PI0006843 (gene) Melon (PI 482460) v1

Overview


Name	PI0006843
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr02: 6124888 .. 6125517 (-)
RNA-Seq Expression	PI0006843
Synteny	PI0006843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCATTCGCTCTCTTACTTTTTCTCTCTATAATTCTCTCTCTCTCTCTCTCTAACTATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCCCCGGACTTCATCTCCGGTGAGGATCCATCTCAGATCTTGGACTTCTCCATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGAAGCTACTGCAAATGCTGCTGCCACCGCCACCGTCACCGTCACCGCACTTCAGCGGTCAAAGAATCCCGCCGGTCAGGATGGCTCCGGCGCCGGTCACTTCCCTCAGCTTCCGAAAACGGCGCCGTCTACTTGAACACAACTTTCTATCTGTCTTCAAACTTTTTTTTTCTTTTTTAGTTTAATTTTCTCTCTCTAGATTTCATGTCTTTGGAATGTTAGTTTTTTTTTTTCTTTTTCTTTTAGGTCAATGAGAGATCCTTTCTCTCTTTTATCTCAAACCCAAAAATAAATTTGATGAAATGGAAGAAGGGTTGTTCATGTGGTTTCATCTCCAAATTTATGTGTAGTTTTAGTAGATAAAACATAATTACTCTCTTTTAAATTGATAATTGTAAATATGGTAATTAATTACTTTTTGCATATCTATGAAAA

mRNA sequence

TTTTCATTCGCTCTCTTACTTTTTCTCTCTATAATTCTCTCTCTCTCTCTCTCTAACTATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCCCCGGACTTCATCTCCGGTGAGGATCCATCTCAGATCTTGGACTTCTCCATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGAAGCTACTGCAAATGCTGCTGCCACCGCCACCGTCACCGTCACCGCACTTCAGCGGTCAAAGAATCCCGCCGGTCAGGATGGCTCCGGCGCCGGTCACTTCCCTCAGCTTCCGAAAACGGCGCCGTCTACTTGAACACAACTTTCTATCTGTCTTCAAACTTTTTTTTTCTTTTTTAGTTTAATTTTCTCTCTCTAGATTTCATGTCTTTGGAATGTTAGTTTTTTTTTTTCTTTTTCTTTTAGGTCAATGAGAGATCCTTTCTCTCTTTTATCTCAAACCCAAAAATAAATTTGATGAAATGGAAGAAGGGTTGTTCATGTGGTTTCATCTCCAAATTTATGTGTAGTTTTAGTAGATAAAACATAATTACTCTCTTTTAAATTGATAATTGTAAATATGGTAATTAATTACTTTTTGCATATCTATGAAAA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCCCCGGACTTCATCTCCGGTGAGGATCCATCTCAGATCTTGGACTTCTCCATCGGAGTCGCCGGTGCTGTTTCCGGCCAACCCCATCAGCCATCTGAAGCTACTGCAAATGCTGCTGCCACCGCCACCGTCACCGTCACCGCACTTCAGCGGTCAAAGAATCCCGCCGGTCAGGATGGCTCCGGCGCCGGTCACTTCCCTCAGCTTCCGAAAACGGCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVAGAVSGQPHQPSEATANAAATATVTVTALQRSKNPAGQDGSGAGHFPQLPKTAPST

Homology

[Close]

BLAST of PI0006843 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.8e-34
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVAGAVSGQPHQPSEATANAAATATVTV 60
          MPRPRHQRQLSQVLPPDFIS EDPSQILDFSIGVAGAVSGQPHQPS+ATANAAA A    
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 TALQRSKNPAGQDGSGAGHFPQLPKTAPST 91
          T LQRSKNPAGQ+GSGAGHF QLPKTAPST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]

BLAST of PI0006843 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 5.9e-34
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVAGAVSGQPHQPSEATANAAATATVTV 60
          MPRPRHQRQLSQVLPPDFIS EDPSQILDFSIGVAGAVSGQPHQPS+ATANAAA A    
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 TALQRSKNPAGQDGSGAGHFPQLPKTAPST 91
          T LQRSKNPAGQ+GSGAGHF QLPKTAPST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]

BLAST of PI0006843 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 62/92 (67.39%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVAGAVSGQPHQPSEATANAAATATVTV 60
          MPRPRHQRQ SQVLPP+ ISG DPSQILDF   VA  VSGQPH+ +EA  N A  A V  
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAV-- 60

Query: 61 TALQRSKNPAGQD--GSGAGHFPQLPKTAPST 91
            LQRSK   GQ+  GSG+GHFPQLPKT PST
Sbjct: 61 --LQRSKTSGGQEGSGSGSGHFPQLPKTPPST 88

[Close]

BLAST of PI0006843 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 59/91 (64.84%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDFISGEDPSQILDFSIGVAGAVSGQPHQ--PSEATANAAATATV 60
          MPRPRH RQ SQVLPP+ ISGEDPSQILDF   VAGA SGQPHQ  P  A A AAA    
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 TVTALQRSKNPAGQDGSGAGHFPQLPKTAPS 90
            T +Q+SK  A Q+ SGA  FPQL KT PS
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPS 91

The following BLAST results are available for this feature:

BLAST of PI0006843 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0A1	2.8e-34	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1	[more]

BLAST of PI0006843 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66547.1	5.9e-34	88.89	hypothetical protein Csa_007065 [Cucumis sativus]	[more]
KAG6590166.1	4.4e-21	67.39	hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588222.1	2.0e-18	64.84	hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006843 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006843.1	PI0006843.1	mRNA