PI0006501 (gene) Melon (PI 482460) v1

Overview
NamePI0006501
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr08: 4658754 .. 4663700 (+)
RNA-Seq ExpressionPI0006501
SyntenyPI0006501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACAGCGAAACCATTGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTATTGGAAATTCCAGACACCGTTCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGATGCTATTGATGCGGTGACCAGTCTCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTGGGGACAATTCAATGGGCTTTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCTCAAAAGTCGATTGTTGAGATGATAAACGGCATGTCAGAGGATTTTTGTGCCGCTCTTGACGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCATGATGCGAGCCATGGCAAACCAAGCTCCAATTGGAGGAGCTATACAAGTTAACAGGGTGAAAATCCCCGAACCCATACCCTTCTGTGGGCCGATGGACGTAAAAGCCTTGGAGAACTTCATATTTGACCTCGAACAATACTTTCGGGCTACAAGCACTGTTGCGGAGGAAGCGAAAGTGACACTGGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGGTATGCCGAGATCCAAGAAGGACGATGTACGATAGACACCTGGGACAGTTTAAAGAAAGAGCTACGCTCACAGTTCTTCCTTGAGAATGTTAAAATCCTTGCTCGACGGAAGTTACGTGAACTAAAATACACCGGTAGCATTCGGGATTATGTGAAACAGTTTGCGGGACTGATGTTAGACATACGCGATATGTCCGAGAAAGACAAAATTTCTGTTTTGTCGAAATTCCATGGTTTTGTCGCCTTAAACCATGGAATGGCCATAGAGACTTCGTGGTTGTCAAGATGGATGACTTTGACGTAGTATTGGGAATGGAATTTTTGCTAGAACATCAAGTGATACCGATGCCTCTAGCCAAATGCTTAGTGATCACGAGGTCCACTCCCACCGTTGTGCAAACAGACATTCGTCAGCCCAATGGATTAAAATGATTTCGGCCCTACAGTTGAAGAAGGGCCTCGCTCGCGACGAACCGACTTTCATGGCCATTCCGCTTGAACCACTGGGGACTCAGGAAGAGGTAGTTTCGAAGGACATTCTGTGTGTCTTAGAGAAGTATAACAATGTGATGCCTGATAGTTTGCCCAAGACTCTACCACCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACCGCCTGCAAAGAATGCTTATCGTATGGCACCACCCGAGTTGGCAAAACTTCGGAAACAGTTAGACGAGTTGTTGAGTGTAGGATTCATTAGGCCTGCAAAAGCTCCATATGGGGCCCCGATCCTTTTCAAAAGAAGAAGGATGGAAACTTACGTTTGTGCATCGACTATCGTGCATTGAATAAGCTCACAGTTTGCAACAGATACCCACTCCCCATAATCACGGATCTTTTTGACCGCCTACATGGAGCGAAGTATTTCTCGAAACTGGATCTGTAATCGGGATACTATCAAGTAAGGATTGCCGCAGGAGATGAACCAAAGACAACGTGTGTCACCAGGTACGGGGCATTCGAATTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTTTGCACACTGATGAACCAAGTCTTCCATGAATATCTCGACGAATTTGTAGTAGTCTACTTGGACGACATAGTGGTCTATAGCTCAACGATGGAAGAACATAAGGACCATCTCGAAAAGGTTTTTCGAAAATGGAAGGAAAACCAGTTGTACGTCAAACGAGAGAAGTGTTCCTTCGCACAACAACGGATAAGTTTTCTGGGCCATGTGATAGAATGTGGGCGGATTGACATGGAAAATGGGAAGATCGCAGCAATCCGGGATTGGAAATTACTAACCACGGTTTTGGAGTTGCGCTCCTTCTTCGGATTAGCCAACTACTACCGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGTTCGATGACCGAACTGCTGAAAAAGGACAACCAATGGAATTGGACCCCTGAGTGTCAGACTGCTTTCGAGGGGTTAAAACAAGCCATGATCGCAGGGTCAGTTCTTGGGATTGCCGATGTGACAAAACCCTTCGAGGTTGAAATGGATGCATCGGACTATGCACTGGGGGGTGTTCTCCTGCAGAATGGACACCCCATAGCTTATGAGAGTCGGAAGCTAAATGCGGCGGAGAGGAGGTATACAGTCTCCGAGAAGGAAATGCTTGCAGTAGTCCATTGTCTGAGGGCCTGGAGATAATATCTGTTGGGTTCTACATTCGTTGTGAAAACAGATAACAATGCTACTTGCCACTTCTTTAGTCAGCCAAAATTGACTTCGAAGCAGGCAAGGTGGCAGGATTTTCTAGCAGAGTTTGACTTCGATTTCAAGCACAAGAAGGGATCGAATAATCGAGCAGCAGATGCCCTAAGTCGAAAGAGCGAACATGCGGCCTTATGCATGTTAGCTCATCTCCAGACAAGTAAGATTGATGGGTAGATGCGCGACGCCTTGCGAGAATACCTTCAGAAAGATCCCTCTGCCCAAACTGTCATAAACTTAGCGACGGCTGGTAAGACCAGGCAGTTTTGGGTAGAAGAGGGCCTACTAGTGACGAAAGGAAACCGACTGTATGTCCCTAGAGCAGGGGACCTGAGGAAGAAACTCCTGTACGAGTGTCACGACACACTCTGGGCCGGTCATCCGGGGTGGCAAAGGACTTACGCCCTACTGAAAAAGGACTATTTTTGGCCCAATATGAGAGACGACGTTATGCAGTATACGAAGACATGTCTTATCTGCCAACAAGACAAAGTTGAGAAGGCAAAGGTTGTTGGTCTCCTTGAGCCTTTGTCAGTGCCAACACGACCTTGGGAGAGTGTGTCCATGGACTTCATCACTCACCTCCCAAAGGTGGACGACTTTGAGGCCATCTTGGTCGTCATTGACCGATTCTCAAAATATGTCACCTTCATTTCCACGACGAAGTTGTGTTCTGCCGAGCTGACAGCACAGTTGTTTTTCAGACACGTTGTGAAGTTGTGGGGTGTTCCCACGAGTATTGTGAGCGACAGGGATGGTAGATTCATTGGCACTTTCTGGACGAAATTGTTCACCTTCTTGGGGACAAGTTTGAATGTATCCTCAAGCTACCATCCCCAAACCGACAGCCAGACGAAGCGATTCAATTGCATGCTCAAAGAGTATCTACGTCACTTCGTGGATGCAAGATAGAAGAATTGGGTCCAGCTACTGGATGTGGCCCAATTCTGTTTCAATGCTCAGAAGAGCTCGTCAATAGGGAAAAGTCCCTTCGAAATTGTGTGCGGCAGACAGCCTATATTACCGCACCTGGTGGATCATCCCTATGCAGGAAAGAATCCACAAGCTCACAACTTCACAAGAGAATGGAAACAGACAACCGACATCGCTCGAGCTTACTTAGAGAAGGCCTCCAAGCGGATGAAGAAGTGGGTAAGTAAGAAACGTCGTCCCCTCGAGTTTCGGGCGGGAGACCAAGTCCTCATCAAACTGCAAGCAGAACAAGTCCGATTTCGAGGACGCAAAGACCAACGCCTCGTTAGAAAATACGAGGGACCTGTTGAAGTCCTCAGAAAGGTGGAAAACACATCCTACCGAGTGGTGTTACCCACGTGGATGAAAATACATCCAGTAATTCACGTGAGTAACTTGAAGCCCTGCCATCAAGATCCCGACGACACGCAACGCAACGTCGTTCTTCAGCCAAACATCGATCTGAACCAAAGGGAAGAAGATAGAGATGTTGAAGAAATCCTTGCCGACCGGGTAAGGAAGGGTAGAAGACCCACGAGGAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCCCGTGGAAGAGACCAGTTGGGAACGTGTCGAAGACTTAGAAGCTTGGAAGCAGAAGATCGAAGAATTCCATCTTCGCCAGTCGACAGGGACGTCAACTGTTTAAGTGGGGGAGAATGTCACGAACATGCTTGTCCAGGGCGCTGTTTGCCTATGGTCGTGTGCTCAAACATCTCCACACCATCTTACTTTATGCTTTCCTTTACTTTCCATGTCGCTTTATGTTTTCCTTTACTTTTCATGTCGCTTTCTTTTACTTTCTATGTCACTTAGTGACATTTCGCACATTTTGATATGCAAGCCTGACAGATCATAAAATGTTCAAAATGTACTATAGGGGAGTACCATCAGTCACATCCCCGACTAAGCCTTGTCGCGCTCTTTACAATCTAAGCTTTCCTTGCAATTGACAGTCTTCAAAGCTTTCTTTAATGATGTTTTCAACAATTTGCTTTCTCTCTCACATTTTATAAAATCATTTTCTCTCAAAACGTGAAGGGAGGCTACATCATTCCGCGAGTTTGTCCGTGGGTTTCAAATTTCGAACGACTGACTTGTTCATCGAGCTAGAACAAGTGTCACACAATCGCTTGCCTCGTCTTTGAAAGGCTACGATTGTGACACTAGGCGCGTCTGAAGATGTCCAGAAGCTTCCATGACGGTCGGAAAGAATCCATGTCGGTTCGGGTGAGTCATGAAAAGTCTAGAAACCCCTTAATCGACCTTCTAAGGCCGTTTAGGTGTCCCAATGTCGGCTGATTGATCCTATAAATACCCTTAAGGGGGCTCATTTGTAATTCATCCTTGGAAACTCAATAAAAGCTTGTGTATTCATTCTCCTCTCTCAATTACACACTCTTTTGCCTACTTTTGCCTATTCTAACGAAATCCTCTTATTTTCTAGCAAGCTAAGAACCTCCCAAAGGCTTACTTTGGTGTAACCTTGAGCAAGTTCACCTTAGTGCCGCACGTTGAGTTACTTTGA

mRNA sequence

ATGTCTACAGCGAAACCATTGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTATTGGAAATTCCAGACACCGTTCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGATGCTATTGATGCGGTGACCAGTCTCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTGGGGACAATTCAATGGGCTTTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCTCAAAAGTCGATTGTTGAGATGATAAACGGCATGTCAGAGGATTTTTGTGCCGCTCTTGACGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCATGATGCGAGCCATGGCAAACCAAGCTCCAATTGGAGGAGCTATACAAGCGCGTCTGAAGATGTCCAGAAGCTTCCATGACGGTCGGAAAGAATCCATGTCGGTTCGGCAAGCTAAGAACCTCCCAAAGGCTTACTTTGGTGTAACCTTGAGCAAGTTCACCTTAGTGCCGCACGTTGAGTTACTTTGA

Coding sequence (CDS)

ATGTCTACAGCGAAACCATTGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTATTGGAAATTCCAGACACCGTTCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGATGCTATTGATGCGGTGACCAGTCTCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGACACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTGGGGACAATTCAATGGGCTTTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCTCAAAAGTCGATTGTTGAGATGATAAACGGCATGTCAGAGGATTTTTGTGCCGCTCTTGACGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCATGATGCGAGCCATGGCAAACCAAGCTCCAATTGGAGGAGCTATACAAGCGCGTCTGAAGATGTCCAGAAGCTTCCATGACGGTCGGAAAGAATCCATGTCGGTTCGGCAAGCTAAGAACCTCCCAAAGGCTTACTTTGGTGTAACCTTGAGCAAGTTCACCTTAGTGCCGCACGTTGAGTTACTTTGA

Protein sequence

MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLPIKELLTRVDTLEAKAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSEDFCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQARLKMSRSFHDGRKESMSVRQAKNLPKAYFGVTLSKFTLVPHVELL
Homology
[Close]
BLAST of PI0006501 vs. ExPASy TrEMBL
Match: A0A5A7VFC8 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00350 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.6e-53
Identity = 116/188 (61.70%), Postives = 144/188 (76.60%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS+A P GK+  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK D IDAV   ++GLP
Sbjct: 1   MSSANPSGKSQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKIDTIDAVAGRIEGLP 60

Query: 61  IKELLTRVDTLEA--KAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RV+TLEA    GRT+NYERG++S GF AH+EERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELLARVETLEANTNVGRTINYERGESSSGFTAHMEERVSELDSSQKALLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F   LDVVRN+IADV+AR+NLMMRAMANQAP GG I  +++K+        K     R A
Sbjct: 121 FRVTLDVVRNKIADVNARLNLMMRAMANQAPAGGVISVSKVKIPEP-----KPFCGARDA 180

Query: 181 KNLPKAYF 186
           K L    F
Sbjct: 181 KTLENYIF 183

[Close]
BLAST of PI0006501 vs. ExPASy TrEMBL
Match: A0A5D3BYE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00260 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.1e-53
Identity = 119/188 (63.30%), Postives = 144/188 (76.60%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS++ PLGKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV   ++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLE--AKAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+EL+TRVD LE     GRTVNYERGD+S G VAHIEERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F A LDVVRNEIADV+AR++L MRAMANQAP GGAI  +R+K+        K     R A
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEP-----KPFCGARDA 180

Query: 181 KNLPKAYF 186
           K L    F
Sbjct: 181 KALENYIF 183

[Close]
BLAST of PI0006501 vs. ExPASy TrEMBL
Match: A0A5A7VFV0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00330 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.0e-52
Identity = 118/188 (62.77%), Postives = 143/188 (76.06%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           M ++ P GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK D IDAV   ++GLP
Sbjct: 1   MLSSNPSGKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLP 60

Query: 61  IKELLTRVDTLE--AKAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RVD LE    A RTVNYERGD+S GF AH++ERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELLARVDALEENTNARRTVNYERGDSSSGFAAHMKERVSELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F   LDVVRNEIADV+AR+NL MRAMANQAP GGAI  +R+K+S       K     R A
Sbjct: 121 FRVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAISVSRVKISEP-----KPFCEARDA 180

Query: 181 KNLPKAYF 186
           K+L    F
Sbjct: 181 KDLENYIF 183

[Close]
BLAST of PI0006501 vs. ExPASy TrEMBL
Match: A0A5D3DU93 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00280 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-52
Identity = 113/165 (68.48%), Postives = 136/165 (82.42%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS A P G A  DRL E+EEQMLYL E+PD++R+LE R+EE+SEKA  IDAV   ++GLP
Sbjct: 1   MSLADPSGNAQRDRLAELEEQMLYLGEVPDSIRYLESRVEEISEKAGTIDAVAGRVEGLP 60

Query: 61  IKELLTRVDTLEAKAG--RTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RVDTLEA     RTVNYERGD+S GFVAH+EERVGELDSSQK+++++INGMSED
Sbjct: 61  IQELLARVDTLEANTNVRRTVNYERGDSSSGFVAHMEERVGELDSSQKTLLKLINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSR 163
           F   LDVVRNEIADV+AR+NL MRAMANQAP GGAI  +R+K+ +
Sbjct: 121 FPVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAISVSRVKIPK 165

[Close]
BLAST of PI0006501 vs. ExPASy TrEMBL
Match: A0A5A7TU11 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00640 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.8e-52
Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS++ P GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV   ++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEA--KAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+EL+TRVD LE     GRTVNYERGD+S G VAHIEERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAI 155
           F A LDVVRNEIADV+AR++L MRAMANQAP GGAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

[Close]
BLAST of PI0006501 vs. NCBI nr
Match: KAA0065910.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK15107.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 7.4e-53
Identity = 116/188 (61.70%), Postives = 144/188 (76.60%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS+A P GK+  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK D IDAV   ++GLP
Sbjct: 1   MSSANPSGKSQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKIDTIDAVAGRIEGLP 60

Query: 61  IKELLTRVDTLEA--KAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RV+TLEA    GRT+NYERG++S GF AH+EERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELLARVETLEANTNVGRTINYERGESSSGFTAHMEERVSELDSSQKALLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F   LDVVRN+IADV+AR+NLMMRAMANQAP GG I  +++K+        K     R A
Sbjct: 121 FRVTLDVVRNKIADVNARLNLMMRAMANQAPAGGVISVSKVKIPEP-----KPFCGARDA 180

Query: 181 KNLPKAYF 186
           K L    F
Sbjct: 181 KTLENYIF 183

[Close]
BLAST of PI0006501 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-52
Identity = 119/188 (63.30%), Postives = 144/188 (76.60%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS++ PLGKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV   ++G P
Sbjct: 1   MSSSNPLGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLE--AKAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+EL+TRVD LE     GRTVNYERGD+S G VAHIEERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F A LDVVRNEIADV+AR++L MRAMANQAP GGAI  +R+K+        K     R A
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEP-----KPFCGARDA 180

Query: 181 KNLPKAYF 186
           K L    F
Sbjct: 181 KALENYIF 183

[Close]
BLAST of PI0006501 vs. NCBI nr
Match: KAA0067252.1 (uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK10861.1 uncharacterized protein E5676_scaffold231G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-52
Identity = 118/188 (62.77%), Postives = 143/188 (76.06%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           M ++ P GKA  DRLVEIEEQMLYL+E+PD++R+LE R++E+SEK D IDAV   ++GLP
Sbjct: 1   MLSSNPSGKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLP 60

Query: 61  IKELLTRVDTLE--AKAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RVD LE    A RTVNYERGD+S GF AH++ERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELLARVDALEENTNARRTVNYERGDSSSGFAAHMKERVSELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSRSFHDGRKESMSVRQA 180
           F   LDVVRNEIADV+AR+NL MRAMANQAP GGAI  +R+K+S       K     R A
Sbjct: 121 FRVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAISVSRVKISEP-----KPFCEARDA 180

Query: 181 KNLPKAYF 186
           K+L    F
Sbjct: 181 KDLENYIF 183

[Close]
BLAST of PI0006501 vs. NCBI nr
Match: TYK27261.1 (uncharacterized protein E5676_scaffold244G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 2.8e-52
Identity = 113/165 (68.48%), Postives = 136/165 (82.42%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS A P G A  DRL E+EEQMLYL E+PD++R+LE R+EE+SEKA  IDAV   ++GLP
Sbjct: 1   MSLADPSGNAQRDRLAELEEQMLYLGEVPDSIRYLESRVEEISEKAGTIDAVAGRVEGLP 60

Query: 61  IKELLTRVDTLEAKAG--RTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+ELL RVDTLEA     RTVNYERGD+S GFVAH+EERVGELDSSQK+++++INGMSED
Sbjct: 61  IQELLARVDTLEANTNVRRTVNYERGDSSSGFVAHMEERVGELDSSQKTLLKLINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAIQ-ARLKMSR 163
           F   LDVVRNEIADV+AR+NL MRAMANQAP GGAI  +R+K+ +
Sbjct: 121 FPVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAISVSRVKIPK 165

[Close]
BLAST of PI0006501 vs. NCBI nr
Match: KAA0046544.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 3.7e-52
Identity = 110/156 (70.51%), Postives = 132/156 (84.62%), Query Frame = 0 

Query: 1   MSTAKPLGKAHADRLVEIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTSLLDGLP 60
           MS++ P GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV   ++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEA--KAGRTVNYERGDNSMGFVAHIEERVGELDSSQKSIVEMINGMSED 120
           I+EL+TRVD LE     GRTVNYERGD+S G VAHIEERV ELDSSQK+++EMINGMSED
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 FCAALDVVRNEIADVSARVNLMMRAMANQAPIGGAI 155
           F A LDVVRNEIADV+AR++L MRAMANQAP GGAI
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

The following BLAST results are available for this feature:
BLAST of PI0006501 vs.
Match NameE-valueIdentityDescription
BLAST of PI0006501 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VFC83.6e-5361.70Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BYE66.1e-5363.30Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7VFV01.0e-5262.77Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DU931.4e-5268.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TU111.8e-5270.51Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11... [more]
BLAST of PI0006501 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065910.17.4e-5361.70senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK15107... [more]
TYK03099.11.3e-5263.30reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0067252.12.1e-5262.77uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK1... [more]
TYK27261.12.8e-5268.48uncharacterized protein E5676_scaffold244G00280 [Cucumis melo var. makuwa][more]
KAA0046544.13.7e-5270.51reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of PI0006501 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006501.1PI0006501.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004518 nuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity