PI0006789 (gene) Melon (PI 482460) v1

Overview
NamePI0006789
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPathogen-induced protein CuPi1
Locationchr01: 3751150 .. 3752005 (+)
RNA-Seq ExpressionPI0006789
SyntenyPI0006789
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGGTGAGTTTCTTCAAAAATCTCGCCCTTATTTACAAAAAAAAATTGTTATTATGAAACAAATATTGATAAAATTGAACATTGAAGGACTAAATTCAAAATTGTTTAAAAACAAACTATTTGTTGATTTATTTTAAATGCTTTAATTTCCAAACGCAGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA

mRNA sequence

GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA

Coding sequence (CDS)

ATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAG

Protein sequence

MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPICVRNGRYSNCLTPRPPRERCSIYIRNCPP
Homology
[Close]
BLAST of PI0006789 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0 

Query: 1  MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
          MSSGK  GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T    P T  R+KPI
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60

Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
          C  +G YS C+   +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84

[Close]
BLAST of PI0006789 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0 

Query: 1  MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
          MSSGK  GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T    P T  R+KPI
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60

Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
          C  +G YS C+   +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84

[Close]
BLAST of PI0006789 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 1  MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSI-SYHTPLIGPGTGDRDKPIC 60
          MS GKG  LLAF  FF LF SSE+ AARKL V  NN   +    T  + P T   D+P C
Sbjct: 1  MSGGKGSVLLAFLLFFFLF-SSELAAARKLMVAGNNAAVMHEGRTTFVTPRTQYSDRPPC 60

Query: 61 VRNGRYSNCLTPRPPRERCSIYIRNCPP 88
           R   Y +C + +PP   C  Y +NCPP
Sbjct: 61 YRTSPYEDCPSFQPP--VCDPYTQNCPP 85

The following BLAST results are available for this feature:
BLAST of PI0006789 vs.
Match NameE-valueIdentityDescription
BLAST of PI0006789 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
O245123.6e-1861.36Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... [more]
BLAST of PI0006789 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144528.17.4e-1861.36uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu... [more]
KAG6589129.11.2e-0746.59hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of PI0006789 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006789.1PI0006789.1mRNA