PI0006625 (gene) Melon (PI 482460) v1

Overview


Name	PI0006625
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr06: 19843941 .. 19844165 (+)
RNA-Seq Expression	PI0006625
Synteny	PI0006625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTATTTAAGGAAGAAAAGGTTCTTAGCTAGAACCTACAAAAAACTAAAAGACAGCCAAATTGGTCCTTGTAAAATCCTAGCTAAATACGAGCCAAATGCCTACAAGCTTGAGCTACCAGAAGGAATCAACATCAATCTTATTTTCAACATCGCAAACCTGAAGAAGTACCATGCTCCTGATGGATTCCAACTTACTAACCCAACTCGAGGGAAATTTTAA

mRNA sequence

ATGACCTATTTAAGGAAGAAAAGGTTCTTAGCTAGAACCTACAAAAAACTAAAAGACAGCCAAATTGGTCCTTGTAAAATCCTAGCTAAATACGAGCCAAATGCCTACAAGCTTGAGCTACCAGAAGGAATCAACATCAATCTTATTTTCAACATCGCAAACCTGAAGAAGTACCATGCTCCTGATGGATTCCAACTTACTAACCCAACTCGAGGGAAATTTTAA

Coding sequence (CDS)

ATGACCTATTTAAGGAAGAAAAGGTTCTTAGCTAGAACCTACAAAAAACTAAAAGACAGCCAAATTGGTCCTTGTAAAATCCTAGCTAAATACGAGCCAAATGCCTACAAGCTTGAGCTACCAGAAGGAATCAACATCAATCTTATTTTCAACATCGCAAACCTGAAGAAGTACCATGCTCCTGATGGATTCCAACTTACTAACCCAACTCGAGGGAAATTTTAA

Protein sequence

MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHAPDGFQLTNPTRGKF

Homology

[Close]

BLAST of PI0006625 vs. ExPASy TrEMBL
Match: A0A5D3BGV8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00120 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +LR+ RF A+ Y+KLKD QIGPCK+LAKY+PNAYK+ELPE +NINL+FN+A+LKKYHA
Sbjct: 322 MAHLRENRFPAKIYEKLKDKQIGPCKVLAKYDPNAYKIELPEELNINLVFNVADLKKYHA 381

Query: 61  PDGFQLTNPTRGK 74
           PD FQL +P RG+
Sbjct: 382 PDEFQLADPARGR 394

[Close]

BLAST of PI0006625 vs. ExPASy TrEMBL
Match: A0A5D3DLG1 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.0e-22
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M  LRK RF A TY KLKD QIGPCK+L KY+PNAYK++LPE +NIN +FN+ +LKKYHA
Sbjct: 295 MAPLRKNRFPAGTYGKLKDKQIGPCKVLTKYDPNAYKVKLPEELNINPVFNVVDLKKYHA 354

Query: 61  PDGFQLTNPTRGK 74
           PDGFQL +P RG+
Sbjct: 355 PDGFQLADPARGR 367

[Close]

BLAST of PI0006625 vs. ExPASy TrEMBL
Match: A0A5D3E6W7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007040 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
          M +L+KKRFLA TY KLKD QI PC+I+AKYEPNAYKL LPEGINI+ +FNIA+LKKY+ 
Sbjct: 1  MAHLKKKRFLAGTYGKLKDRQIDPCRIIAKYEPNAYKLALPEGINISPVFNIADLKKYNV 60

Query: 61 PDGFQLT 68
          PDGFQLT
Sbjct: 61 PDGFQLT 67

[Close]

BLAST of PI0006625 vs. ExPASy TrEMBL
Match: A0A5D3CDD0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001560 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +L+K RFL  TY KLKD QIGPC+ILAKYEPNA K++LPEG NI+ IFN+ +L+ Y+A
Sbjct: 91  MAHLKKNRFLIGTYGKLKDKQIGPCRILAKYEPNADKIKLPEGFNISPIFNVTDLRSYNA 150

Query: 61  PDGFQLT 68
            DGFQL+
Sbjct: 151 SDGFQLS 157

[Close]

BLAST of PI0006625 vs. ExPASy TrEMBL
Match: A0A1S4DU23 (uncharacterized protein LOC107990547 OS=Cucumis melo OX=3656 GN=LOC107990547 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +L+K RFL  TY KLKD QIGPC+ILAKYEPNA K++LPEG NI+ IFN+ +L+ Y+A
Sbjct: 91  MAHLKKNRFLIGTYGKLKDKQIGPCRILAKYEPNADKIKLPEGFNISPIFNVTDLRSYNA 150

Query: 61  PDGFQLT 68
            DGFQL+
Sbjct: 151 SDGFQLS 157

[Close]

BLAST of PI0006625 vs. NCBI nr
Match: KAA0054527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ98269.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-23
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +LR+ RF A+ Y+KLKD QIGPCK+LAKY+PNAYK+ELPE +NINL+FN+A+LKKYHA
Sbjct: 322 MAHLRENRFPAKIYEKLKDKQIGPCKVLAKYDPNAYKIELPEELNINLVFNVADLKKYHA 381

Query: 61  PDGFQLTNPTRGK 74
           PD FQL +P RG+
Sbjct: 382 PDEFQLADPARGR 394

[Close]

BLAST of PI0006625 vs. NCBI nr
Match: KAA0040020.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK24481.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M  LRK RF A TY KLKD QIGPCK+L KY+PNAYK++LPE +NIN +FN+ +LKKYHA
Sbjct: 295 MAPLRKNRFPAGTYGKLKDKQIGPCKVLTKYDPNAYKVKLPEELNINPVFNVVDLKKYHA 354

Query: 61  PDGFQLTNPTRGK 74
           PDGFQL +P RG+
Sbjct: 355 PDGFQLADPARGR 367

[Close]

BLAST of PI0006625 vs. NCBI nr
Match: TYK31396.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
          M +L+KKRFLA TY KLKD QI PC+I+AKYEPNAYKL LPEGINI+ +FNIA+LKKY+ 
Sbjct: 1  MAHLKKKRFLAGTYGKLKDRQIDPCRIIAKYEPNAYKLALPEGINISPVFNIADLKKYNV 60

Query: 61 PDGFQLT 68
          PDGFQLT
Sbjct: 61 PDGFQLT 67

[Close]

BLAST of PI0006625 vs. NCBI nr
Match: XP_016899489.1 (PREDICTED: uncharacterized protein LOC107990547 [Cucumis melo] >KAA0047695.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK08349.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.0e-17
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +L+K RFL  TY KLKD QIGPC+ILAKYEPNA K++LPEG NI+ IFN+ +L+ Y+A
Sbjct: 91  MAHLKKNRFLIGTYGKLKDKQIGPCRILAKYEPNADKIKLPEGFNISPIFNVTDLRSYNA 150

Query: 61  PDGFQLT 68
            DGFQL+
Sbjct: 151 SDGFQLS 157

[Close]

BLAST of PI0006625 vs. NCBI nr
Match: KAA0059835.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   MTYLRKKRFLARTYKKLKDSQIGPCKILAKYEPNAYKLELPEGININLIFNIANLKKYHA 60
           M +LRK RF ARTY KLKD Q GP ++L K+  NAYK+ELP  ++I+ +FN+A+LK Y+A
Sbjct: 83  MIHLRKNRFPARTYSKLKDRQFGPFRVLKKFGDNAYKIELPADLHIHPVFNVADLKHYYA 142

Query: 61  PDGFQLTN 69
           PD F+L +
Sbjct: 143 PDDFKLAS 150

The following BLAST results are available for this feature:

BLAST of PI0006625 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGV8	1.4e-23	69.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DLG1	6.0e-22	68.49	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3E6W7	3.9e-21	76.12	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CDD0	3.4e-17	65.67	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S4DU23	3.4e-17	65.67	uncharacterized protein LOC107990547 OS=Cucumis melo OX=3656 GN=LOC107990547 PE=...	[more]

BLAST of PI0006625 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054527.1	2.9e-23	69.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ98269.1 D...	[more]
KAA0040020.1	1.2e-21	68.49	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
TYK31396.1	8.0e-21	76.12	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
XP_016899489.1	7.0e-17	65.67	PREDICTED: uncharacterized protein LOC107990547 [Cucumis melo] >KAA0047695.1 DNA...	[more]
KAA0059835.1	2.7e-13	55.88	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0006625 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006625.1	PI0006625.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0003676	nucleic acid binding