PI0006409 (gene) Melon (PI 482460) v1

Overview


Name	PI0006409
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr09: 8301541 .. 8302254 (-)
RNA-Seq Expression	PI0006409
Synteny	PI0006409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGATAGAGGGAAAGGAAAATGTGTGCAGCCTATGCAGAATTCCTTTGGTAGTCTTTCTGATTTGAGTGAGGGAGAAAATTGGGCGTTGGCATTAAGGGTTAGTACTCCTCCACCCTTATAGATGCCTATTATGAGTCCGGATGGTGGTCCTATAAGGCAATATGTTGATGATAGTTTCAATGATTAGTTGGTGTTCGTGGAATGTCTGGGGTCTAAATGATCTGGTGAAGTGTAGGATGGTGAGTGATTTTCTGAAGGTTTCCTCAGTTTGTTTTTGTTGTCTTCTAGAAAAGAGAGTTCGAGAGGGTAATTTCTATTCAGTTTCTGCCTAGTTTAGGGGTGCTTGGGGTTACACTTGTAGCTATAACAGCAGTGGTGTTGGGCAGATTTGGGTGATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAATGTGGTGGATGAGCAGTTTGTTTCTGGTGTGCTTTCAATTTGCACTCTGGTGTAACTGTGGAGGTGTTTTGTGTTTATGCCTCTAACAGTAATGTAAATCGTCGTGGGCTTTGGCGACGGTTAGCTGACATCACTTCTGGATGGTCGATTCCGGGGGTTGTCATGGGTGACTTTAATGCTATTCGTGTGTACTCTGATGGTGAGAATCTGGTTCCTGGTGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTGACTTGGTGGAGTCGTCTATTTAA

mRNA sequence

ATGCGAGATAGAGGGAAAGGAAAATGTGTGCAGCCTATGCAGAATTCCTTTGGTAGTCTTTCTGATTTGAGTGAGGGAGAAAATTGGGCGTTGGCATTAAGGTTTAGGGGTGCTTGGGGTTACACTTGTAGCTATAACAGCAGTGGTGTTGGGCAGATTTGGGTGATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAATGTGGTGGATGAGCATAATGTAAATCGTCGTGGGCTTTGGCGACGGTTAGCTGACATCACTTCTGGATGGTCGATTCCGGGGGTTGTCATGGGTGACTTTAATGCTATTCGTGTGTACTCTGATGGTGAGAATCTGGTTCCTGGTGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTGACTTGGTGGAGTCGTCTATTTAA

Coding sequence (CDS)

ATGCGAGATAGAGGGAAAGGAAAATGTGTGCAGCCTATGCAGAATTCCTTTGGTAGTCTTTCTGATTTGAGTGAGGGAGAAAATTGGGCGTTGGCATTAAGGTTTAGGGGTGCTTGGGGTTACACTTGTAGCTATAACAGCAGTGGTGTTGGGCAGATTTGGGTGATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAATGTGGTGGATGAGCATAATGTAAATCGTCGTGGGCTTTGGCGACGGTTAGCTGACATCACTTCTGGATGGTCGATTCCGGGGGTTGTCATGGGTGACTTTAATGCTATTCGTGTGTACTCTGATGGTGAGAATCTGGTTCCTGGTGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTGACTTGGTGGAGTCGTCTATTTAA

Protein sequence

MRDRGKGKCVQPMQNSFGSLSDLSEGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEHNVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDGENLVPGDMEEFDLAIREADLVESSI

Homology

[Close]

BLAST of PI0006409 vs. ExPASy TrEMBL
Match: A0A5A7U3C2 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00410 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 25  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH------------ 84
           EG   +++ RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE             
Sbjct: 238 EGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVTGTLTDLLSG 297

Query: 85  -------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDM 135
                        N+ RR LWRRL +ITS WS PGVVMGDFNAIRV+S+  G + + G+M
Sbjct: 298 VCVEVFCVYASNSNIERRLLWRRLVEITSAWSNPGVVMGDFNAIRVHSEAFGGSPIQGEM 357

[Close]

BLAST of PI0006409 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 78/206 (37.86%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 1   MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL--------------------------- 60
           +RDRGK   V  M NSFGSL ++ + + WAL++                           
Sbjct: 399 IRDRGKSMEV-IMPNSFGSLLEVGDADKWALSIIEGSSPPLQVDEGTDVLSGISSSIVGF 458

Query: 61  ------------------RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--- 120
                             RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE    
Sbjct: 459 CCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVT 518

Query: 121 ----------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG- 135
                                 N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+  
Sbjct: 519 GTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAWSSPGVVMEDFNAIRVHSEAF 578

[Close]

BLAST of PI0006409 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 78/206 (37.86%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 1   MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL--------------------------- 60
           +RDRGK   V  M NSFGSL ++ + + WAL++                           
Sbjct: 399 IRDRGKSMEV-IMPNSFGSLLEVGDADKWALSIIEGSSPPLQVDEGTDVLSGISSSIVGF 458

Query: 61  ------------------RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--- 120
                             RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE    
Sbjct: 459 CCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVT 518

Query: 121 ----------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG- 135
                                 N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+  
Sbjct: 519 GTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAWSSPGVVMEDFNAIRVHSEAF 578

[Close]

BLAST of PI0006409 vs. ExPASy TrEMBL
Match: A0A5A7V9D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00700 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 0


Query: 25  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH------------ 84
           EG   +++ +F  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE             
Sbjct: 71  EGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVTGTLTDLLFG 130

