PI0006586 (gene) Melon (PI 482460) v1

Overview


Name	PI0006586
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA-dependent RNA polymerase
Location	chr09: 5380286 .. 5384345 (+)
RNA-Seq Expression	PI0006586
Synteny	PI0006586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAATGGAAGACTTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGACAAAATGAGGGTAATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGAATTCGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTTGTTGTCCTCTCAATCAACCTTCCAAGTTTCTCCTCATTCAGGTTTCTTTTCTCTTTCTTCTCTTTTTTCATTACTTAAATTACAACAAAGAATGTCTTTTTGAAACAAAATTTAACGGTTTCCATCCAAATCAGAGATATTTTTTTAACATAACTTTAAGGATTTTCATCCATAACTAGTAAGGGTATTTTTTAACATTTTTTAAAGTTTAAGGGCATTTTTTTAAAACTTTTGAAAGTTTAGAAGTATTTTTTATTACAAATTACAAAGCTTAGTGGCTTTTTTTTTTGTAATTTAATATTTTCTTTATTTTGTTTTTTATTTTGTTTGTGTAGTAAAGTTAAAATATCAATATTTAGTTTGAATATATAATTGTAATCAACTAATGAAAAAAAATAATTGTAATGTCCAATTTAATGTGAGTGTTATTAGGTTTGTTATATGATATTGAATTGTGTTTGAATTGTGCAGTTGCAGGGAGCTCCAAGAATTTTCAGGAAACTTCATCATCTCAATTACATTCCAACGAATCCATTAGTTTTGGTTGGATTAGGGATGTGGATTTCACCCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGCTTACAACTTTCTCCTCCACATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTTCAAACTAACCTATGCTCCATTCATTCTCCATAAACCTTCTTCTTCTTTCTTCTCTAATTCAAATTTAGTTCCTATCATCACTCCACCCCAACCCTTTCATATCTCTTTTAAAATTTTGTTCAAAATCAATGTCCTACTTCAACATGGTTATCTTTTTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTATATTTCATCCTGATTATATAGAGCATGCCTTAGAAAAACTATTTCATTTAAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCCTACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTATTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCATTTTATTGATGATATAGATAATTTTCTTCGTGTGTCTTTTGTTGATGAAGAATTGGATAAACTTCACTCCATTGATCTAGCTCCACGTTCATCATCTCCTGAAAATAGTAAAAGAACTAGAGTATATGATAGAGTACTATCTGTGTTAAAAAATGGTATAGTCATTGGTGATAAAAAGTTTGAGTTTCTGGCTTTCTCGGCTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGGGGCTAAGTGCAACAGATATTAGAGAGTGGATGGGTGACTTTCGTCAGATAAGGAATGTGGCAAAATATGCTGCTCGACTTGGCCAATCTTTTGGCTCATCTAGAAAAACTTTGTGCGTTGAAAAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGCATTGTTTCTCCGATGGAATCGGAAAATTATTTGAAACATTAGCTAAGAAAGTAGCTGAAAAATGTGGTTTGTTCAGTCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTATGTCGGAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCGCTCAATACACAACTTGATGTTTTGTCGTGGAGCAAGTATCAACCATGTTTTCTTAACCGTCAAGTGATAAACCTTCTATCAACTTTTGGAATTGGGGACGATGTTTTTGTGAAAAAATAAAAGAAGGCTATAGATCAACTAGATTCTATTTTAGAAGATCCATCAAGGGCATTAGAAGTGTTGGAGTTTGATGTCCCCAGGAGAAATGACTAGTATTTTGAAGGACTTGCTTTCGTTTTACATGTCAAATGAAGAACCTTTTCTAAATATGATGCTACAGACATTTCGAGCAAATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCAAAGGGAAGGACAATGTTGGGTTGCCTGGATGAAACTCGATCGCTAGAATATGGACAGGTGTTTATTCATTGTTTTGTCCCTAGAAGATCAAGCGAGGATAATTTTGTAGCTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCTGGGGGACGTGCGTGTGCTCGATGCTGTTAATGTGAAAGCTCTACATCACATGGCGGATTGTGTTGTTTTTCCACAGAAAGGAAAAAGGTAGGCAAGCTTATTGTGTATGAATTACTTATCTATTGAGTGCGTATCACATATCTATATTTGTTACAAATTCATGCACTTTCCTGAAGATTTGTATTAATAGTTTTTATAGTTGCCCTTGACTAATATTTCAATATGTTATATTAGGCCTCACCCAAACGAGTGTTCTGGGAGTAATTTGGATGGTGACATGTACTTTGTTTGTTGGGATTCAGAGTTAACTTGTATTAAACAAGTTAAACCTATGAGCTATGAGCCTGCACCAACTATGCAATTGGATCATGATGTCACAATTGAGGTGTGGTTTTAGGACGAATTTATTACTATTTCAAATATATGTGTGCATCTTTTTTGTTCTTTTTATATAAATAATAATATGCATTTGTATCATATTTAAAAGTTCACAAGAATTTTTTTTATTCTACGATAAGTTTGAATTAAATATGATTATTTTGATACAGGAAGTTCAAAAATATTTTGCCAATTACATGGTGAATGATCGTCTTGGGACCATTGCGAATGCTCACACTGTTTTTGCAGATAAGAATCCTAAGAAGGCAATGAGTGCTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCATGCAATCTTCGTGTCCATGAGTATCCCGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTCGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCTTCTGATGTCAACGCCCTTGAAATTTTCTCTAGGGAAGTTGCTACAAAGTGCTATGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATTTGAGAGAAGCTTTTGATTACAAAACTAGGTACGACTTCAAATTAAGGAACCTTATGGATTATTATGATAAACCTGAATTAGTTAGTGGAAACATCTTGAGAATGGCAAAGTCTTTCGATAAAAGGAATGACTTGGAACAAATTACCTTTGCCATAAAGTCACTAAGAAAGGAGGTTAGGTCTTGGTTCAATGAGAATGAAAGTAAGTCTACATACGACGACATCAAAGATGAATATGCACGAGCATCTGCATGGTACTGTGTCACTTATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGAGAAGATGTCATTAAGGAATTCTTTCCCAATGTCATCACTATTACACAATTTTGATGGGGTGAGTTTGTACTAACTTTTGGAGGCCAAGTTATGTTTTGCATTGTGATCATCTCTATAGTTTTAGCTTGTGAGATATAATATGTTGATATTGTAATTTTATGAAGCTTTTTTAATAGGTTCTATATGCTTAAAGAGATTGGGATGAGAGGATCAAAAGGTTTGATGTGTCTGAATCCTTGAGTTCTAAGATGTTGGTAAGGAGGTTGTAATTTAATTTACATGTTCCTACTTAATGAAGTGAATTTCAGAGTTTTATGTTTGAAATTGTATGCTTCATATAATAGATGA

mRNA sequence

ATGGAGAGAATGGAAGACTTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGACAAAATGAGGGTAATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGAATTCGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTTGTTGTCCTCTCAATCAACCTTCCAAGTTTCTCCTCATTCAGAATTTTCAGGAAACTTCATCATCTCAATTACATTCCAACGAATCCATTAGTTTTGGTTGGATTAGGGATGTGGATTTCACCCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGCTTACAACTTTCTCCTCCACATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTTCAAACTAACCTATGCTCCATTCATTCTCCATAAACCTTCTTCTTCTTTCTTCTCTAATTCAAATTTAGTTCCTATCATCACTCCACCCCAACCCTTTCATATCTCTTTTAAAATTTTGTTCAAAATCAATGTCCTACTTCAACATGGTTATCTTTTTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTATATTTCATCCTGATTATATAGAGCATGCCTTAGAAAAACTATTTCATTTAAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCCTACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTATTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCATTTTATTGATGATATAGATAATTTTCTTCGTGTGTCTTTTGTTGATGAAGAATTGGATAAACTTCACTCCATTGATCTAGCTCCACGTTCATCATCTCCTGAAAATAGTAAAAGAACTAGAGTATATGATAGAGTACTATCTGTGTTAAAAAATGGTATAGTCATTGGTGATAAAAAGTTTGAGTTTCTGGCTTTCTCGGCTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGGGGCTAAGTGCAACAGATATTAGAGAGTGGATGGGTGACTTTCGTCAGATAAGGAATGTGGCAAAATATGCTGCTCGACTTGGCCAATCTTTTGGCTCATCTAGAAAAACTTTGTGCGTTGAAAAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGCATTGTTTCTCCGATGGAATCGGAAAATTATTTGAAACATTAGCTAAGAAAGTAGCTGAAAAATGTGGTTTGTTCAGTCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTATGTCGGAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCGCTCAATACACAACTTGATGTTTTGTCGTGGAGCAAGTATCAACCATGTTTTCTTAACCGTCAAGTGATAAACCTTCTATCAACTTTTGGAATTGGGGACGATGTTTTTAAGTGTTGGAGTTTGATGTCCCCAGGAGAAATGACTAGTATTTTGAAGGACTTGCTTTCGTTTTACATGTCAAATGAAGAACCTTTTCTAAATATGATGCTACAGACATTTCGAGCAAATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCAAAGGGAAGGACAATGTTGGGTTGCCTGGATGAAACTCGATCGCTAGAATATGGACAGGTGTTTATTCATTGTTTTGTCCCTAGAAGATCAAGCGAGGATAATTTTGTAGCTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCTGGGGGACGTGCGTGTGCTCGATGCTGTTAATGTGAAAGCTCTACATCACATGGCGGATTGTGTTGTTTTTCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTAATTTGGATGGTGACATGTACTTTGTTTGTTGGGATTCAGAGTTAACTTGTATTAAACAAGTTAAACCTATGAGCTATGAGCCTGCACCAACTATGCAATTGGATCATGATGTCACAATTGAGGAAGTTCAAAAATATTTTGCCAATTACATGGTGAATGATCGTCTTGGGACCATTGCGAATGCTCACACTGTTTTTGCAGATAAGAATCCTAAGAAGGCAATGAGTGCTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCATGCAATCTTCGTGTCCATGAGTATCCCGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTCGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCTTCTGATGTCAACGCCCTTGAAATTTTCTCTAGGGAAGTTGCTACAAAGTGCTATGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATTTGAGAGAAGCTTTTGATTACAAAACTAGGTACGACTTCAAATTAAGGAACCTTATGGATTATTATGATAAACCTGAATTAGTTAGTGGAAACATCTTGAGAATGGCAAAGTCTTTCGATAAAAGGAATGACTTGGAACAAATTACCTTTGCCATAAAGTCACTAAGAAAGGAGGTTAGGTCTTGGTTCAATGAGAATGAAAGTAAGTCTACATACGACGACATCAAAGATGAATATGCACGAGCATCTGCATGGTACTGTGTCACTTATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGAGAAGATGTCATTAAGGAATTCTTTCCCAATGTCATCACTATTACACAATTTTGATGGGGTGAGTTGTAATTTAATTTACATGTTCCTACTTAATGAAGTGAATTTCAGAGTTTTATGTTTGAAATTGTATGCTTCATATAATAGATGA

Coding sequence (CDS)

ATGGAGAGAATGGAAGACTTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGACAAAATGAGGGTAATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGAATTCGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTTGTTGTCCTCTCAATCAACCTTCCAAGTTTCTCCTCATTCAGAATTTTCAGGAAACTTCATCATCTCAATTACATTCCAACGAATCCATTAGTTTTGGTTGGATTAGGGATGTGGATTTCACCCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGCTTACAACTTTCTCCTCCACATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTTCAAACTAACCTATGCTCCATTCATTCTCCATAAACCTTCTTCTTCTTTCTTCTCTAATTCAAATTTAGTTCCTATCATCACTCCACCCCAACCCTTTCATATCTCTTTTAAAATTTTGTTCAAAATCAATGTCCTACTTCAACATGGTTATCTTTTTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTATATTTCATCCTGATTATATAGAGCATGCCTTAGAAAAACTATTTCATTTAAAGGAATGTTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCCTACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGATGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTATTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTCATTTTATTGATGATATAGATAATTTTCTTCGTGTGTCTTTTGTTGATGAAGAATTGGATAAACTTCACTCCATTGATCTAGCTCCACGTTCATCATCTCCTGAAAATAGTAAAAGAACTAGAGTATATGATAGAGTACTATCTGTGTTAAAAAATGGTATAGTCATTGGTGATAAAAAGTTTGAGTTTCTGGCTTTCTCGGCTAGTCAACTAAGGGAAAATTCTTTTTGGATGTTTGCTTCAAGGGAGGGGCTAAGTGCAACAGATATTAGAGAGTGGATGGGTGACTTTCGTCAGATAAGGAATGTGGCAAAATATGCTGCTCGACTTGGCCAATCTTTTGGCTCATCTAGAAAAACTTTGTGCGTTGAAAAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAACATTATGCATTGTTTCTCCGATGGAATCGGAAAATTATTTGAAACATTAGCTAAGAAAGTAGCTGAAAAATGTGGTTTGTTCAGTCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGTGTTGTAGCTATTGACCCTATGTCGGAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCGCTCAATACACAACTTGATGTTTTGTCGTGGAGCAAGTATCAACCATGTTTTCTTAACCGTCAAGTGATAAACCTTCTATCAACTTTTGGAATTGGGGACGATGTTTTTAAGTGTTGGAGTTTGATGTCCCCAGGAGAAATGACTAGTATTTTGAAGGACTTGCTTTCGTTTTACATGTCAAATGAAGAACCTTTTCTAAATATGATGCTACAGACATTTCGAGCAAATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCAAAGGGAAGGACAATGTTGGGTTGCCTGGATGAAACTCGATCGCTAGAATATGGACAGGTGTTTATTCATTGTTTTGTCCCTAGAAGATCAAGCGAGGATAATTTTGTAGCTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCTGGGGGACGTGCGTGTGCTCGATGCTGTTAATGTGAAAGCTCTACATCACATGGCGGATTGTGTTGTTTTTCCACAGAAAGGAAAAAGGCCTCACCCAAACGAGTGTTCTGGGAGTAATTTGGATGGTGACATGTACTTTGTTTGTTGGGATTCAGAGTTAACTTGTATTAAACAAGTTAAACCTATGAGCTATGAGCCTGCACCAACTATGCAATTGGATCATGATGTCACAATTGAGGAAGTTCAAAAATATTTTGCCAATTACATGGTGAATGATCGTCTTGGGACCATTGCGAATGCTCACACTGTTTTTGCAGATAAGAATCCTAAGAAGGCAATGAGTGCTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCAAAAACTGGTGTGCCAGCAAACTTGCCATGCAATCTTCGTGTCCATGAGTATCCCGATTTCATGGACAAGCCCAATAAACCAACTTATGTATCAAATGGTGTTCTCGGGAAGCTTTTTAGAGGAGTGAAAGATGTTTCTTCTGATGTCAACGCCCTTGAAATTTTCTCTAGGGAAGTTGCTACAAAGTGCTATGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATTTGAGAGAAGCTTTTGATTACAAAACTAGGTACGACTTCAAATTAAGGAACCTTATGGATTATTATGATAAACCTGAATTAGTTAGTGGAAACATCTTGAGAATGGCAAAGTCTTTCGATAAAAGGAATGACTTGGAACAAATTACCTTTGCCATAAAGTCACTAAGAAAGGAGGTTAGGTCTTGGTTCAATGAGAATGAAAGTAAGTCTACATACGACGACATCAAAGATGAATATGCACGAGCATCTGCATGGTACTGTGTCACTTATCACCCAGATTATTGGGGTTGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAACTTATTCAAATCAAAAGAGAGAAGATGTCATTAAGGAATTCTTTCCCAATGTCATCACTATTACACAATTTTGATGGGGTGAGTTGTAATTTAATTTACATGTTCCTACTTAATGAAGTGAATTTCAGAGTTTTATGTTTGAAATTGTATGCTTCATATAATAGATGA

Protein sequence

MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENILSVEFCCPLNQPSKFLLIQNFQETSSSQLHSNESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVFKCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYYDKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDGVSCNLIYMFLLNEVNFRVLCLKLYASYNR

Homology

[Close]

BLAST of PI0006586 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1092.0 bits (2823), Expect = 0.0e+00
Identity = 563/1008 (55.85%), Postives = 702/1008 (69.64%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            +  +  LK   G  +S  K   +W  +   V FG G+RKL F  S+   +Y++EL +ENI
Sbjct: 94   LHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENI 153

Query: 61   LSVEFCCPLNQPSKFLLIQNFQETSSSQLHSNE-SISFG------------WIRDVDFTP 120
              ++   P  + SKFL+IQ        +      ++ FG            WIR  DFT 
Sbjct: 154  WQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTS 213

Query: 121  SSCIGQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSN-LVPIITPP 180
            SSCIGQS A CL+L    ++P F +    +    A   L +  SS+ SN+N LVP++ PP
Sbjct: 214  SSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPP 273

Query: 181  QPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCY 240
              F + F+ILFK+N L+Q+  L GP LD +F+RL++   +    I+H LEKLFHL ECCY
Sbjct: 274  PGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCY 333

Query: 241  KPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRH 300
            +P  WL+D+Y  +    +LP  P ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH
Sbjct: 334  EPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRH 393

Query: 301  FIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKF 360
            +   I+NFLRVSFVDE+L+K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIGDKKF
Sbjct: 394  YSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKF 453

Query: 361  EFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTL 420
            EFLAFS+SQLRENS WMFA  + ++A  IR WMGDF  IRNVAKYAARLGQSF SSR+TL
Sbjct: 454  EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 513

Query: 421  CVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGY 480
             V   EIEVIPDVE+      + FSDGIGK+    A+KVA KCGL   +PSAFQIRY GY
Sbjct: 514  NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGY 573

Query: 481  KGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDV 540
            KGVVA+DP S KKLSLRKSM K+ S NT+LDVL+WSKYQPC++NRQ+I LLST G+ D V
Sbjct: 574  KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSV 633

Query: 541  F----------------------KCWSLMSPGEMTSILKDL-LSFYMSNEEPFLNMMLQT 600
            F                      +   LM+PGE T+ILK L L  Y  + EPFL+MMLQ 
Sbjct: 634  FEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 693

Query: 601  FRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVV 660
            FRA+KLL+LRTK+RIF+  GR+M+GCLDETR+LEYGQV +    P R     F+  G VV
Sbjct: 694  FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVV 753

Query: 661  VAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDS 720
            VAKNPCLH GDVRVL AVNV AL+HM DCVVFPQKG RPHPNECSGS+LDGD+YFVCWD 
Sbjct: 754  VAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQ 813

Query: 721  ELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKK 780
            EL   +  +PM Y P PT  LDHDVTIEEV++YFANY+VND LG IANAHT FADK P K
Sbjct: 814  ELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLK 873

Query: 781  AMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFR 840
            A S  CI+LAK FS AVDFPKTGV A +P +L V EYPDFM+KP+KPTY S  V+GKLFR
Sbjct: 874  AFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFR 933

Query: 841  GVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY-- 900
             VK+ +  + +++ F+ +VA+K YD DMEVDGFE+Y+ EAF  K  YDFKL NLMDYY  
Sbjct: 934  EVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGI 993

Query: 901  -DKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYAR 960
              + E++SG I+RM+KSF KR D E I  A+++LRKE  S FN +E +      ++E A+
Sbjct: 994  KTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEE------ENESAK 1053

Query: 961  ASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLR 969
            ASAWY VTYH  YWG YNEG+ RDHFLSF WCV DKL++IK+  +  R
Sbjct: 1054 ASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091

[Close]

BLAST of PI0006586 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 851.7 bits (2199), Expect = 8.7e-246
Identity = 431/736 (58.56%), Postives = 534/736 (72.55%), Query Frame = 0


Query: 270 VYFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYD 329
           VYF GPE N+SNRVVR+F  DI+NFLR+SFVDE+ +KL + DL+PRS+S  ++ RT +Y 
Sbjct: 9   VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 330 RVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVA 389
           RVLSVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDFR IRNVA
Sbjct: 69  RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 390 KYAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKC 449
           KYAARLGQSF SS +TL V+K+E+E I D+   +    H FSDGIGK+    A +VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 450 GLFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFL 509
            L    PSAFQIRY GYKGVVA+DP S  KLSLRKSMLK+ S N  +DVL++SKYQP FL
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 510 NRQVINLLSTFGIGDDVF----------------------KCWSLMSPGEMTSILKD-LL 569
           NRQ+I LLST G+ D VF                      +   LM  GE+T+ +K+ LL
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 570 SFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCF 629
             Y  ++EP+L+M+LQTFRA+KLL+L+TKSRI +PKGR M+GCLDETR+L+YGQVFI   
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA- 368

Query: 630 VPRRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNE 689
               +  D F   GKVV+AKNPCLH GD+R+L AV+V  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369 TSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 690 CSGSNLDGDMYFVCWDSELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRL 749
           CSGS+LDGD+YFV WD  L   + V PM Y PAPT  LDHDVTIEEV++YF NY+VN+ L
Sbjct: 429 CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 750 GTIANAHTVFADKNPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDK 809
           G IANAH VFADK   KA S+ CI+LAKLFSIAVDFPKTGVPA +P  L V EYPDFM+K
Sbjct: 489 GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 810 PNKPTYVSNGVLGKLFRGVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDY 869
            +K TY S GV+GKL+R +K  +  +   + F+REVA + YD DM VDG+E Y+ EA   
Sbjct: 549 LDKVTYESKGVIGKLYREIKKHTPHI---KHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 870 KTRYDFKLRNLMDYY---DKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFN 929
           K  YDFKL NLMD+Y    + E++SG IL+MAK+F K++D + I  A++SLRKE RS F+
Sbjct: 609 KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 930 ENESKSTYDDIKDEYARASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRE 980
           E              A+ASAWY VTYHP++WGCYNEG +R HF+SFPWC+ +KL++IK+ 
Sbjct: 669 EMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRIKQR 728

[Close]

BLAST of PI0006586 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 3.5e-194
Identity = 400/1011 (39.56%), Postives = 570/1011 (56.38%), Query Frame = 0


Query: 24   WEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENILSVEFCCPLNQPSKFLLIQNF-- 83
            W+G +   E   G R++  YL ++   YK+E+ FE++      C L+     LL  N+  
Sbjct: 130  WDGVR--AEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGAILLQLNYAP 189

Query: 84   ------------QETSSSQLHS-NESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLP 143
                              + H+  E   F W+R +DFTP+   G+   L L+L       
Sbjct: 190  RIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGK----- 249

Query: 144  PFFQTLVGFKLTYAPF------ILHKPSSSFFSNSNLVPIITPPQPFHISFKILFKINVL 203
                 LV   L   PF      +         ++SN+VP++  P+ + + +++LF++N L
Sbjct: 250  ---SALVSDILKSLPFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSL 309

Query: 204  LQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKWLKDQYLSYYIS 263
            +  G +    ++ + F+ +       D      EK+  L+  CY P ++++ +  S   S
Sbjct: 310  MHMGKIVAKHVNADLFKALQE--LPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRS 369

Query: 264  NQLPWKPNISLDDG---LVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDIDNFLRVSF 323
            + +    N    +G   L+  +RV ITP K++  GPE  ++N VV+H      +F+RV+F
Sbjct: 370  HNV-LLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTF 429

Query: 324  VDEELDKLHSIDLAPRSSSPENSK--RTRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLR 383
            VDE+  KL S  ++ R      SK  +T +Y R+LS+LK G  IG K FEFLAFSASQLR
Sbjct: 430  VDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLR 489

Query: 384  ENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKHEIEVIP 443
             NS WMFAS   L+A  IR WMG F  IR+V+K AAR+GQ F SSR+T  V + ++EVIP
Sbjct: 490  GNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIP 549

Query: 444  DVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLF-SHTPSAFQIRYAGYKGVVAIDPMS 503
            D+E+      + FSDGIGK+    AK+VA   GL  ++ PSAFQIRY GYKGV+AIDPMS
Sbjct: 550  DIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMS 609

Query: 504  EKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF--------- 563
               LSLR SM K+ S +  L++ SWSK QPC++NR++I+LLST GI D++F         
Sbjct: 610  SIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMR 669

Query: 564  -------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKLLDLRT 623
                              +   E  + +K LL  Y  + EP+L+M+L+  + N+L D+RT
Sbjct: 670  ETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRT 729

Query: 624  KSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDN------------FVAKGKV 683
            + +I VPKGR ++GCLDET  LEYGQV+I      +  +D+                GKV
Sbjct: 730  RCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKV 789

Query: 684  VVAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWD 743
             + KNPCLH GD+RVL+A+    L  M DC+VFPQ+G+RPHPNECSG +LDGD+YF+ WD
Sbjct: 790  AITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWD 849

Query: 744  SELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPK 803
             +L   K   PM Y       +DH VT+EE+QK+F +YM+ND LG I+ AH + AD++P 
Sbjct: 850  DKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPL 909

Query: 804  KAMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLF 863
            KA S EC++LA L S+AVDF KTG PA +P  LR  EYPDFM++  KP Y+SNGVLGKL+
Sbjct: 910  KARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLY 969

Query: 864  R---GVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMD 923
            R   G  + S D  AL   S +  +  YDPD+EV G +++L+ A +Y   Y+ KL  LM+
Sbjct: 970  RSAMGHMEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMN 1029

Query: 924  YYD---KPELVSGNILRMAKSFDKRND------LEQITFAIKSLRKEVRSWFNENESKST 962
            YY    + E+++GNI R    + KR++       ++I  A+ +L +E R W   +  +  
Sbjct: 1030 YYRAELEDEILTGNI-RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKE-- 1089

[Close]

BLAST of PI0006586 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 665.2 bits (1715), Expect = 1.2e-189
Identity = 391/1002 (39.02%), Postives = 567/1002 (56.59%), Query Frame = 0


Query: 38   RKLWFYLSYEVDEYKMELCFENILSVEFCCPLNQPSK---FLLIQNF------------- 97
            R++ F++    D YK+E+ FE+I+    CC     S+   FLL   +             
Sbjct: 141  RRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVHIA 200

Query: 98   -QETSSSQLHSNESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLPPFFQTLVGFK-- 157
             +  S       E   F WIR  DF+ S  IG S   CL++     +   F  L  ++  
Sbjct: 201  TKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYRED 260

Query: 158  ---LTYAPFILHKPSSSFFSNSNLVPIITPP-QPFHISFKILFKINVLL--QHGYLFGPT 217
               LTY          +F S + +VP++          ++ILF++N L+  Q   LF  +
Sbjct: 261  TLSLTYV------DGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAAS 320

Query: 218  LDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 277
             D E  +++         +   L+KL      CY P  ++K Q  S  +  ++   P  +
Sbjct: 321  -DMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQS--VVKKMKHSPASA 380

Query: 278  ----LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLH 337
                 +  ++   R  +TP K+Y  GPE   +N VV++F + + +F+RV+FV+E+  KL 
Sbjct: 381  YKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLP 440

Query: 338  SIDLAPRSSSPENSK--RTRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFAS 397
            +  L+  S      K  RT +Y+RVLS+L  GI +G K+FEFLAFSASQLR NS WMFAS
Sbjct: 441  ANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFAS 500

Query: 398  REGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNI 457
             E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E IPD+EV     
Sbjct: 501  NEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGA 560

Query: 458  MHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSM 517
             +CFSDGIGK+    AK+VA+KCGL SH PSAFQIRY GYKGV+A+D  S +KLSLR SM
Sbjct: 561  DYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSM 620

Query: 518  LKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVFKCWSLMSPGEMTSILKD-- 577
            LK+ S N  L+V  W++  PCFLNR++I LLST GI D +F+    +    + ++L+D  
Sbjct: 621  LKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRD 680

Query: 578  ---------------------LLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKG 637
                                 LL  Y  + EP+L+MML+    ++L +L+++ RI VPKG
Sbjct: 681  AALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKG 740

Query: 638  RTMLGCLDETRSLEYGQVFIHCFVP------------RRSSEDNFVAKGKVVVAKNPCLH 697
            R ++GC+DE   LEYGQV++   +             R+  E+  V  GKVVV KNPCLH
Sbjct: 741  RILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLH 800

Query: 698  LGDVRVLDAVNVKALHHMA--DCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 757
             GD+RVLDA+           DC++FPQKG+RPHPNECSG +LDGD +FV WD ++   +
Sbjct: 801  PGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSE 860

Query: 758  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 817
               PM Y  +    +DHDVT+EE+ K+F +YM++D LG I+ AH V AD++P+KA S +C
Sbjct: 861  MDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKC 920

Query: 818  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 877
            ++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+S  V GKL+R VK   
Sbjct: 921  LELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK--- 980

Query: 878  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 937
            S +   +  +    T  YD  +E  GFE ++  A  ++  Y  KL +LM YY   ++ E+
Sbjct: 981  SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEI 1040

Query: 938  VSGNI----LRMAKSFDKRNDL-EQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARA 964
            ++G +    + +A+   +  D+ ++IT ++K L KE   WF     + + +D + +   A
Sbjct: 1041 LTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-----EKSCEDEQQKKKLA 1100

[Close]

BLAST of PI0006586 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.6e-146
Identity = 353/953 (37.04%), Postives = 506/953 (53.10%), Query Frame = 0


Query: 99   WIRDVDFTPSSCIGQSFALCLQLSPPHH------LPPF-FQTLVGFKLTYAPFILHKPSS 158
            WIR  DFT    IG+  +  + +SP +       L  F  + +   ++ + P I ++P  
Sbjct: 250  WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPC- 309

Query: 159  SFFSNSNLVPIITPPQPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYI 218
              F                ISF+I+F +N +L  G      L + FF L+ +     D  
Sbjct: 310  --FGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ--PKDVN 369

Query: 219  EHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVY 278
              +L+ L   K   +   K LK   +  +I        +    + +  + R+ ITP + Y
Sbjct: 370  IASLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAY 429

Query: 279  FCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSPENSKR 338
               PE  LSNRV+R +    + FLRV+F+DE +  ++S         +    +S   S++
Sbjct: 430  CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQK 489

Query: 339  TRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQ 398
            T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG F+ 
Sbjct: 490  TYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD 549

Query: 399  IRNVAKYAARLGQSFGSSRKTLCVEKHEIEV-IPDVEVERKNIMHCFSDGIGKLFETLAK 458
             +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       + FSDGIG +   LA 
Sbjct: 550  -KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLAD 609

Query: 459  KVAEKCGLFSH-TPSAFQIRYAGYKGVVAIDPMSEK--KLSLRKSMLKYMSLNTQLDVLS 518
            +V EK  L  H +P A+QIRYAG+KGVVA  P      +L+LR SM K+ S +T L++ S
Sbjct: 610  EVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICS 669

Query: 519  WSKYQPCFLNRQVINLLSTFGIGDDVFKCWSLMSP--GEMTSILKD-------------- 578
            W+++QP FLNRQ+I LLS  G+ D++F  W +      ++  IL D              
Sbjct: 670  WTRFQPGFLNRQIITLLSVLGVPDEIF--WDMQESMLYKLNRILDDTDVAFEVLTASCAE 729

Query: 579  --------LLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSL 638
                    L + +    EP L  ML + R  +L  LR KSRIFV  GR ++GCLDE   L
Sbjct: 730  QGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGIL 789

Query: 639  EYGQVFI--------HCFVP-----RRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNV 698
            E+GQ FI        +CF       + +  D  V KG V +AKNPCLH GDVR+L+AV+V
Sbjct: 790  EHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDV 849

Query: 699  KALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSEL--TCIKQVKPMSYEPAPT 758
              LHHM DC++FPQKG RPH NE SGS+LDGD+YFV WD +L     K    M Y+ A  
Sbjct: 850  PQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEE 909

Query: 759  MQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAECIKLAKLFSIAVD 818
              L   V  +++  +FA  + N++LGTI NAH V AD++   AM  EC+ LA+L + AVD
Sbjct: 910  KSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVD 969

Query: 819  FPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNALEIFSR 878
            FPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D  A    S 
Sbjct: 970  FPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEEST 1029

Query: 879  EVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPELVSGNILRMAKS 938
            + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y    + E+V+G+I  M K 
Sbjct: 1030 DPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKY 1089

Query: 939  FDKRND--LEQITFAIKSLRKEVRSWFNE----NESKSTYDDIKDEYARASAWYCVTYHP 977
              K+     E++  +  SL+KE R  F E    +E+ S  +       +ASAWY VTYHP
Sbjct: 1090 TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHP 1149

[Close]

BLAST of PI0006586 vs. ExPASy TrEMBL
Match: A0A0A0KRH3 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)

HSP 1 Score: 1799.6 bits (4660), Expect = 0.0e+00
Identity = 888/1057 (84.01%), Postives = 944/1057 (89.31%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYI+HALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSS ENS+RTRVYDRV+SVLKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQLRENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNIM+CFSDGIGK+ +TLAKKVAEKCGL +HTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP S+KKLSLR SMLKYMSL+TQLDVLSWSKYQPCFLNRQVINLLST GIGDDVF    
Sbjct: 581  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM NEEPFLNMML+TFRANKL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VPRRSSE NFV KGK+VVAKNPC
Sbjct: 701  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVRVLDAV+VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YF CWD ELTCIK
Sbjct: 761  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPM+YEPAPT+QL+HDVTIEE+Q+YFANYMVND +G IANAHTVFADKN KKAMS EC
Sbjct: 821  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDVN  EIF+REVATK YDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGN+L+MAKSFDKRNDLEQITFA+KSLRKEVRSWFNENESK TYDDI+DEYA+ASAWY 
Sbjct: 1001 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYY 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDG---- 1008
            VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKR+KM+L+NS+P+SSL HNFDG    
Sbjct: 1061 VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYML 1120

[Close]

BLAST of PI0006586 vs. ExPASy TrEMBL
Match: E5GB63 (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 1781.1 bits (4612), Expect = 0.0e+00
Identity = 881/1040 (84.71%), Postives = 929/1040 (89.33%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KG LGSMISKDKMRVIWEGEKW+VEFGNG+RKLWFYLSYEVD+YKMELCFENI
Sbjct: 97   MERMEDVKGQLGSMISKDKMRVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENI 156

Query: 61   LSVEFCCPLNQPSKFLLIQ---------------------------NFQET---SSSQLH 120
            LSVEF CPLNQPSKF LIQ                            F++T   SSS L+
Sbjct: 157  LSVEFRCPLNQPSKFFLIQVSSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLY 216

Query: 121  SNESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPS 180
            SNES SF WIRDVDFTPSSCIGQSF LCLQ SP HHLPPFFQTLVG+K+TY PFIL K  
Sbjct: 217  SNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRK-G 276

Query: 181  SSFFSNSNLVPIITPPQPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDY 240
            SSF SNSNLVPIITPPQ F IS+KILFKIN LLQ GYL GPTLDDEFFRLVDSS FHPDY
Sbjct: 277  SSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDY 336

Query: 241  IEHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKV 300
            IEHALEKLF+LKECCYKPQKWLKDQYLSYY+SNQLPWKPN+SLDDGLVYVHRVQITPLKV
Sbjct: 337  IEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKV 396

Query: 301  YFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDR 360
            YFCGPEANLSNRVVR FIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPEN+ RTRVYDR
Sbjct: 397  YFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDR 456

Query: 361  VLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAK 420
            V+SVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASR+GLSA DIREWMGDFRQIRNVAK
Sbjct: 457  VVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAK 516

Query: 421  YAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCG 480
            YAARLGQSFGSSRKTLCV++HEIEVIPDVEVERKNIM+CFSDGIGK+ +TLAKKVA+KCG
Sbjct: 517  YAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCG 576

Query: 481  LFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLN 540
            L  HTPSAFQIRYAGYKGVVAIDP SEKKLSLRKSMLKYMSL+TQLDVL WSKYQPCFLN
Sbjct: 577  LTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLN 636

Query: 541  RQVINLLSTFGIGDDVF----------------------KCWSLMSPGEMTSILKDLLSF 600
            RQVINLLST GIGDDVF                      +   LMSPGEMTSILK+LLSF
Sbjct: 637  RQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSF 696

Query: 601  YMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVP 660
            YM NEEPFLNMML TFRANKLLDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VP
Sbjct: 697  YMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVP 756

Query: 661  RRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECS 720
             RSSE NFV KGKVVVAKNPCLH GDVR+LDA++VKALHHM DCVVFPQKGKRPHPNECS
Sbjct: 757  GRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECS 816

Query: 721  GSNLDGDMYFVCWDSELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGT 780
            GS+LDGD+YFVCWDSELTCIKQVKPMSYEPAP++QLDHDVTIEEVQKYFANYMVND LG 
Sbjct: 817  GSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGA 876

Query: 781  IANAHTVFADKNPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPN 840
            IANAHTVFADKN KKAMSAECIKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKP+
Sbjct: 877  IANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPD 936

Query: 841  KPTYVSNGVLGKLFRGVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKT 900
            KPTYVSNGVLGKLFRGVKDVSSDVN  EIF++EVATKCYDPDMEVDGFEKYLREAFDYKT
Sbjct: 937  KPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKT 996

Query: 901  RYDFKLRNLMDYY---DKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNEN 960
            +YDFKL NLMDYY    +PELVSGNIL+MAKSFDKRNDLEQI FA+KSLRKEVRSWFNEN
Sbjct: 997  KYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNEN 1056

Query: 961  ESKSTYDDIK-DEYARASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREK 985
            ESK TY+DI+ DEYARASAWYCVTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKREK
Sbjct: 1057 ESKYTYEDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREK 1116

[Close]

BLAST of PI0006586 vs. ExPASy TrEMBL
Match: A0A1D8RK46 (RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=2 SV=1)

HSP 1 Score: 1778.1 bits (4604), Expect = 0.0e+00
Identity = 869/1016 (85.53%), Postives = 924/1016 (90.94%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYI+HALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSS ENS+RTRVYDRV+SVLKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQL+ENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLKENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNI++CFSDGIGK+ +TLAKKVAEKCGL +HTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP S+KKLSLR SMLKYMSL+TQLDVLSWSKYQPCFLNRQVINLLST GIGDDVF    
Sbjct: 581  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM NEEPFLNMML+TFRANKL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VPRRSSE NFV KGK+VVAKNPC
Sbjct: 701  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVRVLDAV+VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YF CWD ELTCIK
Sbjct: 761  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPM+YEPAPT+QL+HDVTIEE+Q+YFANYMVND +G IANAHTVFADKN KKAMS EC
Sbjct: 821  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDVN  EIF+REVATK YDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGN+L+MAKSFDKRNDLEQITFA+KSLRKEVRSWFNENESK TYDDI+DEYA+ASAWY 
Sbjct: 1001 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYY 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDG 983
            VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKR+KM+L+NS+P+SSL HNFDG
Sbjct: 1061 VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]

BLAST of PI0006586 vs. ExPASy TrEMBL
Match: A0A0S1YCZ4 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)

HSP 1 Score: 1775.4 bits (4597), Expect = 0.0e+00
Identity = 872/1012 (86.17%), Postives = 920/1012 (90.91%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYIEHALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSSPENS+RTRVYDRV+S+LKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQLRENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNIM+CFSDGIGK+ +TLAKKVAEKCGL SHTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP SEKKLSLRKSMLKYMSL+TQLDVL WSKYQPCFLNRQVINLLST GI DDVF    
Sbjct: 581  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM N+EPFLNMML+TFRA+KL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDLRTKSRIFVPKGRTM+GCLDET++LEYGQVF+HC +P RSSE NFV KGKVVVAKNPC
Sbjct: 701  LDLRTKSRIFVPKGRTMMGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVR+LDA++VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YFVCWD+ELTCIK
Sbjct: 761  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPMSY+PAPT+QLDHDVTIEEVQ+YFANYMVND LG IANAHTVFADKN KKAMSAEC
Sbjct: 821  QVKPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDV+A EIF+REVATKCYDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGNIL+MAKSFDKR DLEQI FA+KSLRKEVR WFNENESKSTYDDI+DEYARASAWYC
Sbjct: 1001 VSGNILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYC 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLH 979
            VTYHPDYWGCYNEG +RDHFLSFPWCVADKLIQIKREKMS+RNS P SSLLH
Sbjct: 1061 VTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]

BLAST of PI0006586 vs. ExPASy TrEMBL
Match: A0A5D3E365 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00630 PE=3 SV=1)

HSP 1 Score: 1670.2 bits (4324), Expect = 0.0e+00
Identity = 832/1010 (82.38%), Postives = 880/1010 (87.13%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KG LGSMISKDKMR+             G  +++                   
Sbjct: 97   MERMEDVKGQLGSMISKDKMRM------------QGAPRIF------------------- 156

Query: 61   LSVEFCCPLNQPSKFLLIQNFQETSSSQLHSNESISFGWIRDVDFTPSSCIGQSFALCLQ 120
                              +    +SSS L+SNES SF WIRDVDFTPSSCIGQSF LCLQ
Sbjct: 157  ------------------RKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQ 216

Query: 121  LSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHISFKILFKIN 180
             SP HHLPPFFQTLVG+K+TYAPFIL K  SSF SNSNLVPIITPPQ F IS+KILFKIN
Sbjct: 217  FSPSHHLPPFFQTLVGYKVTYAPFILRK-GSSFVSNSNLVPIITPPQAFDISYKILFKIN 276

Query: 181  VLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKWLKDQYLSYY 240
             LLQ GYL GPTLDDEFFRLVDSS FHPDYIEHALEKLF+LKECCYKPQKWLKDQYLS+Y
Sbjct: 277  ALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSFY 336

Query: 241  ISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDIDNFLRVSFV 300
            +SNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DIDNFLRVSFV
Sbjct: 337  VSNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFV 396

Query: 301  DEELDKLHSIDLAPRSSSPENS-KRTRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLREN 360
            DEELDKLHSIDLAPRSSSPENS KRTRVYDRV+SVLKNGIVIGDKKFEFLAFSASQLREN
Sbjct: 397  DEELDKLHSIDLAPRSSSPENSTKRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLREN 456

Query: 361  SFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKHEIEVIPDV 420
            SFWMFASREGLSA DIREWMGDFRQIRNVAKYA RLGQSFGSSRKTLCVE+HEIEVIPDV
Sbjct: 457  SFWMFASREGLSAADIREWMGDFRQIRNVAKYATRLGQSFGSSRKTLCVEEHEIEVIPDV 516

Query: 421  EVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVAIDPMSEKK 480
            EVERKN+M+CFSDGIGK+ +TLAKKVAEKCGL SHTPSAFQIRYAGYKGVVAIDP SEKK
Sbjct: 517  EVERKNVMYCFSDGIGKISKTLAKKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSEKK 576

Query: 481  LSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF------------ 540
            LSLRKSMLKYMSL+TQLDVL WSKYQPCFLNRQVI+LLST GIGD+VF            
Sbjct: 577  LSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVISLLSTIGIGDNVFVRKQKEAIDQLD 636

Query: 541  ----------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSR 600
                      +   LMSPGEMTSILKDLLSFYM NEEPFLNMML+TFRANKLLDL+TKSR
Sbjct: 637  SILEDQSRALEVLELMSPGEMTSILKDLLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSR 696

Query: 601  IFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPCLHLGDVRV 660
            IFVPKGRTM+GCLDETR+LEYGQVF+HC VP RSSE NFV KGKVVVAKNPCLH GDVR+
Sbjct: 697  IFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCLHPGDVRL 756

Query: 661  LDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIKQVKPMSYE 720
            LDA++VKALHHM DCVVFPQ GKRPHPNECSGS+LDGD+YFVCWDSELTCIKQVKPMSY+
Sbjct: 757  LDAIDVKALHHMVDCVVFPQNGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQVKPMSYK 816

Query: 721  PAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAECIKLAKLFS 780
            PAPT+QLDHDVTIEEVQK+FANYMVND LG IANAHTVFADKNPKKAMSAECIKLAKLFS
Sbjct: 817  PAPTIQLDHDVTIEEVQKHFANYMVNDGLGAIANAHTVFADKNPKKAMSAECIKLAKLFS 876

Query: 781  IAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNALEI 840
            IAVDF KTGVPANLP NLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVSSDVN+ EI
Sbjct: 877  IAVDFSKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSSDVNSFEI 936

Query: 841  FSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPELVSGNILRM 900
            F+REVAT+CYDPDMEVDGFEKYLREAF YKT+YDFKL NLMDYY    +PELVSGNIL+M
Sbjct: 937  FTREVATRCYDPDMEVDGFEKYLREAFHYKTKYDFKLGNLMDYYGIKTEPELVSGNILKM 996

Query: 901  AKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYCVTYHPDYW 960
            AKSFDKRNDLEQITFA+KSLRKEVRSWFNENE+KS YDDIKDEYARASAWYCVTYHPDYW
Sbjct: 997  AKSFDKRNDLEQITFAMKSLRKEVRSWFNENENKSRYDDIKDEYARASAWYCVTYHPDYW 1056

Query: 961  GCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDGVS 985
            GCYNEG QRDHFLSFPWCVADKLI+IKREKMSLRNS PMSSLLHNFDGV+
Sbjct: 1057 GCYNEGKQRDHFLSFPWCVADKLIEIKREKMSLRNSSPMSSLLHNFDGVN 1056

[Close]

BLAST of PI0006586 vs. NCBI nr
Match: XP_031741021.1 (probable RNA-dependent RNA polymerase 1 [Cucumis sativus])

HSP 1 Score: 1798.1 bits (4656), Expect = 0.0e+00
Identity = 887/1057 (83.92%), Postives = 944/1057 (89.31%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYI+HALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSS ENS+RTRVYDRV+SVLKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQLRENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNI++CFSDGIGK+ +TLAKKVAEKCGL +HTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP S+KKLSLR SMLKYMSL+TQLDVLSWSKYQPCFLNRQVINLLST GIGDDVF    
Sbjct: 581  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM NEEPFLNMML+TFRANKL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VPRRSSE NFV KGK+VVAKNPC
Sbjct: 701  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVRVLDAV+VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YF CWD ELTCIK
Sbjct: 761  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPM+YEPAPT+QL+HDVTIEE+Q+YFANYMVND +G IANAHTVFADKN KKAMS EC
Sbjct: 821  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDVN  EIF+REVATK YDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGN+L+MAKSFDKRNDLEQITFA+KSLRKEVRSWFNENESK TYDDI+DEYA+ASAWY 
Sbjct: 1001 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYY 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDG---- 1008
            VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKR+KM+L+NS+P+SSL HNFDG    
Sbjct: 1061 VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDGCYML 1120

[Close]

BLAST of PI0006586 vs. NCBI nr
Match: ADN33705.1 (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])

HSP 1 Score: 1781.1 bits (4612), Expect = 0.0e+00
Identity = 881/1040 (84.71%), Postives = 929/1040 (89.33%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KG LGSMISKDKMRVIWEGEKW+VEFGNG+RKLWFYLSYEVD+YKMELCFENI
Sbjct: 97   MERMEDVKGQLGSMISKDKMRVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENI 156

Query: 61   LSVEFCCPLNQPSKFLLIQ---------------------------NFQET---SSSQLH 120
            LSVEF CPLNQPSKF LIQ                            F++T   SSS L+
Sbjct: 157  LSVEFRCPLNQPSKFFLIQVSSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLY 216

Query: 121  SNESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPS 180
            SNES SF WIRDVDFTPSSCIGQSF LCLQ SP HHLPPFFQTLVG+K+TY PFIL K  
Sbjct: 217  SNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRK-G 276

Query: 181  SSFFSNSNLVPIITPPQPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDY 240
            SSF SNSNLVPIITPPQ F IS+KILFKIN LLQ GYL GPTLDDEFFRLVDSS FHPDY
Sbjct: 277  SSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDY 336

Query: 241  IEHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKV 300
            IEHALEKLF+LKECCYKPQKWLKDQYLSYY+SNQLPWKPN+SLDDGLVYVHRVQITPLKV
Sbjct: 337  IEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKV 396

Query: 301  YFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDR 360
            YFCGPEANLSNRVVR FIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPEN+ RTRVYDR
Sbjct: 397  YFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDR 456

Query: 361  VLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAK 420
            V+SVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASR+GLSA DIREWMGDFRQIRNVAK
Sbjct: 457  VVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAK 516

Query: 421  YAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCG 480
            YAARLGQSFGSSRKTLCV++HEIEVIPDVEVERKNIM+CFSDGIGK+ +TLAKKVA+KCG
Sbjct: 517  YAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCG 576

Query: 481  LFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLN 540
            L  HTPSAFQIRYAGYKGVVAIDP SEKKLSLRKSMLKYMSL+TQLDVL WSKYQPCFLN
Sbjct: 577  LTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLN 636

Query: 541  RQVINLLSTFGIGDDVF----------------------KCWSLMSPGEMTSILKDLLSF 600
            RQVINLLST GIGDDVF                      +   LMSPGEMTSILK+LLSF
Sbjct: 637  RQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSF 696

Query: 601  YMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVP 660
            YM NEEPFLNMML TFRANKLLDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VP
Sbjct: 697  YMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVP 756

Query: 661  RRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECS 720
             RSSE NFV KGKVVVAKNPCLH GDVR+LDA++VKALHHM DCVVFPQKGKRPHPNECS
Sbjct: 757  GRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECS 816

Query: 721  GSNLDGDMYFVCWDSELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGT 780
            GS+LDGD+YFVCWDSELTCIKQVKPMSYEPAP++QLDHDVTIEEVQKYFANYMVND LG 
Sbjct: 817  GSDLDGDLYFVCWDSELTCIKQVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGA 876

Query: 781  IANAHTVFADKNPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPN 840
            IANAHTVFADKN KKAMSAECIKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKP+
Sbjct: 877  IANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPD 936

Query: 841  KPTYVSNGVLGKLFRGVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKT 900
            KPTYVSNGVLGKLFRGVKDVSSDVN  EIF++EVATKCYDPDMEVDGFEKYLREAFDYKT
Sbjct: 937  KPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKT 996

Query: 901  RYDFKLRNLMDYY---DKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNEN 960
            +YDFKL NLMDYY    +PELVSGNIL+MAKSFDKRNDLEQI FA+KSLRKEVRSWFNEN
Sbjct: 997  KYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNEN 1056

Query: 961  ESKSTYDDIK-DEYARASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREK 985
            ESK TY+DI+ DEYARASAWYCVTYHPDYWG YNEG QRDHFLSFPWCVADKLIQIKREK
Sbjct: 1057 ESKYTYEDIEDDEYARASAWYCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREK 1116

[Close]

BLAST of PI0006586 vs. NCBI nr
Match: KAE8648600.1 (hypothetical protein Csa_007966 [Cucumis sativus])

HSP 1 Score: 1779.2 bits (4607), Expect = 0.0e+00
Identity = 870/1016 (85.63%), Postives = 924/1016 (90.94%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYI+HALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSS ENS+RTRVYDRV+SVLKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQLRENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNI++CFSDGIGK+ +TLAKKVAEKCGL +HTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP S+KKLSLR SMLKYMSL+TQLDVLSWSKYQPCFLNRQVINLLST GIGDDVF    
Sbjct: 581  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM NEEPFLNMML+TFRANKL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VPRRSSE NFV KGK+VVAKNPC
Sbjct: 701  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVRVLDAV+VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YF CWD ELTCIK
Sbjct: 761  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPM+YEPAPT+QL+HDVTIEE+Q+YFANYMVND +G IANAHTVFADKN KKAMS EC
Sbjct: 821  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDVN  EIF+REVATK YDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGN+L+MAKSFDKRNDLEQITFA+KSLRKEVRSWFNENESK TYDDI+DEYA+ASAWY 
Sbjct: 1001 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYY 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDG 983
            VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKR+KM+L+NS+P+SSL HNFDG
Sbjct: 1061 VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]

BLAST of PI0006586 vs. NCBI nr
Match: AOW73471.1 (RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus])

HSP 1 Score: 1778.1 bits (4604), Expect = 0.0e+00
Identity = 869/1016 (85.53%), Postives = 924/1016 (90.94%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYI+HALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSS ENS+RTRVYDRV+SVLKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQL+ENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLKENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNI++CFSDGIGK+ +TLAKKVAEKCGL +HTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIIYCFSDGIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP S+KKLSLR SMLKYMSL+TQLDVLSWSKYQPCFLNRQVINLLST GIGDDVF    
Sbjct: 581  IDPTSKKKLSLRNSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM NEEPFLNMML+TFRANKL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDL+TKSRIFVP+GRTM+GCLDETR+LEYGQVF+HC VPRRSSE NFV KGK+VVAKNPC
Sbjct: 701  LDLKTKSRIFVPEGRTMIGCLDETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVRVLDAV+VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YF CWD ELTCIK
Sbjct: 761  LHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPM+YEPAPT+QL+HDVTIEE+Q+YFANYMVND +G IANAHTVFADKN KKAMS EC
Sbjct: 821  QVKPMNYEPAPTIQLNHDVTIEEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDVN  EIF+REVATK YDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVNTFEIFTREVATKYYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGN+L+MAKSFDKRNDLEQITFA+KSLRKEVRSWFNENESK TYDDI+DEYA+ASAWY 
Sbjct: 1001 VSGNVLKMAKSFDKRNDLEQITFAMKSLRKEVRSWFNENESKFTYDDIEDEYAKASAWYY 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLHNFDG 983
            VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKR+KM+L+NS+P+SSL HNFDG
Sbjct: 1061 VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115

[Close]

BLAST of PI0006586 vs. NCBI nr
Match: ALM88235.1 (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 1775.4 bits (4597), Expect = 0.0e+00
Identity = 872/1012 (86.17%), Postives = 920/1012 (90.91%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            MERMED+KGHLGSMIS  KMRVIWEGEKWSVEFGNG RKLWFYLSYEVDEYKMELCFENI
Sbjct: 101  MERMEDVKGHLGSMISNGKMRVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENI 160

Query: 61   LSVEFCCPLNQPSKFLLIQ------NFQET---SSSQLHSNESISFGWIRDVDFTPSSCI 120
            LSVEF CPLN+PSKF LIQ       F++T   SSS L+SN+S SF WIRDVDFTPSSCI
Sbjct: 161  LSVEFRCPLNEPSKFFLIQLQGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCI 220

Query: 121  GQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSNLVPIITPPQPFHI 180
            GQSF +CLQLSP HHLPPFFQTLVG+K+TYAPFILHK  SS  SNSNLVPIITPPQ F I
Sbjct: 221  GQSFTICLQLSPSHHLPPFFQTLVGYKVTYAPFILHK-GSSLVSNSNLVPIITPPQAFDI 280

Query: 181  SFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKW 240
            S+KILFKIN LLQHGYL GPTLDDEFFRLVDSS FH DYIEHALEKLF+LKECCYKPQKW
Sbjct: 281  SYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKW 340

Query: 241  LKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDI 300
            LKDQYLSYY SNQLPWK NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR FI DI
Sbjct: 341  LKDQYLSYYTSNQLPWKSNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDI 400

Query: 301  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKFEFLAF 360
            DNFLRVSFVDEELDKLHSIDLAPRSSSPENS+RTRVYDRV+S+LKNGIVIG+KKFEFLAF
Sbjct: 401  DNFLRVSFVDEELDKLHSIDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAF 460

Query: 361  SASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKH 420
            SASQLRENSFWMFASREGLSA DIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVE+H
Sbjct: 461  SASQLRENSFWMFASREGLSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEH 520

Query: 421  EIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVA 480
            EIEVIPDVEVERKNIM+CFSDGIGK+ +TLAKKVAEKCGL SHTPSAFQIRYAGYKGVVA
Sbjct: 521  EIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVA 580

Query: 481  IDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVF---- 540
            IDP SEKKLSLRKSMLKYMSL+TQLDVL WSKYQPCFLNRQVINLLST GI DDVF    
Sbjct: 581  IDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQ 640

Query: 541  ------------------KCWSLMSPGEMTSILKDLLSFYMSNEEPFLNMMLQTFRANKL 600
                              +   LMSPGEMTSILK+LLSFYM N+EPFLNMML+TFRA+KL
Sbjct: 641  KEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKL 700

Query: 601  LDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVVVAKNPC 660
            LDLRTKSRIFVPKGRTM+GCLDET++LEYGQVF+HC +P RSSE NFV KGKVVVAKNPC
Sbjct: 701  LDLRTKSRIFVPKGRTMMGCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPC 760

Query: 661  LHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 720
            LH GDVR+LDA++VKALHHM DCVVFPQKGKRPHPNECSGS+LDGD+YFVCWD+ELTCIK
Sbjct: 761  LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIK 820

Query: 721  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 780
            QVKPMSY+PAPT+QLDHDVTIEEVQ+YFANYMVND LG IANAHTVFADKN KKAMSAEC
Sbjct: 821  QVKPMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 880

Query: 781  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 840
            IKLAKLFSIAVDFPKTGVPANLP NLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVS
Sbjct: 881  IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVS 940

Query: 841  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 900
            SDV+A EIF+REVATKCYDPDMEVDGFEKYLREAFDYKT+YDFKL NLMDYY    +PEL
Sbjct: 941  SDVSAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1000

Query: 901  VSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYC 960
            VSGNIL+MAKSFDKR DLEQI FA+KSLRKEVR WFNENESKSTYDDI+DEYARASAWYC
Sbjct: 1001 VSGNILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYC 1060

Query: 961  VTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLRNSFPMSSLLH 979
            VTYHPDYWGCYNEG +RDHFLSFPWCVADKLIQIKREKMS+RNS P SSLLH
Sbjct: 1061 VTYHPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]

BLAST of PI0006586 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1092.0 bits (2823), Expect = 0.0e+00
Identity = 563/1008 (55.85%), Postives = 702/1008 (69.64%), Query Frame = 0


Query: 1    MERMEDLKGHLGSMISKDKMRVIWEGEKWSVEFGNGIRKLWFYLSYEVDEYKMELCFENI 60
            +  +  LK   G  +S  K   +W  +   V FG G+RKL F  S+   +Y++EL +ENI
Sbjct: 94   LHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENI 153

Query: 61   LSVEFCCPLNQPSKFLLIQNFQETSSSQLHSNE-SISFG------------WIRDVDFTP 120
              ++   P  + SKFL+IQ        +      ++ FG            WIR  DFT 
Sbjct: 154  WQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTS 213

Query: 121  SSCIGQSFALCLQLSPPHHLPPFFQTLVGFKLTYAPFILHKPSSSFFSNSN-LVPIITPP 180
            SSCIGQS A CL+L    ++P F +    +    A   L +  SS+ SN+N LVP++ PP
Sbjct: 214  SSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPP 273

Query: 181  QPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCY 240
              F + F+ILFK+N L+Q+  L GP LD +F+RL++   +    I+H LEKLFHL ECCY
Sbjct: 274  PGFSLPFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCY 333

Query: 241  KPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRH 300
            +P  WL+D+Y  +    +LP  P ISLDDGLVY++RVQ+TP +VYF GPE N+SNRV+RH
Sbjct: 334  EPAHWLRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRH 393

Query: 301  FIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENSKRTRVYDRVLSVLKNGIVIGDKKF 360
            +   I+NFLRVSFVDE+L+K+ S+DL+PRSS+    +RT++YDR+ SVL++GIVIGDKKF
Sbjct: 394  YSKYINNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKF 453

Query: 361  EFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTL 420
            EFLAFS+SQLRENS WMFA  + ++A  IR WMGDF  IRNVAKYAARLGQSF SSR+TL
Sbjct: 454  EFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETL 513

Query: 421  CVEKHEIEVIPDVEVERKNIMHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGY 480
             V   EIEVIPDVE+      + FSDGIGK+    A+KVA KCGL   +PSAFQIRY GY
Sbjct: 514  NVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGY 573

Query: 481  KGVVAIDPMSEKKLSLRKSMLKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDV 540
            KGVVA+DP S KKLSLRKSM K+ S NT+LDVL+WSKYQPC++NRQ+I LLST G+ D V
Sbjct: 574  KGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSV 633

Query: 541  F----------------------KCWSLMSPGEMTSILKDL-LSFYMSNEEPFLNMMLQT 600
            F                      +   LM+PGE T+ILK L L  Y  + EPFL+MMLQ 
Sbjct: 634  FEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQN 693

Query: 601  FRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSSEDNFVAKGKVV 660
            FRA+KLL+LRTK+RIF+  GR+M+GCLDETR+LEYGQV +    P R     F+  G VV
Sbjct: 694  FRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVV 753

Query: 661  VAKNPCLHLGDVRVLDAVNVKALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDS 720
            VAKNPCLH GDVRVL AVNV AL+HM DCVVFPQKG RPHPNECSGS+LDGD+YFVCWD 
Sbjct: 754  VAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQ 813

Query: 721  ELTCIKQVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKK 780
            EL   +  +PM Y P PT  LDHDVTIEEV++YFANY+VND LG IANAHT FADK P K
Sbjct: 814  ELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLK 873

Query: 781  AMSAECIKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFR 840
            A S  CI+LAK FS AVDFPKTGV A +P +L V EYPDFM+KP+KPTY S  V+GKLFR
Sbjct: 874  AFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFR 933

Query: 841  GVKDVSSDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY-- 900
             VK+ +  + +++ F+ +VA+K YD DMEVDGFE+Y+ EAF  K  YDFKL NLMDYY  
Sbjct: 934  EVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGI 993

Query: 901  -DKPELVSGNILRMAKSFDKRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYAR 960
              + E++SG I+RM+KSF KR D E I  A+++LRKE  S FN +E +      ++E A+
Sbjct: 994  KTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEE------ENESAK 1053

Query: 961  ASAWYCVTYHPDYWGCYNEGMQRDHFLSFPWCVADKLIQIKREKMSLR 969
            ASAWY VTYH  YWG YNEG+ RDHFLSF WCV DKL++IK+  +  R
Sbjct: 1054 ASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091

[Close]

BLAST of PI0006586 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 665.2 bits (1715), Expect = 8.2e-191
Identity = 391/1002 (39.02%), Postives = 567/1002 (56.59%), Query Frame = 0


Query: 38   RKLWFYLSYEVDEYKMELCFENILSVEFCCPLNQPSK---FLLIQNF------------- 97
            R++ F++    D YK+E+ FE+I+    CC     S+   FLL   +             
Sbjct: 141  RRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTVHIA 200

Query: 98   -QETSSSQLHSNESISFGWIRDVDFTPSSCIGQSFALCLQLSPPHHLPPFFQTLVGFK-- 157
             +  S       E   F WIR  DF+ S  IG S   CL++     +   F  L  ++  
Sbjct: 201  TKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPYYRED 260

Query: 158  ---LTYAPFILHKPSSSFFSNSNLVPIITPP-QPFHISFKILFKINVLL--QHGYLFGPT 217
               LTY          +F S + +VP++          ++ILF++N L+  Q   LF  +
Sbjct: 261  TLSLTYV------DGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISLFAAS 320

Query: 218  LDDEFFRLVDSSIFHPDYIEHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 277
             D E  +++         +   L+KL      CY P  ++K Q  S  +  ++   P  +
Sbjct: 321  -DMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQS--VVKKMKHSPASA 380

Query: 278  ----LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLH 337
                 +  ++   R  +TP K+Y  GPE   +N VV++F + + +F+RV+FV+E+  KL 
Sbjct: 381  YKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLP 440

Query: 338  SIDLAPRSSSPENSK--RTRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFAS 397
            +  L+  S      K  RT +Y+RVLS+L  GI +G K+FEFLAFSASQLR NS WMFAS
Sbjct: 441  ANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFAS 500

Query: 398  REGLSATDIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEKHEIEVIPDVEVERKNI 457
             E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E IPD+EV     
Sbjct: 501  NEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGA 560

Query: 458  MHCFSDGIGKLFETLAKKVAEKCGLFSHTPSAFQIRYAGYKGVVAIDPMSEKKLSLRKSM 517
             +CFSDGIGK+    AK+VA+KCGL SH PSAFQIRY GYKGV+A+D  S +KLSLR SM
Sbjct: 561  DYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDSM 620

Query: 518  LKYMSLNTQLDVLSWSKYQPCFLNRQVINLLSTFGIGDDVFKCWSLMSPGEMTSILKD-- 577
            LK+ S N  L+V  W++  PCFLNR++I LLST GI D +F+    +    + ++L+D  
Sbjct: 621  LKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRD 680

Query: 578  ---------------------LLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKG 637
                                 LL  Y  + EP+L+MML+    ++L +L+++ RI VPKG
Sbjct: 681  AALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKG 740

Query: 638  RTMLGCLDETRSLEYGQVFIHCFVP------------RRSSEDNFVAKGKVVVAKNPCLH 697
            R ++GC+DE   LEYGQV++   +             R+  E+  V  GKVVV KNPCLH
Sbjct: 741  RILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLH 800

Query: 698  LGDVRVLDAVNVKALHHMA--DCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSELTCIK 757
             GD+RVLDA+           DC++FPQKG+RPHPNECSG +LDGD +FV WD ++   +
Sbjct: 801  PGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPSE 860

Query: 758  QVKPMSYEPAPTMQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAEC 817
               PM Y  +    +DHDVT+EE+ K+F +YM++D LG I+ AH V AD++P+KA S +C
Sbjct: 861  MDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQKC 920

Query: 818  IKLAKLFSIAVDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVS 877
            ++LA L S AVDF KTG PA +P  L+  E+PDF+++  KPTY+S  V GKL+R VK   
Sbjct: 921  LELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVK--- 980

Query: 878  SDVNALEIFSREVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPEL 937
            S +   +  +    T  YD  +E  GFE ++  A  ++  Y  KL +LM YY   ++ E+
Sbjct: 981  SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAANEEEI 1040

Query: 938  VSGNI----LRMAKSFDKRNDL-EQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARA 964
            ++G +    + +A+   +  D+ ++IT ++K L KE   WF     + + +D + +   A
Sbjct: 1041 LTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-----EKSCEDEQQKKKLA 1100

[Close]

BLAST of PI0006586 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 521.9 bits (1343), Expect = 1.1e-147
Identity = 353/953 (37.04%), Postives = 506/953 (53.10%), Query Frame = 0


Query: 99   WIRDVDFTPSSCIGQSFALCLQLSPPHH------LPPF-FQTLVGFKLTYAPFILHKPSS 158
            WIR  DFT    IG+  +  + +SP +       L  F  + +   ++ + P I ++P  
Sbjct: 250  WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPC- 309

Query: 159  SFFSNSNLVPIITPPQPFHISFKILFKINVLLQHGYLFGPTLDDEFFRLVDSSIFHPDYI 218
              F                ISF+I+F +N +L  G      L + FF L+ +     D  
Sbjct: 310  --FGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQ--PKDVN 369

Query: 219  EHALEKLFHLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLDDGLVYVHRVQITPLKVY 278
              +L+ L   K   +   K LK   +  +I        +    + +  + R+ ITP + Y
Sbjct: 370  IASLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAY 429

Query: 279  FCGPEANLSNRVVRHFIDDIDNFLRVSFVDEELDKLHS-------IDLAPRSSSPENSKR 338
               PE  LSNRV+R +    + FLRV+F+DE +  ++S         +    +S   S++
Sbjct: 430  CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQK 489

Query: 339  TRVYDRVLSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSATDIREWMGDFRQ 398
            T V+ RV S+L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+ WMG F+ 
Sbjct: 490  TYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD 549

Query: 399  IRNVAKYAARLGQSFGSSRKTLCVEKHEIEV-IPDVEVERKNIMHCFSDGIGKLFETLAK 458
             +NVAK AAR+G  F S+  T+ V  HE++  +PD+E       + FSDGIG +   LA 
Sbjct: 550  -KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLAD 609

Query: 459  KVAEKCGLFSH-TPSAFQIRYAGYKGVVAIDPMSEK--KLSLRKSMLKYMSLNTQLDVLS 518
            +V EK  L  H +P A+QIRYAG+KGVVA  P      +L+LR SM K+ S +T L++ S
Sbjct: 610  EVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICS 669

Query: 519  WSKYQPCFLNRQVINLLSTFGIGDDVFKCWSLMSP--GEMTSILKD-------------- 578
            W+++QP FLNRQ+I LLS  G+ D++F  W +      ++  IL D              
Sbjct: 670  WTRFQPGFLNRQIITLLSVLGVPDEIF--WDMQESMLYKLNRILDDTDVAFEVLTASCAE 729

Query: 579  --------LLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSL 638
                    L + +    EP L  ML + R  +L  LR KSRIFV  GR ++GCLDE   L
Sbjct: 730  QGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGIL 789

Query: 639  EYGQVFI--------HCFVP-----RRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNV 698
            E+GQ FI        +CF       + +  D  V KG V +AKNPCLH GDVR+L+AV+V
Sbjct: 790  EHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDV 849

Query: 699  KALHHMADCVVFPQKGKRPHPNECSGSNLDGDMYFVCWDSEL--TCIKQVKPMSYEPAPT 758
              LHHM DC++FPQKG RPH NE SGS+LDGD+YFV WD +L     K    M Y+ A  
Sbjct: 850  PQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEE 909

Query: 759  MQLDHDVTIEEVQKYFANYMVNDRLGTIANAHTVFADKNPKKAMSAECIKLAKLFSIAVD 818
              L   V  +++  +FA  + N++LGTI NAH V AD++   AM  EC+ LA+L + AVD
Sbjct: 910  KSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVD 969

Query: 819  FPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNALEIFSR 878
            FPKTG   ++P +L+   YPDFM K +  TY SN +LG+L+R VK+V   D  A    S 
Sbjct: 970  FPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEEST 1029

Query: 879  EVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYY---DKPELVSGNILRMAKS 938
            + +   YD  +E+ GFE  + EA+ +K  YD +L  L+  Y    + E+V+G+I  M K 
Sbjct: 1030 DPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKY 1089

Query: 939  FDKRND--LEQITFAIKSLRKEVRSWFNE----NESKSTYDDIKDEYARASAWYCVTYHP 977
              K+     E++  +  SL+KE R  F E    +E+ S  +       +ASAWY VTYHP
Sbjct: 1090 TSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHP 1149

[Close]

BLAST of PI0006586 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-20
Identity = 85/303 (28.05%), Postives = 139/303 (45.87%), Query Frame = 0


Query: 553 EEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFIHCFVPRRSS 612
           +EP L   L      +  DL+   ++ V +   ++G +D T +L+  +V   C +     
Sbjct: 569 DEPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEV---CVILESGQ 628

Query: 613 EDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMAD----CVVFPQKGKRPHPNECS 672
                  G+V+V +NP LH GD+ +L A  VKAL          V FPQKG R   +E +
Sbjct: 629 -----ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIA 688

Query: 673 GSNLDGDMYFVCWDSELTCIKQVKP----MSYEP--------APTMQLDHDVTIEEVQKY 732
           G + DGDMYF+  + EL  ++  KP    +S  P        AP+ QL  +   EE+ + 
Sbjct: 689 GGDFDGDMYFISRNPEL--LENFKPSEPWVSLTPPSKSNSGRAPS-QLSPEELEEELFEM 748

Query: 733 F--ANYMVNDRLGTIANAHTVFADK---------NPKKAMSAECIKLAKLFSIAVDFPKT 792
           F  A +  ++ +G  A++     D+           K  M  + ++L  ++  A+D PK 
Sbjct: 749 FLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK 808

Query: 793 GVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVK-------DVSSDVNALEIF 822
           G    LP  L+   +P +M++  K  + S  +LG +F  VK         SS+++ L  F
Sbjct: 809 GDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCF 857

[Close]

BLAST of PI0006586 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 105/439 (23.92%), Postives = 182/439 (41.46%), Query Frame = 0


Query: 544 DLLSFYMSNEEPFLNMMLQTFRANKLLDLRTKSRIFVPKGRTMLGCLDETRSLEYGQVFI 603
           D++   +  +EP+L   L      +   L+   R  + +   ++G +D T  L+  ++  
Sbjct: 571 DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI-- 630

Query: 604 HCFVPRRSSEDNFVAKGKVVVAKNPCLHLGDVRVLDAVNVKALHHMAD----CVVFPQKG 663
            C +            G V+V +NP LH GD+ VL A  VKAL          V FPQKG
Sbjct: 631 -CVILHSGQ-----ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKG 690

Query: 664 KRPHPNECSGSNLDGDMYFVCWDSEL--------TCIKQVKPMS-YEPAPTMQLDHDVTI 723
            R   +E +G + DGDMYF+  + +L          +   KP   Y      +L  +   
Sbjct: 691 PRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELE 750

Query: 724 EEVQKYF--ANYMVNDRLGTIANA-------HTVFADKNPKKAMSAE--CIKLAKLFSIA 783
           EE+ K F  A +   D +G  A+             D++ K+    +   +KL  ++  A
Sbjct: 751 EELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDA 810

Query: 784 VDFPKTGVPANLPCNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNALEIFS 843
           +D PK G   +LP +L +  +P +M++  K  + S  +LG +F    D     NA E   
Sbjct: 811 LDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIF----DTVDSHNAEEPPP 870

Query: 844 REVATKCYDPDMEVDGFEKYLREAFDYKTRYDFKLRNLMDYYDKPELVSGNILRMAKSFD 903
            E++   Y  D  V   + ++ +   +   Y  ++   M   DK                
Sbjct: 871 SEISKLWYFEDEPVP--KSHMDKFTSWYENYRSEMSQAMMETDKV--------------- 930

Query: 904 KRNDLEQITFAIKSLRKEVRSWFNENESKSTYDDIKDEYARASAWYCVTYHPDYWGCYNE 959
           KRN L       + +++  + ++     + +   +++ Y +A A Y V Y  DY     E
Sbjct: 931 KRNQLTN-----EVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVY--DY--AIQE 967

The following BLAST results are available for this feature:

BLAST of PI0006586 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	0.0e+00	55.85	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q0DXS3	8.7e-246	58.56	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q7XM31	3.5e-194	39.56	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
O82504	1.2e-189	39.02	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q9SG02	1.6e-146	37.04	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of PI0006586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRH3	0.0e+00	84.01	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=...	[more]
E5GB63	0.0e+00	84.71	RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1D8RK46	0.0e+00	85.53	RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=...	[more]
A0A0S1YCZ4	0.0e+00	86.17	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1	[more]
A0A5D3E365	0.0e+00	82.38	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of PI0006586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741021.1	0.0e+00	83.92	probable RNA-dependent RNA polymerase 1 [Cucumis sativus]	[more]
ADN33705.1	0.0e+00	84.71	RNA-dependent RNA polymerase [Cucumis melo subsp. melo]	[more]
KAE8648600.1	0.0e+00	85.63	hypothetical protein Csa_007966 [Cucumis sativus]	[more]
AOW73471.1	0.0e+00	85.53	RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus]	[more]
ALM88235.1	0.0e+00	86.17	RNA-dependent RNA polymerase 1c [Cucumis sativus]	[more]

BLAST of PI0006586 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	55.85	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	8.2e-191	39.02	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.1e-147	37.04	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	4.0e-20	28.05	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	1.2e-19	23.92	RNA-dependent RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 265..528 e-value: 5.6E-76 score: 256.4 coord: 534..805 e-value: 2.6E-89 score: 300.4
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 3..981
None	No IPR available	PANTHER	PTHR23079:SF27	RNA-DEPENDENT RNA POLYMERASE	coord: 3..981

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006586.1	PI0006586.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0001172	transcription, RNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity