PI0006523 (gene) Melon (PI 482460) v1

Overview


Name	PI0006523
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr06: 14126316 .. 14129053 (-)
RNA-Seq Expression	PI0006523
Synteny	PI0006523

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGTCGCTCGCCACCGTTAGACGACGTCAGAGTCGAGTTAAAGCCATTCGAGCCGAGTTGAACTCGTCTGTCCGCGTGAAGCCGATCTCTTCCATTTTATCCGCGAAGTCGATCTTCTCTATTCACCAAGCCACGCCACATAGTCGTTTTCCGGTCAATCTTGTCGCAGCCGTTACCTTGAGGGTGAGTGAGGTTGATTTCTTGTATGGGTTCGGTATACCATAAATTACTAATTTTTTTGGTTGAATTGGATTTGGGTTTGTGTCTAATTAAGGTTTGTTTTTATTGAAGGATTTAACTGAGACCTTGGGGGAATTGTAGAATTTCTTTTCCATCAAAGGTTGAATTGGTTCAACCTTGGCTTTGGGTAAGTTGGTTTGGGGGAAATTTCGCTCACTGTATTAATTTTTGCTCAGCCAGAGTTATAAATTTATTTGCTTTCCTTCATATTTAGAACTAAAATTGTGTGGGGGAGGTTCGTTGTGATAAAGATTTTAGCCAATCTCAAGTAAGGCGTTCTTCTATTGATCTCCTGACTAACAGAGTAAAGTTTTGCTGTAATTTTCTACTGTTTGGTTGATATGTTTGGATGGATTGTACTTGACAGTTGGGTCAAGTTTGGTGTACAGCATAGACTAGATGAAGTTCATGACTTGAGTTGTTACTGTTTCTTAATTTGGAGATGTTGAACTGTCATGTTTTAGGATATGTTATGTTTATGTTGATTGTTACATGCCCTAGGATGACTATGATGTCTGTTAATTTTGGCAGTTAGGTTGGGGACCCTCATGTACGATATCCCTCAGGATTACCATTTTCAACAGTTATGGCTAAGTGCGTGCGACGGGACCACCGGCTTGTCATGTTTCATAAGTGCACCTACACGGTCACTATCACGTGTGTTCTGATAGGATCAAGACATTGTCATGTTAGTTGTACCCCTAACGAAATTTTAGCAGATCACTTAGTGGAGTCAATAGGATCACTTACTGGGTATATTTATACTCATCCTTCTATGTTTAATGTTCAGGCAGAGGTAAAGGTAGAGAGAGACCGACGAATGACCAGGGGAGACTGTGACGAGCCATATGTGGACACAGTCGTTTCCGTATTTCTTTTATTTTCATTATTTTTTAATTTTTTTTAAGTTTAGACCATTGATTGAGCTCTATAGTTATCTACGTTCTCTTTGAAAATTAGATAGGACGACCTAGGATAATGATTTCTTATGATTTCATTTGACTATACTTGTTTAAGCTTCTGATTTGTCATTTTGTTTATTTCTTGATTCTATTTCTTTTAAAGGAAAAGATTTAGTATTTCTAAGTTCTATGGTATTGGTACTTGTTTTCAAATATTGATCATGAATAATTTTTAAAAAATTGGAATTTAGGAAAATGCCACCACGAAGAGGTGCAAGAAGGGGTGGTTGGAGAGGTAGAGGAGTAGGGCGAAATCGACTTGACGAGCAGCCTGTGAAGCAAGCTGCCAACCCGTTGCACCTATCACCCATGCGGATCTCACTGCTATGTCAAATCAGTTGGAACAAAGGTTTAGAGACATTGTGACTCAAGCGTTGGCACAGTACCAGCCAGCACAAGCAACCCCTACTCAACTCCAGTTGCACCATAGAATTTGTCGAACCAGCTGTCAGTTGAGGCTAAGCATCTGCGGGATTTCAGAAAGTACGAACCGCAGACCTTTGATGGATCTCTGGAGAACCCCACCAAGGCAGAGTTGTGGTTGTCCTCGGTGGAACCATCTTTCGATATATGAGGTGTCCTGAAAACCATAAGGTGTAGTGTGCGGTGTTTCTACTAAAAAAGAGAGGTATTGTTTGGTGGCAGTCAACGAAGTGGATGCTTGGTGGAGATGTGAACCAAATTACATGGGACCAGTTCAAGAAAGCTTTTACACCAAGTTCTTCTCCGCTAGTCTAAAGGATGCCAAACGTCAAAAGTTTCAGGACCTGAAGCAAGGACAGATGACAGTTGAGCAGTACAACCAGGAGTTTGACATGTTGTCCCGTTTTTCCCCTGAGTTAGTTGGGATAGAGGCAGCCAGAGCTGAGAGGTTTGTTAGAGGGTTGAGGAAGGAGCTAAGGGGTTTTGTTCAAGGCTTCAAACCGACCATCCAGGCTTAAGCACTGCGCCTAGCAGTGGACATGAGTGCTCAGGAGGAGGAGGATCTGCCAAAATCGTTAGAAGAAGTGGAGATTCTATTGGGCTACCAGAAGAGCACGAACATCAATGAGCGAGAAAGTTAAACCTGAAGCGCAGAACACAAACATAGACTGAACCAGTCCTTCGGACAGTCCAAAGGAGTCCTCAAATTTCATTGGTCCTCAGTCCGTCCTTCTTTATCCATATTAACGATATGAACAGTGGTCTACACCTACAGAAAGACCACGGAGCGGGTCGGTCGGGGAGAGGTTATCAGCCGAGAGGTCTCTTGCTCCAGTTTTAGAAGATCAGCGAAGACCTAGCCATTCCTTGACAAGGACCATCCATGGGGTAGAAGAGAAAAGAAGAGACCCTTTTGTCAGAACTGTAGTAGATACCATGCGGGTCGTTATCTGTTTGGGACCAAAGTTTTCTTCAAATGTAAGCAAGAGGGGCACACAGCTGACAGATGCCCTCTCAGATCTCCCGGCACTCCCTAGACTCAAAGAGGTACATCCCAACAGGGAAAGGTCTTTGCCACCAACCGACAAGAGGCCGAGAGTAGCATAG

mRNA sequence

ATGTCTGAGTCGCTCGCCACCGTTAGACGACGTCAGAGTCGAGTTAAAGCCATTCGAGCCGAGTTGAACTCGTCTGTCCGCGTGAAGCCGATCTCTTCCATTTTATCCGCGAAGTCGATCTTCTCTATTCACCAAGCCACGCCACATAGTCGTTTTCCGGTCAATCTTGTCGCAGCCGTTACCTTGAGGGTTGGGGACCCTCATGTACGATATCCCTCAGGATTACCATTTTCAACAGTTATGGCTAAGTGCGTGCGACGGGACCACCGGCTTGTCATGTTTCATAAGTGCACCTACACGGTCACTATCACGAAAATGCCACCACGAAGAGGTGCAAGAAGGGGTGGTTGGAGAGGTAGAGGAGTAGGGCGAAATCGACTTGACGAGCAGCCTGTGAAGCAAGCTGCCAACCCGTTGCACCTATCACCCATGCGGATCTCACTGCTATGTCAAATCAGTTGGAACAAAGAAAGACCACGGAGCGGGTCGGTCGGGGAGAGGTTATCAGCCGAGAGGTCTCTTGCTCCAGTTTTAGAAGATCAGCGAAGACCTAGCCATTCCTTGACAAGGACCATCCATGGGGTAGAAGAGAAAAGAAGAGACCCTTTTGTCAGAACTGTAGTAGATACCATGCGGGTCGTTATCTGTTTGGGACCAAAGTTTTCTTCAAATGTAAGCAAGAGGGGCACACAGCTGACAGATGCCCTCTCAGATCTCCCGGCACTCCCTAGACTCAAAGAGGTACATCCCAACAGGGAAAGGTCTTTGCCACCAACCGACAAGAGGCCGAGAGTAGCATAG

Coding sequence (CDS)

ATGTCTGAGTCGCTCGCCACCGTTAGACGACGTCAGAGTCGAGTTAAAGCCATTCGAGCCGAGTTGAACTCGTCTGTCCGCGTGAAGCCGATCTCTTCCATTTTATCCGCGAAGTCGATCTTCTCTATTCACCAAGCCACGCCACATAGTCGTTTTCCGGTCAATCTTGTCGCAGCCGTTACCTTGAGGGTTGGGGACCCTCATGTACGATATCCCTCAGGATTACCATTTTCAACAGTTATGGCTAAGTGCGTGCGACGGGACCACCGGCTTGTCATGTTTCATAAGTGCACCTACACGGTCACTATCACGAAAATGCCACCACGAAGAGGTGCAAGAAGGGGTGGTTGGAGAGGTAGAGGAGTAGGGCGAAATCGACTTGACGAGCAGCCTGTGAAGCAAGCTGCCAACCCGTTGCACCTATCACCCATGCGGATCTCACTGCTATGTCAAATCAGTTGGAACAAAGAAAGACCACGGAGCGGGTCGGTCGGGGAGAGGTTATCAGCCGAGAGGTCTCTTGCTCCAGTTTTAGAAGATCAGCGAAGACCTAGCCATTCCTTGACAAGGACCATCCATGGGGTAGAAGAGAAAAGAAGAGACCCTTTTGTCAGAACTGTAGTAGATACCATGCGGGTCGTTATCTGTTTGGGACCAAAGTTTTCTTCAAATGTAAGCAAGAGGGGCACACAGCTGACAGATGCCCTCTCAGATCTCCCGGCACTCCCTAGACTCAAAGAGGTACATCCCAACAGGGAAAGGTCTTTGCCACCAACCGACAAGAGGCCGAGAGTAGCATAG

Protein sequence

MSESLATVRRRQSRVKAIRAELNSSVRVKPISSILSAKSIFSIHQATPHSRFPVNLVAAVTLRVGDPHVRYPSGLPFSTVMAKCVRRDHRLVMFHKCTYTVTITKMPPRRGARRGGWRGRGVGRNRLDEQPVKQAANPLHLSPMRISLLCQISWNKERPRSGSVGERLSAERSLAPVLEDQRRPSHSLTRTIHGVEEKRRDPFVRTVVDTMRVVICLGPKFSSNVSKRGTQLTDALSDLPALPRLKEVHPNRERSLPPTDKRPRVA

Homology

[Close]

BLAST of PI0006523 vs. ExPASy TrEMBL
Match: A0A5A7TEG4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-04
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 105 KMPPRRGARRGGWR-GRGVGRNRLDEQPVKQAANP 139
           KMPPRRGARRGG R GRGVGR + +EQP  QAANP
Sbjct: 12  KMPPRRGARRGGGRGGRGVGRTQSEEQPTMQAANP 46

The following BLAST results are available for this feature:

BLAST of PI0006523 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEG4	9.0e-04	77.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59...	[more]

BLAST of PI0006523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0006523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006523.1	PI0006523.1	mRNA