PI0006655 (gene) Melon (PI 482460) v1

Overview


Name	PI0006655
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 21599215 .. 21599379 (+)
RNA-Seq Expression	PI0006655
Synteny	PI0006655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGACGTACTAGATGACATTGATGAGGGTGATTCTACATACACCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGATGAGCTTGCCAGAAAAATGTTTAGTAATTGGGAGTTGTGTAATCAGTAA

mRNA sequence

ATGACGAACAATGACGTACTAGATGACATTGATGAGGGTGATTCTACATACACCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGATGAGCTTGCCAGAAAAATGTTTAGTAATTGGGAGTTGTGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGACGTACTAGATGACATTGATGAGGGTGATTCTACATACACCACCACTGGCGGTGAAGATATTCATTACATAGAGACCTCGAGTGCATGGAGTCAATGGAGGGATGAGCTTGCCAGAAAAATGTTTAGTAATTGGGAGTTGTGTAATCAGTAA

Protein sequence

MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ

Homology

[Close]

BLAST of PI0006655 vs. ExPASy TrEMBL
Match: A0A5A7V6M3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00030 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 35/54 (64.81%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN++++DD+DE DSTY TTGG++I+YIE S+ WS+WRD+LA  MFS+WELC+Q
Sbjct: 193 MTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELCDQ 246

[Close]

BLAST of PI0006655 vs. ExPASy TrEMBL
Match: A0A5A7TC28 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00860 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ D+IDE DST+ TT  +DIHYIETS+ WSQWRD+LA +MF++WELCNQ
Sbjct: 148 MTNFDIKDNIDEVDSTHVTTTADDIHYIETSNEWSQWRDDLAEEMFTDWELCNQ 201

[Close]

BLAST of PI0006655 vs. ExPASy TrEMBL
Match: A0A5D3BPW4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00460 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ DDIDE  ST+TTT  +DIHYIETS+ WSQWRD+L  +MFSNWEL NQ
Sbjct: 207 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 260

[Close]

BLAST of PI0006655 vs. ExPASy TrEMBL
Match: A0A5A7UCP5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00640 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ DDIDE  ST+TTT  +DIHYIETS+ WSQWRD+L  +MFSNWEL NQ
Sbjct: 204 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 257

[Close]

BLAST of PI0006655 vs. ExPASy TrEMBL
Match: A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCN 54
           MTN D+LDDIDE DST+ TT G+DIHYIET + W+QWRDELA +MFS+WEL N
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

[Close]

BLAST of PI0006655 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 35/54 (64.81%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN++++DD+DE DSTY TTGG++I+YIE S+ WS+WRD+LA  MFS+WELC+Q
Sbjct: 193 MTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFSDWELCDQ 246

[Close]

BLAST of PI0006655 vs. NCBI nr
Match: KAA0041022.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK20381.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-13
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ D+IDE DST+ TT  +DIHYIETS+ WSQWRD+LA +MF++WELCNQ
Sbjct: 148 MTNFDIKDNIDEVDSTHVTTTADDIHYIETSNEWSQWRDDLAEEMFTDWELCNQ 201

[Close]

BLAST of PI0006655 vs. NCBI nr
Match: KAA0052247.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ DDIDE  ST+TTT  +DIHYIETS+ WSQWRD+L  +MFSNWEL NQ
Sbjct: 204 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 257

[Close]

BLAST of PI0006655 vs. NCBI nr
Match: TYK01811.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCNQ 55
           MTN D+ DDIDE  ST+TTT  +DIHYIETS+ WSQWRD+L  +MFSNWEL NQ
Sbjct: 207 MTNYDIADDIDEVSSTHTTTADDDIHYIETSNEWSQWRDKLVEEMFSNWELHNQ 260

[Close]

BLAST of PI0006655 vs. NCBI nr
Match: KAA0033880.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 9.9e-13
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MTNNDVLDDIDEGDSTYTTTGGEDIHYIETSSAWSQWRDELARKMFSNWELCN 54
           MTN D+LDDIDE DST+ TT G+DIHYIET + W+QWRDELA +MFS+WEL N
Sbjct: 168 MTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFSDWELRN 220

The following BLAST results are available for this feature:

BLAST of PI0006655 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M3	4.4e-14	64.81	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TC28	2.2e-13	68.52	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BPW4	3.7e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UCP5	3.7e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BQ11	4.8e-13	71.70	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0006655 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063753.1	9.0e-14	64.81	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas...	[more]
KAA0041022.1	4.5e-13	68.52	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK20381.1 putative nucleas...	[more]
KAA0052247.1	7.6e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK01811.1	7.6e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0033880.1	9.9e-13	71.70	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01264.1 putative nucleas...	[more]

BLAST of PI0006655 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006655.1	PI0006655.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding