 98

[Close]

BLAST of PI0007007 vs. NCBI nr
Match: KAA0064290.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK01026.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-31
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYAMWKS LNMILVI DL FVL+E CP   T+NASQ+V+DAY  
Sbjct: 2   SSSIIALLKKDQLTGENYAMWKSKLNMILVIADLRFVLIEECPPLPTKNASQSVRDAYDC 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R+YIL S+ D+LSKKHE+MVTAHQIMDSL
Sbjct: 62  WTKANDKARLYILTSMSDILSKKHEIMVTAHQIMDSL 98

[Close]

BLAST of PI0007007 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

[Close]

BLAST of PI0007007 vs. NCBI nr
Match: TYK16041.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

[Close]

BLAST of PI0007007 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 21  SSFIIALLKNEKLIGENYAMWKSNLNMILVIDDLLFVLMEACPLFSTRNASQTVKDAYYR 80
           SS IIALLK ++L GENYA WKS LNMILVI DL FVLME CP F T++ASQ+V+DAY R
Sbjct: 2   SSSIIALLKKDQLTGENYATWKSKLNMILVIVDLSFVLMEECPPFPTKHASQSVRDAYDR 61

Query: 81  WTKANDKTRIYILASVLDVLSKKHEVMVTAHQIMDSL 118
           WTKANDK R++ILAS+ D+LSKKHE+MVTA QIMDSL
Sbjct: 62  WTKANDKARLHILASMSDILSKKHEIMVTARQIMDSL 98

The following BLAST results are available for this feature:

BLAST of PI0007007 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USZ2	2.2e-31	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G0060...	[more]
A0A5A7VAN8	3.8e-31	74.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G0028...	[more]
A0A5A7TZD0	8.5e-31	74.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	8.5e-31	74.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	8.5e-31	74.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of PI0007007 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058278.1	4.6e-31	75.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0064290.1	7.9e-31	74.23	gag/pol protein [Cucumis melo var. makuwa] >TYK01026.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	1.8e-30	74.23	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK16041.1	1.8e-30	74.23	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04171.1	1.8e-30	74.23	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0007007 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007007.1	PI0007007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding