Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA
mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA
Coding sequence (CDS)
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA
Protein sequence
MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEKEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTFGLL
Homology
BLAST of PI0007003 vs. ExPASy TrEMBL
Match:
A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
BLAST of PI0007003 vs. ExPASy TrEMBL
Match:
A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
BLAST of PI0007003 vs. ExPASy TrEMBL
Match:
A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)
HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRF L+EECP P NA++TV++AY+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60
Query: 61 RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
RW KANEK + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61 RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120
Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167
BLAST of PI0007003 vs. ExPASy TrEMBL
Match:
A0A5A7V5A8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00150 PE=4 SV=1)
HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRF L+EECP P NA++TV++AY+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60
Query: 61 RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
RW KANEK + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61 RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120
Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167
BLAST of PI0007003 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP P NA++TV++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
RW KANEK EMFGQ S QI+H+A+KY+YNA
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RM EG SVREHVL+MMV FN+AEMN VIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
BLAST of PI0007003 vs. NCBI nr
Match:
KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
BLAST of PI0007003 vs. NCBI nr
Match:
TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180
BLAST of PI0007003 vs. NCBI nr
Match:
TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRF L+EECP P NA++TV++AY+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60
Query: 61 RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
RW KANEK + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61 RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120
Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167
BLAST of PI0007003 vs. NCBI nr
Match:
KAA0062798.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRF L+EECP P NA++TV++AY+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60
Query: 61 RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
RW KANEK + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61 RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120
Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167
BLAST of PI0007003 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 221.9 bits (564), Expect = 4.2e-54
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 0
Query: 1 MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
M+S+ + +L +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP P NA++TV++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
RW KANEK EMFGQ S QI+H+A+KY+YNA
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
RM EG SVREHVL+MMV FN+AEMN VIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D0D9 | 2.5e-60 | 67.19 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210... | [more] |
| A0A5A7VA67 | 2.5e-60 | 67.19 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011... | [more] |
| A0A5D3BE74 | 4.1e-55 | 65.87 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049... | [more] |
| A0A5A7V5A8 | 4.1e-55 | 65.87 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0015... | [more] |
| A0A5A7SMH8 | 2.0e-54 | 59.38 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