Query: 85  -------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDM 135
                        N+ RR LWRRL +ITS WS PGVVMGDFNAIRV+S+  G + + G+M
Sbjct: 131 VCVEVFCVYASNSNIERRLLWRRLVEITSAWSRPGVVMGDFNAIRVHSEAFGGSPIQGEM 190

[Close]

BLAST of PI0006409 vs. ExPASy TrEMBL
Match: A0A5D3DXQ8 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001370 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 34  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--------------------- 93
           RF  +W Y+CSY++SGVGQIWVMWK++ F+F+  VVDE                      
Sbjct: 223 RFGNSWDYSCSYSNSGVGQIWVMWKKNSFSFSTRVVDEQFVTGTLTDLLSGVRVEVFYVY 282

Query: 94  ----NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDMEEFDLAIRE 135
               N+ RR LW RL +IT GWS PG+VMGDFNAIRV+S+  G + + G+ME+FDLAIR+
Sbjct: 283 ASNSNIERRLLWCRLVEITYGWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRD 342

[Close]

BLAST of PI0006409 vs. NCBI nr
Match: KAA0049770.1 (hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK12107.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-29
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 25  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH------------ 84
           EG   +++ RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE             
Sbjct: 238 EGNFASVSRRFGNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVTGTLTDLLSG 297

Query: 85  -------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDM 135
                        N+ RR LWRRL +ITS WS PGVVMGDFNAIRV+S+  G + + G+M
Sbjct: 298 VCVEVFCVYASNSNIERRLLWRRLVEITSAWSNPGVVMGDFNAIRVHSEAFGGSPIQGEM 357

[Close]

BLAST of PI0006409 vs. NCBI nr
Match: KAA0062319.1 (hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-28
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 0


Query: 25  EGENWALALRFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH------------ 84
           EG   +++ +F  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE             
Sbjct: 71  EGNFDSVSRKFGNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVTGTLTDLLFG 130

Query: 85  -------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDM 135
                        N+ RR LWRRL +ITS WS PGVVMGDFNAIRV+S+  G + + G+M
Sbjct: 131 VCVEVFCVYASNSNIERRLLWRRLVEITSAWSRPGVVMGDFNAIRVHSEAFGGSPIQGEM 190

[Close]

BLAST of PI0006409 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-28
Identity = 78/206 (37.86%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 1   MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL--------------------------- 60
           +RDRGK   V  M NSFGSL ++ + + WAL++                           
Sbjct: 399 IRDRGKSMEV-IMPNSFGSLLEVGDADKWALSIIEGSSPPLQVDEGTDVLSGISSSIVGF 458

Query: 61  ------------------RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--- 120
                             RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE    
Sbjct: 459 CCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVT 518

Query: 121 ----------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG- 135
                                 N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+  
Sbjct: 519 GTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAWSSPGVVMEDFNAIRVHSEAF 578

[Close]

BLAST of PI0006409 vs. NCBI nr
Match: KAA0026071.1 (uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-28
Identity = 78/206 (37.86%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 1   MRDRGKGKCVQPMQNSFGSLSDLSEGENWALAL--------------------------- 60
           +RDRGK   V  M NSFGSL ++ + + WAL++                           
Sbjct: 399 IRDRGKSMEV-IMPNSFGSLLEVGDADKWALSIIEGSSPPLQVDEGTDVLSGISSSIVGF 458

Query: 61  ------------------RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--- 120
                             RF  +W Y+CSY++SGVG+IWVMWK++RF+F+ +V+DE    
Sbjct: 459 CCLLETRVREGNFDSVSRRFSNSWDYSCSYSNSGVGRIWVMWKKNRFSFSTHVMDEQFVT 518

Query: 121 ----------------------NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSDG- 135
                                 N+ RR LW RL +ITS WS PGVVM DFNAIRV+S+  
Sbjct: 519 GTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAWSSPGVVMEDFNAIRVHSEAF 578

[Close]

BLAST of PI0006409 vs. NCBI nr
Match: TYK28312.1 (uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-27
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 34  RFRGAWGYTCSYNSSGVGQIWVMWKRDRFAFTPNVVDEH--------------------- 93
           RF  +W Y+CSY++SGVGQIWVMWK++ F+F+  VVDE                      
Sbjct: 223 RFGNSWDYSCSYSNSGVGQIWVMWKKNSFSFSTRVVDEQFVTGTLTDLLSGVRVEVFYVY 282

Query: 94  ----NVNRRGLWRRLADITSGWSIPGVVMGDFNAIRVYSD--GENLVPGDMEEFDLAIRE 135
               N+ RR LW RL +IT GWS PG+VMGDFNAIRV+S+  G + + G+ME+FDLAIR+
Sbjct: 283 ASNSNIERRLLWCRLVEITYGWSSPGMVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRD 342

The following BLAST results are available for this feature:

BLAST of PI0006409 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3C2	3.1e-29	48.91	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5A7SPE5	3.5e-28	37.86	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXE4	3.5e-28	37.86	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V9D6	3.5e-28	48.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXQ8	2.2e-27	50.78	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of PI0006409 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049770.1	6.5e-29	48.91	hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa] >TYK1210...	[more]
KAA0062319.1	7.1e-28	48.18	hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa]	[more]
TYK28099.1	7.1e-28	37.86	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0026071.1	7.1e-28	37.86	uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]	[more]
TYK28312.1	4.6e-27	50.78	uncharacterized protein E5676_scaffold600G001370 [Cucumis melo var. makuwa]	[more]

BLAST of PI0006409 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 29..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006409.1	PI0006409.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane