PI0006460 (gene) Melon (PI 482460) v1

Overview


Name	PI0006460
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr11: 17946329 .. 17946727 (-)
RNA-Seq Expression	PI0006460
Synteny	PI0006460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCCTTTCATGTTTTTAGAAAAGATCAACAATAATGCATACAAAGTTGATCTTCGAAGTAAGTATCATGTGAGTGTTACATTTAATGTTGTTGACTTATCCTTTTTTTATACAGGTAATTATGATTCGAGGATGAATCCTTTCAAAGAGGTGGAGAATGATAAGATGTTGCACAACAAAACAGAACATGAGGTAGAAAACGAGGCTCAGCAAGCTCACACCAATTCAAGTGAAGAGGAAAATGAAGTACATGCTGAAACTTCATGGGAGAACTTTACAAGTCAAATTAATCAAGAGGCAATCATTATGCTTCAAGGTTCAATGACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAAATTTTTCAGCCTTTAA

mRNA sequence

ATGCACCCTTTCATGTTTTTAGAAAAGATCAACAATAATGCATACAAAGTTGATCTTCGAAGTAAGTATCATGTGAGTGTTACATTTAATGTTGTTGACTTATCCTTTTTTTATACAGGTAATTATGATTCGAGGATGAATCCTTTCAAAGAGGTGGAGAATGATAAGATGTTGCACAACAAAACAGAACATGAGGTAGAAAACGAGGCTCAGCAAGCTCACACCAATTCAAGTGAAGAGGAAAATGAAGTACATGCTGAAACTTCATGGGAGAACTTTACAAGTCAAATTAATCAAGAGGCAATCATTATGCTTCAAGGTTCAATGACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAAATTTTTCAGCCTTTAA

Coding sequence (CDS)

ATGCACCCTTTCATGTTTTTAGAAAAGATCAACAATAATGCATACAAAGTTGATCTTCGAAGTAAGTATCATGTGAGTGTTACATTTAATGTTGTTGACTTATCCTTTTTTTATACAGGTAATTATGATTCGAGGATGAATCCTTTCAAAGAGGTGGAGAATGATAAGATGTTGCACAACAAAACAGAACATGAGGTAGAAAACGAGGCTCAGCAAGCTCACACCAATTCAAGTGAAGAGGAAAATGAAGTACATGCTGAAACTTCATGGGAGAACTTTACAAGTCAAATTAATCAAGAGGCAATCATTATGCTTCAAGGTTCAATGACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAAATTTTTCAGCCTTTAA

Protein sequence

MHPFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLNACLQAKFFSL

Homology

[Close]

BLAST of PI0006460 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N  
Sbjct: 334 PFQVLEKVNDNAYKVDLR-------------------GNFDSRTNPFEEGENDKMLNN-- 393

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                    +A+TNS++EENE HAE SW N   Q NQE IIM QGSMTKARAKR +D LN
Sbjct: 394 ---------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELN 430

Query: 123 ACLQAKF 130
           ACLQA+F
Sbjct: 454 ACLQARF 430

[Close]

BLAST of PI0006460 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N  
Sbjct: 370 PFQVLEKVNDNAYKVDLR-------------------GNFDSRTNPFEEGENDKMLNN-- 429

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                    +A+TNS++EENE HAE SW N   Q NQE IIM QGSMTKARAKR +D LN
Sbjct: 430 ---------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELN 466

Query: 123 ACLQAKF 130
           ACLQA+F
Sbjct: 490 ACLQARF 466

[Close]

BLAST of PI0006460 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 72/125 (57.60%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 8   EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVE 67
           EKIN+NAYKVDLR                   GN+D R NPF+E END ML++       
Sbjct: 405 EKINDNAYKVDLR-------------------GNFDLRTNPFEEGENDTMLNS------- 464

Query: 68  NEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLNACL-- 127
               +AHTNS+EEENE HA  SWEN  SQ NQEAIIM QGSMTKARAKRLQD LNACL  
Sbjct: 465 ----EAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACLCN 499

Query: 128 QAKFF 131
             KFF
Sbjct: 525 APKFF 499

[Close]

BLAST of PI0006460 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 66/120 (55.00%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEKIN+NAYKVDLR                   GN+DSR N FKE E D ML    
Sbjct: 749 PFQVLEKINDNAYKVDLR-------------------GNFDSRTNLFKEGEKDNML---- 808

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                         +SEEENE HA  SWEN  SQ NQEAIIM QGSMTKARAKRLQDGLN
Sbjct: 809 --------------NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of PI0006460 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 49/82 (59.76%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 38  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQI 97
           +  N+DS  NPFKE ENDKML+N           +AHTNS+E+ENE H   SWENF  Q 
Sbjct: 42  FLSNFDSWTNPFKEGENDKMLNN-----------EAHTNSNEKENEAHVGNSWENFQRQT 101

Query: 98  NQEAIIMLQGSMTKARAKRLQD 120
           NQEA IM Q SMTKARAK LQD
Sbjct: 102 NQEA-IMAQCSMTKARAKILQD 111

[Close]

BLAST of PI0006460 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N  
Sbjct: 334 PFQVLEKVNDNAYKVDLR-------------------GNFDSRTNPFEEGENDKMLNN-- 393

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                    +A+TNS++EENE HAE SW N   Q NQE IIM QGSMTKARAKR +D LN
Sbjct: 394 ---------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELN 430

Query: 123 ACLQAKF 130
           ACLQA+F
Sbjct: 454 ACLQARF 430

[Close]

BLAST of PI0006460 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 71/127 (55.91%), Postives = 82/127 (64.57%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEK+N+NAYKVDLR                   GN+DSR NPF+E ENDKML+N  
Sbjct: 370 PFQVLEKVNDNAYKVDLR-------------------GNFDSRTNPFEEGENDKMLNN-- 429

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                    +A+TNS++EENE HAE SW N   Q NQE IIM QGSMTKARAKR +D LN
Sbjct: 430 ---------EAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELN 466

Query: 123 ACLQAKF 130
           ACLQA+F
Sbjct: 490 ACLQARF 466

[Close]

BLAST of PI0006460 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 72/125 (57.60%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 8   EKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKTEHEVE 67
           EKIN+NAYKVDLR                   GN+D R NPF+E END ML++       
Sbjct: 405 EKINDNAYKVDLR-------------------GNFDLRTNPFEEGENDTMLNS------- 464

Query: 68  NEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLNACL-- 127
               +AHTNS+EEENE HA  SWEN  SQ NQEAIIM QGSMTKARAKRLQD LNACL  
Sbjct: 465 ----EAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACLCN 499

Query: 128 QAKFF 131
             KFF
Sbjct: 525 APKFF 499

[Close]

BLAST of PI0006460 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 66/120 (55.00%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 3   PFMFLEKINNNAYKVDLRSKYHVSVTFNVVDLSFFYTGNYDSRMNPFKEVENDKMLHNKT 62
           PF  LEKIN+NAYKVDLR                   GN+DSR N FKE E D ML    
Sbjct: 749 PFQVLEKINDNAYKVDLR-------------------GNFDSRTNLFKEGEKDNML---- 808

Query: 63  EHEVENEAQQAHTNSSEEENEVHAETSWENFTSQINQEAIIMLQGSMTKARAKRLQDGLN 122
                         +SEEENE HA  SWEN  SQ NQEAIIM QGSMTKARAKRLQDGLN
Sbjct: 809 --------------NSEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLN 831

[Close]

BLAST of PI0006460 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 49/82 (59.76%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 38  YTGNYDSRMNPFKEVENDKMLHNKTEHEVENEAQQAHTNSSEEENEVHAETSWENFTSQI 97
           +  N+DS  NPFKE ENDKML+N           +AHTNS+E+ENE H   SWENF  Q 
Sbjct: 42  FLSNFDSWTNPFKEGENDKMLNN-----------EAHTNSNEKENEAHVGNSWENFQRQT 101

Query: 98  NQEAIIMLQGSMTKARAKRLQD 120
           NQEA IM Q SMTKARAK LQD
Sbjct: 102 NQEA-IMAQCSMTKARAKILQD 111

The following BLAST results are available for this feature:

BLAST of PI0006460 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CW05	1.0e-24	55.91	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7VCL9	1.0e-24	55.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53...	[more]
A0A5D3D7R5	1.6e-22	57.60	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3B744	2.9e-19	55.00	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CTJ1	5.8e-12	59.76	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4...	[more]

BLAST of PI0006460 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15114.1	2.1e-24	55.91	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0065903.1	2.1e-24	55.91	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19543.1	3.4e-22	57.60	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036753.1	6.0e-19	55.00	hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820...	[more]
TYK14528.1	1.2e-11	59.76	integrase [Cucumis melo var. makuwa]	[more]

BLAST of PI0006460 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006460.1	PI0006460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding