PI0006797 (gene) Melon (PI 482460) v1

Overview


Name	PI0006797
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	glycine-rich RNA-binding protein-like
Location	chr11: 27405583 .. 27407299 (+)
RNA-Seq Expression	PI0006797
Synteny	PI0006797

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAACCCTAAAACTAACCCTAGTTAAATCTCCCTTCTATATAAGAAACCCTAAACTTCTTCCCCATTTCATTCATTCTACTCTTCTATTAGGGTTCTTTTCCTTCTCATTTCAATGGCTTCCTCCTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATGTGGTGATATCGTTGAAGCCAAGGTCCGTTTGACGTCGAGATCTGGATTTGTTCCGAATCGGCTTTCTCCATCCTTAATCTGATCTCTCAATCTGTGACTGTTTTGTGTTACTTTACTACTACTACTACTCTTGATATCTGTTACTTTTATTACTCTCCTTTAATCGGTACGTTTACCTTCATCTTGTTTACAGAGACGAAGAACGATCGGTTTCTTTTCTTTTTGTTGTTTTTTGGGTTGCGTCTGTGTTAATTGGTTTTGTTCTGTGACTGATCTTGTGTTTCCTTGATTTTTTCATAAGATCGTTTGCGATCGTGAAACCGGAAGGTCGAGAGGATTTGGATTCGTGACGTTTTCGGAGGAGGATGCTATGAGAACTGCTATTGAATCAATGAATGGTCATATTCTTGATGGGCGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGCGGTGGTGGTTACAACCGTGGTGGAGGTGGTGGAGGTGGATACGGTGGGCGTCGTGACGGAGGAGGAGGTGGAGGATTCAACCGTGGTGGTGGCGGTTACGGAGGAGGAGGTGGTGGTTACGGAGGAGGTGGTGGTTACGGTGGTGGACGTGATCGTGGTTATGGAGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAGATGGGGGGTTTATGATTTTTTTTTTAGCTTTTGGTTTCGACGTATTAGTGTGATGATGATAAGAAAAATCTTAGCAGGATCTTTTCTTTCGTTTTCATTTTGTGGCTTTGTTCCTGTTCCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCCGATCTATGTTACCGATGATGAAAAAAATTACATAAGAAAATGAAGTACAGATCTTCGTTCTCGCACATCTTTTTTCTTCTTTTATCCTTCATTATCTCCATTATTGAATTTTCCGCCATGGTCAACGTATTCTTCCTCCGAAAATTGAATACCAAGTGCAATATAACCTTATCTCAACATGATTGATGGTATTAAATATTTTCCTTGTTTTGAAGAAAAATGGTTGGTTGTTGTTTTGATCTAATCCTTTTGACAGCTGGACAATAAATAATATCTTGGTAGATATTTTCATTTGTTAGAGATATTTTTATGCAATTATTTGGGCTTTTTGGGTGGGCCCAGTATTGGTCCGCCATGTGGTAAAATGGAATCTGAATATTAATTTTTCGGAATATTCGTTTATTTTATTTATGTATTTTGTCGTTTTGTTGGGATCGTGGGAATACTGTGGGCCTTTGCTTTTGTGACTTCTCACATGGGCCTGACTTTATTGGGCCGTGTTTTAAGTTAAAAAGTTGATCCTCTCTATATCTTGTCAGATTTTGTAATTATTTTATTTTGGTGGAAAGATTTGTAATTATTGTATTTGTTTCGTTATTTTGTATGCTTTTTAATATTAATATATTTTGCCCTTTAACCGAA

mRNA sequence

AGCAAACCCTAAAACTAACCCTAGTTAAATCTCCCTTCTATATAAGAAACCCTAAACTTCTTCCCCATTTCATTCATTCTACTCTTCTATTAGGGTTCTTTTCCTTCTCATTTCAATGGCTTCCTCCTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATGTGGTGATATCGTTGAAGCCAAGATCGTTTGCGATCGTGAAACCGGAAGGTCGAGAGGATTTGGATTCGTGACGTTTTCGGAGGAGGATGCTATGAGAACTGCTATTGAATCAATGAATGGTCATATTCTTGATGGGCGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGCGGTGGTGGTTACAACCGTGGTGGAGGTGGTGGAGGTGGATACGGTGGGCGTCGTGACGGAGGAGGAGGTGGAGGATTCAACCGTGGTGGTGGCGGTTACGGAGGAGGAGGTGGTGGTTACGGAGGAGGTGGTGGTTACGGTGGTGGACGTGATCGTGGTTATGGAGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAGATGGGGGGTTTATGATTTTTTTTTTAGCTTTTGGTTTCGACGTATTAGTGTGATGATGATAAGAAAAATCTTAGCAGGATCTTTTCTTTCGTTTTCATTTTGTGGCTTTGTTCCTGTTCCGTTTGGGTGCTCTCTTTTTTGACCGATTACCGATGGGTTTCGTGTTCCGATCTATGTTACCGATGATGAAAAAAATTACATAAGAAAATGAAGTACAGATCTTCGTTCTCGCACATCTTTTTTCTTCTTTTATCCTTCATTATCTCCATTATTGAATTTTCCGCCATGGTCAACGTATTCTTCCTCCGAAAATTGAATACCAAGTGCAATATAACCTTATCTCAACATGATTGATGGTATTAAATATTTTCCTTGTTTTGAAGAAAAATGGTTGGTTGTTGTTTTGATCTAATCCTTTTGACAGCTGGACAATAAATAATATCTTGGTAGATATTTTCATTTGTTAGAGATATTTTTATGCAATTATTTGGGCTTTTTGGGTGGGCCCAGTATTGGTCCGCCATGTGGTAAAATGGAATCTGAATATTAATTTTTCGGAATATTCGTTTATTTTATTTATGTATTTTGTCGTTTTGTTGGGATCGTGGGAATACTGTGGGCCTTTGCTTTTGTGACTTCTCACATGGGCCTGACTTTATTGGGCCGTGTTTTAAGTTAAAAAGTTGATCCTCTCTATATCTTGTCAGATTTTGTAATTATTTTATTTTGGTGGAAAGATTTGTAATTATTGTATTTGTTTCGTTATTTTGTATGCTTTTTAATATTAATATATTTTGCCCTTTAACCGAA

Coding sequence (CDS)

ATGGCTTCCTCCTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCTCTCCATGTGGTGATATCGTTGAAGCCAAGATCGTTTGCGATCGTGAAACCGGAAGGTCGAGAGGATTTGGATTCGTGACGTTTTCGGAGGAGGATGCTATGAGAACTGCTATTGAATCAATGAATGGTCATATTCTTGATGGGCGTAATATTACCGTTAACGAGGCGCAGCAAAGAGGTGGAGGAGGCGGTGGTGGTTACAACCGTGGTGGAGGTGGTGGAGGTGGATACGGTGGGCGTCGTGACGGAGGAGGAGGTGGAGGATTCAACCGTGGTGGTGGCGGTTACGGAGGAGGAGGTGGTGGTTACGGAGGAGGTGGTGGTTACGGTGGTGGACGTGATCGTGGTTATGGAGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGTGGCGGTGGATCTGAAGGTGGATGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN

Homology

[Close]

BLAST of PI0006797 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-33
Identity = 112/175 (64.00%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MA++ VEYRCFVGGLAWAT + +LE AF+  G+I+++K++ DRETGRSRGFGFVTFS E+
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGY-GGRRDGGGGGGFNR 120
           +M  AIE+MNG  LDGRNITVN+AQ RGGGGGGG   GG GGGGY GGRRDGG G     
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYG----- 120

Query: 121 GGGGYG----GGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN 171
           GGGGYG    GGGGGYGGGGGYGG R+ G             GGG GG  GGWR+
Sbjct: 121 GGGGYGGRREGGGGGYGGGGGYGGRREGG-------------GGGYGGGGGGWRD 157

[Close]

BLAST of PI0006797 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-32
Identity = 113/165 (68.48%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMR 63
           + VEYRCFVGGLAWAT+  +LE+AFS  GDI ++KI+ DRETGRSRGFGFVTF +E +MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  TAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGG----GGGGGYGGRRDGGGGGGFNR 123
            AIE MNG  LDGRNITVNEAQ RG GGGGG   GG    GGGGGYGGRR+GGGGGG+  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGY-- 121

Query: 124 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGS 165
           GG   GGGGG  GGGGGYGG R+     GGDGG     GGGGGGS
Sbjct: 122 GGRREGGGGGYGGGGGGYGGRRE-----GGDGG----YGGGGGGS 155

[Close]

BLAST of PI0006797 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-32
Identity = 118/181 (65.19%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MAS  VEYRCFVGGLAWATD  ALE AF+  GD++++KI+ DRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGG------GGGGGY-GGRRDGGG 120
           AM+ AIE MNG  LDGR+ITVNEAQ RG GGGGG+  GG      GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGFNRGGGGYGGGGGGY----GGGGGYGGGRDRGYG--GGGDGGSRYSRGGGGGGSEGG 169
           GGG   GGGGY GGGGGY    GGGG YGGGR  G G  GGG+GG     G GG G  GG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGG 176

[Close]

BLAST of PI0006797 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 109/166 (65.66%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMR 63
           + VEYRCFVGGL WATD  +L+ AFS  GD++++KI+ DRETGRSRGFGFVTF+ ++AMR
Sbjct: 2   ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61

Query: 64  TAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRGGGG 123
            AIE+MNG  LDGRNITVNEAQ R   GGGG+   GGGGGGYGG+R  GGGGG+  GGGG
Sbjct: 62  QAIEAMNGQDLDGRNITVNEAQSRRSDGGGGF---GGGGGGYGGQRREGGGGGYGGGGGG 121

Query: 124 YGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWR 170
           YGGG  G GGG G   G   GYGGGG GG   SRGG GGG+   WR
Sbjct: 122 YGGGRSGGGGGYGSRDGGGGGYGGGG-GGYGGSRGGSGGGN---WR 160

[Close]

BLAST of PI0006797 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 117/177 (66.10%), Postives = 128/177 (72.32%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MAS  VEYRCFVGGLAWATD  +LE AFS  G++V++KI+ DRETGRSRGFGFVTF +E 
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGG---GGGGYGGRRDGGGGGGF 120
           +M+ AIE MNG  LDGR+ITVNEAQ RG G GGG   GGG   GGGGYGG   GGG GG 
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGG--GGGGYGGG 120

Query: 121 NRGGGGYGGGGGGY----GGGGGYGGG--RDRGYGGGGDGGSRYSRGGGGGGSEGGW 169
            R GGGY GGGGGY    GGGGGYGGG  RD G  GGG+G      GG GGG  GGW
Sbjct: 121 RREGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEG------GGYGGGGGGGW 169

[Close]

BLAST of PI0006797 vs. ExPASy TrEMBL
Match: A0A1S3CE16 (glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATDSNALEKAFSP GDIVEAKIV DRETGRSRGFGFVTFSEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRG 120
           AMR+AIE+MNGHILDGRNITVNEAQQRGGGGGGG    GGGGGGYGGRRDGGGGGGF+RG
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRG 120

Query: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGD-GGSRYSRGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGGYGGGRDRGYGGGG  GG R +RGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of PI0006797 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.9e-57
Identity = 153/174 (87.93%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF EED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNR-GGGGGGGYGGRRDGGGGGGFNR 120
           +MR+AIE+MNG  LDGR+ITVNEAQQRGGGGGGGYNR GGGGGGGYGGRR+GGGGGG+NR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSR---GGGGGGSEGGWRN 171
           GGGGYGGGGGGY GGGGYGGGRDRGYGGGGDGGSRY+R   GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGY-GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of PI0006797 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.5e-55
Identity = 151/174 (86.78%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQR--GGGGGGGYNRGGGGGGGYGGRRDGGGGGGFN 120
           AMR+AIE+MNG  LDGR+ITVNEAQQR  GGGGGGGYNRGGGGGGGYGGRR+GGGGGG+N
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDG-GSRYSR-GGGGGGSEGGWRN 171
           RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGG G G RY R GGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of PI0006797 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-52
Identity = 149/173 (86.13%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQR-GGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNR 120
           AMR+AIE+MNG  LDGR+ITVNEAQQR GGGGGGGYNRGGGGGGGYGGRR+ GGGGG+NR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDG-GSRYSR-GGGGGGSEGGWRN 171
           GGGGYGGGGGGY GGGGYGGGRDRGYGGGG G G RY R GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGY-GGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of PI0006797 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.4e-52
Identity = 149/174 (85.63%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF EED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNR---GGGGGGGYGGRRDGGGGGGF 120
           +MR+AIE+MNG  LDGR+ITVNEAQQRGGGGGGGYNR   GGGGGGGYGGRR+ GGGGG+
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 NRGGGGYGGGGGGYG-GGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN 171
           NRGGGGYG GGGG G GGGGYGGGRDRGY GGGDGGSRY+R GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY-GGGDGGSRYNR-GGGGGSEGGWRN 171

[Close]

BLAST of PI0006797 vs. NCBI nr
Match: XP_008460935.1 (PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 6.9e-60
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATDSNALEKAFSP GDIVEAKIV DRETGRSRGFGFVTFSEED
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRG 120
           AMR+AIE+MNGHILDGRNITVNEAQQRGGGGGGG    GGGGGGYGGRRDGGGGGGF+RG
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRG 120

Query: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGD-GGSRYSRGGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGGGYGGGRDRGYGGGG  GG R +RGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of PI0006797 vs. NCBI nr
Match: XP_022943401.1 (glycine-rich RNA-binding protein-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-56
Identity = 153/174 (87.93%), Postives = 163/174 (93.68%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF EED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNR-GGGGGGGYGGRRDGGGGGGFNR 120
           +MR+AIE+MNG  LDGR+ITVNEAQQRGGGGGGGYNR GGGGGGGYGGRR+GGGGGG+NR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSR---GGGGGGSEGGWRN 171
           GGGGYGGGGGGY GGGGYGGGRDRGYGGGGDGGSRY+R   GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGY-GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of PI0006797 vs. NCBI nr
Match: KAG6571119.1 (hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-55
Identity = 153/173 (88.44%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF EED
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNR-GGGGGGGYGGRRD-GGGGGGFN 120
           +MR+AIE+MNG  LDGR+ITVNEAQQRGGGGGGGYNR GGGGGGGYGGRR+ GGGGGG+N
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSR-GGGGGGSEGGWRN 171
           RGGGGYGGGGGGY GGGGYGGGRDRGYGGGGDGGSRY+R GGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGSEGGWRN 172

[Close]

BLAST of PI0006797 vs. NCBI nr
Match: XP_023006868.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-55
Identity = 151/174 (86.78%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF +E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQR--GGGGGGGYNRGGGGGGGYGGRRDGGGGGGFN 120
           AMR+AIE+MNG  LDGR+ITVNEAQQR  GGGGGGGYNRGGGGGGGYGGRR+GGGGGG+N
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDG-GSRYSR-GGGGGGSEGGWRN 171
           RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGG G G RY R GGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of PI0006797 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-54
Identity = 149/171 (87.13%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MASSSVEYRCFVGGLAWATD++ALEKAFS  G+IVEAKIV DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRG 120
           +MR+AIE+MNG  LDGR+ITVNEAQQRGGGGGGGYNRGGGGGGGYGGRR+ GGGGG+NRG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSR-GGGGGGSEGGWRN 171
           GGGYGGGGGGYGGGG  GGGRDRGY GGGDGGSRY+R GGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGGRDRGY-GGGDGGSRYNRGGGGGGGSEGGWRN 169

[Close]

BLAST of PI0006797 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-33
Identity = 118/181 (65.19%), Postives = 129/181 (71.27%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MAS  VEYRCFVGGLAWATD  ALE AF+  GD++++KI+ DRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGG------GGGGGY-GGRRDGGG 120
           AM+ AIE MNG  LDGR+ITVNEAQ RG GGGGG+  GG      GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGFNRGGGGYGGGGGGY----GGGGGYGGGRDRGYG--GGGDGGSRYSRGGGGGGSEGG 169
           GGG   GGGGY GGGGGY    GGGG YGGGR  G G  GGG+GG     G GG G  GG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGG 176

[Close]

BLAST of PI0006797 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 115/171 (67.25%), Postives = 128/171 (74.85%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEED 60
           MAS  VEYRCFVGGLAWATD  ALE AF+  GD++++KI+ DRETGRSRGFGFVTF +E 
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRTAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRG 120
           AM+ AIE MNG  LDGR+ITVNEAQ RG GGGGG+ RGGG  GG GGRR+  GGGG++ G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH-RGGGSYGGGGGRRE--GGGGYSGG 120

Query: 121 GGGY---GGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGW 169
           GGGY   GGGGG YGGG   GGG   GYGGG  GG     GG GGG  GGW
Sbjct: 121 GGGYSSRGGGGGSYGGGRREGGG---GYGGGEGGG----YGGSGGG--GGW 159

[Close]

BLAST of PI0006797 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 124.8 bits (312), Expect = 6.7e-29
Identity = 109/170 (64.12%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMR 63
           S VEYRCFVGGLAWAT+   L++ FS  GD++++KI+ DRE+GRSRGFGFVTF +E AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  TAIESMNGHILDGRNITVNEAQQRG--------GGGGGGYNRGGGGG--GGYGGRRDGGG 123
            AIE MNG  LDGR ITVNEAQ RG        GG GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGFNRGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGG 164
           GGG+ R  GGYG GGGG G G G GG R+ G  GGGDGG   S GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGG---SYGGGGGG 168

[Close]

BLAST of PI0006797 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 86/129 (66.67%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMR 63
           S VEYRCFVGGLAWAT+   L++ FS  GD++++KI+ DRE+GRSRGFGFVTF +E AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  TAIESMNGHILDGRNITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRGGGG 123
            AIE MNG  LDGR ITVNEAQ RG GGG     GGG GG  GG R GGGGG    GGGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGG-----GGGRGGSGGGYRSGGGGGYSGGGGGG 121

Query: 124 YGGGGGGYG 133
           Y GGGGG G
Sbjct: 122 YSGGGGGGG 125

[Close]

BLAST of PI0006797 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 9   RCFVGGLAWATDSNALEKAFSPCGDIVEAKIVCDRETGRSRGFGFVTFSEEDAMRTAIES 68
           + F+GG+A++ D ++L +AF+  G++V+ +++ DRETGRSRGFGFVTF+  +A  +AI++
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGHILDGRNITVNEAQQR---GGGGGGGYNRGGGGGGGYGGRRDGGGGGGFNRGGGGYG 128
           ++G  L GR + VN A  R   GG GGGGY   GGGGGGYGG    GGG G   G GGYG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGY---GGGGGGYGGSGGYGGGAGGYGGSGGYG 160

Query: 129 GGGGGYGG--GGGYGGGRDRGYGG---GGDGGSRYSRGGGGG--GSEGGW 169
           GG GGYGG  GGGYGG    GYGG   GG GG     GG GG  GS GG+
Sbjct: 161 GGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of PI0006797 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10979	2.6e-33	64.00	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
Q03878	4.8e-32	68.48	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q03250	6.3e-32	65.19	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q43472	3.1e-31	65.66	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P49311	1.6e-30	66.10	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of PI0006797 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CE16	3.3e-60	91.81	glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 ...	[more]
A0A6J1FRL7	5.9e-57	87.93	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1L652	2.5e-55	86.78	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	2.0e-52	86.13	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JGK0	7.4e-52	85.63	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]

BLAST of PI0006797 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460935.1	6.9e-60	91.81	PREDICTED: glycine-rich RNA-binding protein 1-like [Cucumis melo]	[more]
XP_022943401.1	1.2e-56	87.93	glycine-rich RNA-binding protein-like [Cucurbita moschata]	[more]
KAG6571119.1	1.8e-55	88.44	hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006868.1	5.1e-55	86.78	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023512522.1	2.5e-54	87.13	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0006797 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.1	4.5e-33	65.19	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	1.4e-31	67.25	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	6.7e-29	64.12	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	1.5e-28	66.67	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	1.2e-17	52.94	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 6.1E-28 score: 108.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 5.3E-22 score: 77.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 18.495615
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..125 e-value: 3.2E-32 score: 113.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..170
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..170
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..170
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006797.1	PI0006797.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding